mRNA_P-littoralis_Contig800.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig800.20.1
Unique NamemRNA_P-littoralis_Contig800.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig800.20.1 vs. uniprot
Match: D7G505_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G505_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 1.340e-85
Identity = 162/296 (54.73%), Postives = 209/296 (70.61%), Query Frame = 2 
Query:    2 ASGRSGSGFEGGRAADLGFGATKYSLFGSDECSSISGHAYGEDALPTVARNAILDEGDSSVEPSQAE--GGVYRANLNVYNPMVYHAVNSSRGNATSLAVRHSKVSATVELLRAVAISGAYLSPKRLQELEDVCAQVRSTALDVLSGIDGAEGGLRTEVTYLCNTDRQTAVDLSGVFELMCGDLVGEVFGVENGGWNDAEASLSLPASSVYCLMHALFARSLESMRYGFGGQR-VADPDSGDVLREQLPLGYLPSLAESILRTDAKAIRLPAGVGSALRAGQAASGFLG----ASW 868
            ASGRSG G+EGGR  DLGF  TKYSLFGSD+C+SISG AYG+ +LP VAR++ILD+  +++  + A+  G + R NLNVY+P V HA NSS+G+A ++A+R S+VS  VELLR V +SGA+LS  R+ E     A+ R  AL ++SG+ GA G LRTEVTYL  +D        G FE MC DL+GEVFGV+ GGWND +A+ +LP   V CLMHAL  RSLES+++GF     + DP   DV+  QLP+G+LPS+ ES+LR D  ++R+  GVGSALRAGQA+ GFL     ASW
Sbjct:  323 ASGRSGVGYEGGRGTDLGFDVTKYSLFGSDQCASISGQAYGKPSLPAVARHSILDDASNALTSADAQLAGVISRTNLNVYSPTVLHATNSSKGHAMAVALRGSRVSNAVELLRGVGVSGAFLSDARVGEAHAAVAKGREAALAIISGMKGANGSLRTEVTYLLESDGADDGAAQG-FERMCADLLGEVFGVQVGGWNDIDATFALPTEVVVCLMHALCVRSLESIKFGFNTLADLGDPRCDDVIPGQLPIGHLPSVGESVLRMDGLSLRIAGGVGSALRAGQASCGFLALRDDASW 617
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig800.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G505_ECTSI1.340e-8554.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig800contigP-littoralis_Contig800:123621..125931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1539
Hectar predicted targeting categoryother localisation
Exons3
Cds size789
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791650.6309624-UTR-P-littoralis_Contig800:123620..1237301680791650.6309624-UTR-P-littoralis_Contig800:123620..123730Pylaiella littoralis U1_48UTRP-littoralis_Contig800 123621..123730 +
1680791650.6429727-UTR-P-littoralis_Contig800:123886..1240051680791650.6429727-UTR-P-littoralis_Contig800:123886..124005Pylaiella littoralis U1_48UTRP-littoralis_Contig800 123887..124005 +
1680791650.6537228-UTR-P-littoralis_Contig800:124621..1246331680791650.6537228-UTR-P-littoralis_Contig800:124621..124633Pylaiella littoralis U1_48UTRP-littoralis_Contig800 124622..124633 +
