mRNA_P-littoralis_Contig801.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig801.25.1
Unique NamemRNA_P-littoralis_Contig801.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig801.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig801contigP-littoralis_Contig801:121945..123786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog37682.EMT10995
PFAMsRNase_T,zf-GRF
Model size363
Max annot lvl35493|Streptophyta
KEGG koko:K18416,ko:K18417
Hectar predicted targeting categoryother localisation
GOsGO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Exons2
Evalue0.000651
EggNOG OGsCOG5018@1|root,KOG0542@2759|Eukaryota,37K8N@33090|Viridiplantae,3GG3Z@35493|Streptophyta,3KQB5@4447|Liliopsida,3I91B@38820|Poales
DescriptionExonuclease
Cds size360
COG categoryL
BRITEko00000,ko01000,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791650.7267957-CDS-P-littoralis_Contig801:121944..1220881680791650.7267957-CDS-P-littoralis_Contig801:121944..122088Pylaiella littoralis U1_48CDSP-littoralis_Contig801 121945..122088 +
1680791650.778147-CDS-P-littoralis_Contig801:123568..1237841680791650.778147-CDS-P-littoralis_Contig801:123568..123784Pylaiella littoralis U1_48CDSP-littoralis_Contig801 123569..123784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig801.25.1prot_P-littoralis_Contig801.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig801 121945..123784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig801.25.1

>prot_P-littoralis_Contig801.25.1 ID=prot_P-littoralis_Contig801.25.1|Name=mRNA_P-littoralis_Contig801.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
GNGGCGELGRRCESDVEDVEGRRANDVAARRTVCYCGAPARSRTIRIEGP
LKGRTFSSCANRTLVDRCALRELEGERGGAGAEGEDDSGWKEVFDYLADA
QQKIRKEGGGLGGEGSGGCG
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mRNA from alignment at P-littoralis_Contig801:121945..123786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig801.25.1 ID=mRNA_P-littoralis_Contig801.25.1|Name=mRNA_P-littoralis_Contig801.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1842bp|location=Sequence derived from alignment at P-littoralis_Contig801:121945..123786+ (Pylaiella littoralis U1_48)
GGTAATGGCGGCTGCGGGGAGCTCGGACGGAGGTGTGAGTCTGATGTGGA
AGATGTGGAAGGGAGACGAGCTAACGACGTAGCCGCGCGGCGGACGGTGT
GCTACTGTGGGGCCCCTGCACGATCGCGGACTATCAGGATAGAGGTGAGC
TGCCGCCAAAAGTATTATTGTGTTTTGATTACGTTACTTGATTACTTTGA
CTCCTGTGTGCGTGTTTTCGTTGCGTTCCCAAACATCACCCGCCGCCTTT
GCGACGGAGATAACCCGCGGTCTGTTGGATTGCAAACCACCCGTTACCTC
CTCCAACACACTGAATCAAACGTCACGAGTGATAGGGTTGGCGGCGCGAA
GTTCATCCCGATAATTGGGATAAATGATTCGGTCGTTATACCTTGGACCC
CCCTGGGGCTTGAAAAACAAATCATGGAGCAAAAAAATAACTGATTCCGG
TGCGCGCCGATGATTGGCGAAAATGATGGACAGTCTaAAAAACAAAATAC
TGACGTCTCGCTGACTCTCTACGGTGAAAAAAgGATTGACTTGGGCACAC
ACTGAAGTCTGTCCCCAATTTGGCGAAAACAAAATGGGTACAAATTCCAG
TCTAAACCTATACCAAACTCACTTGGGGGGGTCCACTACACAAAAGATTT
TCGTACAGTTTTTCAGGAAGTTTCTTGGAAGGGATACTGCTGTATGCAAG
GTAGCACGCAAGCAGCACCACCGCTACTTAGCATGGCAGATCAGGGTACC
CCGCTCGACAACCACACAGTAGGATTCCACTCCACAAGGTTTACCCGCGC
ACGACATTCACTCAGGGTCTACAGCAGCAGCAGCACTGTACAGCAGTCCT
ATTATTTACTCTGAAGTCAAACATATGTTGCATGATCAAGGCAGGGTGTC
GGTATGTGATGGTACCCATGTGATGATACTCGTACGAGATCGTCGGGTAT
GTTTGTGAGCCTTTAAATGTGCGTGGCGCAATGTGTTTGTTTCTAGTGTT
GGCCCGCGTGCGCGTGGTGTGTGTCTCACCAACCAATCGCACGACACAAG
CTGCTGCAGCATGCACAGCAGCACAGTAGTAGTAAAGTAGTCGCAGAAAT
CATGTAAGTGCAGCAGTACATCATCATCATCAGCGTTTCATAGCAGCGGT
AGTGTAACATAGAAGGTATCATGTACTTCGAAGTATTATATGTGTGCATG
TGTGCAACGCAGGGAGAGGTGCCGGCATGGTGTGTGATACAAGACGATCG
CCGTTCGTTGTGTCTACTGTGCTGTAGAGGGAAGATACTAACACACAACA
AACCTAACGGTCGGGCGCGCTTGCTCTCCCGTAATAATAAATAAAAACTA
TATGTGGCACCGAGGCAGCCAACGATTGGTCGATCCATCCGTCGAGCGAG
CGCACGGAACCACACCCAAAATACCTGTAGATAGCCGCCTTCAAAATCCA
AGTCACAAAAAATAACAGGTGTCCCCAAATTGTCCCCAATTGGGATTGGG
CGGTCAGAGGGTTGAATCTACCCCGTTTGAGATTCGCCAGCACAGTTTCC
GGAACGTCACTTAACTCAATCCTCACGGCGCCCCCCACATCCGCTTAATG
CCTGCTGCAATCCGCTTCACCCAGGGACCTCTCAAAGGGCGCACGTTTTC
TTCGTGCGCGAACAGAACCTTGGTCGACCGGTGCGCTTTACGAGAGTTAG
AAGGGGAAAGGGGCGGCGCAGGAGCCGAGGGGGAGGACGATAGCGGCTGG
AAAGAGGTTTTCGATTATTTAGCTGATGCTCAACAGAAAATTCGGAAAGA
AGGTGGCGGACTTGGAGGCGAAGGGTCTGGGGGGTGCGGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig801:121945..123786+

>mRNA_P-littoralis_Contig801.25.1 ID=mRNA_P-littoralis_Contig801.25.1|Name=mRNA_P-littoralis_Contig801.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig801:121945..123786+ (Pylaiella littoralis U1_48)
GGTAATGGCGGCTGCGGGGAGCTCGGACGGAGGTGTGAGTCTGATGTGGA
AGATGTGGAAGGGAGACGAGCTAACGACGTAGCCGCGCGGCGGACGGTGT
GCTACTGTGGGGCCCCTGCACGATCGCGGACTATCAGGATAGAGGGACCT
CTCAAAGGGCGCACGTTTTCTTCGTGCGCGAACAGAACCTTGGTCGACCG
GTGCGCTTTACGAGAGTTAGAAGGGGAAAGGGGCGGCGCAGGAGCCGAGG
GGGAGGACGATAGCGGCTGGAAAGAGGTTTTCGATTATTTAGCTGATGCT
CAACAGAAAATTCGGAAAGAAGGTGGCGGACTTGGAGGCGAAGGGTCTGG
GGGGTGCGGC
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