1680791650.6797013-UTR-P-littoralis_Contig800:125422..1259311680791650.6797013-UTR-P-littoralis_Contig800:125422..125931Pylaiella littoralis U1_48UTRP-littoralis_Contig800 125423..125931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791650.666712-CDS-P-littoralis_Contig800:124633..1254221680791650.666712-CDS-P-littoralis_Contig800:124633..125422Pylaiella littoralis U1_48CDSP-littoralis_Contig800 124634..125422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig800.20.1prot_P-littoralis_Contig800.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig800 124634..125422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig800.20.1

>prot_P-littoralis_Contig800.20.1 ID=prot_P-littoralis_Contig800.20.1|Name=mRNA_P-littoralis_Contig800.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=263bp
MVYHAVNSSRGNATSLAVRHSKVSATVELLRAVAISGAYLSPKRLQELED
VCAQVRSTALDVLSGIDGAEGGLRTEVTYLCNTDRQTAVDLSGVFELMCG
DLVGEVFGVENGGWNDAEASLSLPASSVYCLMHALFARSLESMRYGFGGQ
RVADPDSGDVLREQLPLGYLPSLAESILRTDAKAIRLPAGVGSALRAGQA
ASGFLGASWNRFLTRYTLDNVDERERGSIHCLAAYSTTKTAATCMLLPQS
PMVRVRSCYFVS*
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mRNA from alignment at P-littoralis_Contig800:123621..125931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig800.20.1 ID=mRNA_P-littoralis_Contig800.20.1|Name=mRNA_P-littoralis_Contig800.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2311bp|location=Sequence derived from alignment at P-littoralis_Contig800:123621..125931+ (Pylaiella littoralis U1_48)
GGCTTCTGGTCGTAGCGGGTCCGGGTTCGAGGGTGGGCGTGCTGCTGATT
TGGGCTTCGGGGCGACAAAGTACAGCCTGTTTGGGTCGGACGAGTGTTCG
TCAATCTCAGGTTTGTTATTGATATTCAACATAGGGTCGGGTTATGTTTA
GCGACGTAAAACTGGTGTTGGCTCCTCATTCGGGCCGTAAGGAAGGTAGC
ATGATATCATATTACGGACTTCGTACTACCCGAGACCCTAACGCGTCATG
ATCTTCTATACTGCAGGTCATGCGTATGGAGAGGATGCGTTGCCCACCGT
GGCCCGTAACGCAATCCTGGATGAAGGGGACTCCTCTGTCGAGCCTAGTC
AGGCCGAAGGAGGTGTTTACCGGGCAAATTTGAACGTGAGCGCTGGAATA
CGGCGACAAGTTGACGCATTTTTGGTGCAAACAAGAGTAGGATTAAGTCT
GGCCTGTCGGCTGCAGTTTGCTCAGGGCTTAGGGTGAGTGCGATGGGCAA
CTTAGCCTATTTTATTGGACGGCAATATTGGTTTCTAGCGCAAATTACGT
AGCGTGCACGTACCATGGTGGTGCGTTTCATTGTATCGCGTGGGACGTTG
GGGTGGGTTAGGGCGGCGGGTTTAACCTTCGTCGTTAAGGTCATTCCTGT
TGCAATGACTATTTGGGATCCCTCTCTATTGTGCAACCGTTGATGGTTGT
GTTTCTGCGTATGGAAGTCCCGTCCTACTCCCTTATCTGAGAGGCCAGTA
CCTTTAGGGGCCGTTGCCAAAAGGCAGGTCCCGATTACCTACGCCCTCCC
GTTCCGTGTCACACCTGCCAGAGTAGCTACAGAGCGATAGCTTGGACGTG
GGATAGAACATCGATCGCATCTGTGAGGTGCTCTTGTTTCGCAACCCAAC
CCTAGCGACCGAGTACCGAGCACCTTCGTGCTTGTGCCTATGCGGGCTGC
TAACTTGAATTGATAATTCTTCCTCCACATTAACTGTTGTACGGAAATCA
GGTTTACAACCCAATGGTGTATCATGCGGTCAATTCATCGAGAGGGAACG
CGACGTCGTTAGCGGTGCGTCATTCCAAGGTCTCGGCCACCGTTGAGCTC
CTGCGGGCTGTTGCCATCAGTGGCGCCTACCTCTCACCGAAGCGCCTTCA
GGAGCTCGAAGACGTCTGCGCACAAGTGCGATCGACTGCGCTGGATGTGT
TATCCGGGATCGACGGCGCTGAAGGAGGCCTGCGCACCGAGGTTACCTAC
CTATGCAACACCGATAGACAGACGGCCGTTGACCTTTCTGGAGTGTTTGA
GTTGATGTGTGGGGACTTGGTTGGCGAGGTGTTCGGAGTAGAAAATGGCG
GTTGGAACGATGCGGAAGCTTCCTTGTCTCTGCCCGCTTCGAGCGTGTAC
TGCTTGATGCATGCATTGTTTGCGAGATCGTTGGAGTCAATGAGGTATGG
ATTCGGAGGCCAGCGAGTTGCAGATCCTGACTCAGGTGATGTTTTACGCG
AGCAGCTTCCCTTGGGGTACCTCCCGTCGTTGGCAGAAAGTATACTTCGC
ACGGACGCGAAGGCGATCAGGCTTCCGGCAGGTGTCGGCAGCGCTTTACG
TGCTGGGCAGGCGGCCAGCGGATTTTTAGGTGCGTCCTGGAATCGATTCC
TCACGCGGTATACCCTTGATAATGTCGACGAGCGTGAGCGAGGGTCGATA
CACTGTCTGGCCGCTTACAGCACCACCAAAACCGCAGCAACCTGTATGCT
CTTGCCTCAATCACCAATGGTGCGTGTACGCTCTTGTTATTTCGTTTCCT
GACACGGCCCTGTCAGCTCTAGGTACGGATGCGAAATGGATGTTCGCACC
TGGAGGTGACAAAAGAGTGCCGTACGGAACCTTTGTTGCACGCACCGGTC
GCAGGCGGGTCAGTGGGTTCGCCCCTGGCTCCCACGAATTCCTCTCTAAG
GAATCTCTAAGCTTGCCCGCCAAGACACGTAGAGCAGACTTGCTTCGGGA
CGGTGGTGAAAGGCTTCTGTCTCTGATGCAGTCGGTTATCGGGCACATAA
TGGCCGATGCTGCTGGTGAGAAAAACAAATAGCAATGTGCCCGAAACGCG
GGTTTGACCTAAGGTTCGACTCCTCAATGAGTTATTTAGAATCTTAGATA
TACGGCCCTTTGAAGTGGTTGGGAAGCGCGTCAGGGGCCTTACCGCCAGG
CTTTACACTTGCACCTGGTCCCACGGCGTTTAGGATCTCGAAAAACCTCG
GGTCGTCCTAACAACTCTGTAGTACTAAAGTCTGTGTGCACGATTCAAGC
GCTGGGCTTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig800:123621..125931+

>mRNA_P-littoralis_Contig800.20.1 ID=mRNA_P-littoralis_Contig800.20.1|Name=mRNA_P-littoralis_Contig800.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=789bp|location=Sequence derived from alignment at P-littoralis_Contig800:123621..125931+ (Pylaiella littoralis U1_48)
ATGGTGTATCATGCGGTCAATTCATCGAGAGGGAACGCGACGTCGTTAGC
GGTGCGTCATTCCAAGGTCTCGGCCACCGTTGAGCTCCTGCGGGCTGTTG
CCATCAGTGGCGCCTACCTCTCACCGAAGCGCCTTCAGGAGCTCGAAGAC
GTCTGCGCACAAGTGCGATCGACTGCGCTGGATGTGTTATCCGGGATCGA
CGGCGCTGAAGGAGGCCTGCGCACCGAGGTTACCTACCTATGCAACACCG
ATAGACAGACGGCCGTTGACCTTTCTGGAGTGTTTGAGTTGATGTGTGGG
GACTTGGTTGGCGAGGTGTTCGGAGTAGAAAATGGCGGTTGGAACGATGC
GGAAGCTTCCTTGTCTCTGCCCGCTTCGAGCGTGTACTGCTTGATGCATG
CATTGTTTGCGAGATCGTTGGAGTCAATGAGGTATGGATTCGGAGGCCAG
CGAGTTGCAGATCCTGACTCAGGTGATGTTTTACGCGAGCAGCTTCCCTT
GGGGTACCTCCCGTCGTTGGCAGAAAGTATACTTCGCACGGACGCGAAGG
CGATCAGGCTTCCGGCAGGTGTCGGCAGCGCTTTACGTGCTGGGCAGGCG
GCCAGCGGATTTTTAGGTGCGTCCTGGAATCGATTCCTCACGCGGTATAC
CCTTGATAATGTCGACGAGCGTGAGCGAGGGTCGATACACTGTCTGGCCG
CTTACAGCACCACCAAAACCGCAGCAACCTGTATGCTCTTGCCTCAATCA
CCAATGGTGCGTGTACGCTCTTGTTATTTCGTTTCCTGA
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