mRNA_P-littoralis_Contig800.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig800.16.1
Unique NamemRNA_P-littoralis_Contig800.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig800.16.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 1.890e-91
Identity = 155/221 (70.14%), Postives = 177/221 (80.09%), Query Frame = 1
Query:    1 FIKQSKAKAAEQAKTFGGTCPRAGKEPPHAITSIPLIAKLLTPGLCDDPLDSIYILNGVYFKNSALGELELYFNWEYVFDPQSIGVVLGETKVEVDGEEFAVERFNHGEYTLADSSIMHQWALLENRTGGDVTLEDEQRRFIIHLVTTYVNMMVNVVPAVITHTNDESKTKTMLWNPGSARANETNPERVKELDQIVNRVDTLRDLTLRIFTGASVKDTLP 663
            F++ S+AKAAE+AK F  TCPR   EPP +ITSIPLIAKLLT GLCDDPLD I IL+GV+FK +AL  LE YFNWEYVFDP+SIGV LG TKV +D EEF VE F+ GEY+L+D S+M QW +LENRT G VTLEDEQRRFIIHLVTTYVNMM +VVP VI  +   S  K M+WNP  A   ETN ER +ELDQI+NRV+TLRDLTLRIFTGA+VKDTLP
Sbjct:  703 FVEASRAKAAEKAKHFENTCPRTPNEPPSSITSIPLIAKLLTRGLCDDPLDGIEILDGVFFKRAALDALERYFNWEYVFDPESIGVFLGTTKVGIDDEEFVVESFDCGEYSLSDGSVMQQWGVLENRTDGGVTLEDEQRRFIIHLVTTYVNMMAHVVPVVIEESTP-SMVKDMMWNPVEAGKRETNKERREELDQIINRVNTLRDLTLRIFTGAAVKDTLP 922          
BLAST of mRNA_P-littoralis_Contig800.16.1 vs. uniprot
Match: A0A6H5J7T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7T3_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 7.160e-41
Identity = 98/221 (44.34%), Postives = 114/221 (51.58%), Query Frame = 1
Query:    1 FIKQSKAKAAEQAKTFGGTCPRAGKEPPHAITSIPLIAKLLTPGLCDDPLDSIYILNGVYFKNSALGELELYFNWEYVFDPQSIGVVLGETKVEVDGEEFAVERFNHGEYTLADSSIMHQWALLENRTGGDVTLEDEQRRFIIHLVTTYVNMMVNVVPAVITHTNDESKTKTMLWNPGSARANETNPERVKELDQIVNRVDTLRDLTLRIFTGASVKDTLP 663
            F+++SKAKA E+A+   GTC RAGKEPPHAITSIPLIAKLLTPGLCDDP                                                                   IMHQW LLE RT G VTLE EQRRF+IHLVTTYVNM+ +VVPA + +   + K                     +ELDQI+NRV+TLRDL LR+FT A+VKDTLP
Sbjct:  146 FMERSKAKADEKAEEIEGTCSRAGKEPPHAITSIPLIAKLLTPGLCDDP------------------------------------------------------------------GIMHQWGLLEKRTDGVVTLEAEQRRFVIHLVTTYVNMITHVVPARLANMRGKRK---------------------EELDQIINRVNTLRDLMLRVFTDAAVKDTLP 279          
BLAST of mRNA_P-littoralis_Contig800.16.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.520e-33
Identity = 86/202 (42.57%), Postives = 116/202 (57.43%), Query Frame = 1
Query:   85 HAITSIPLIAKLLTPGLCDDPLDSIYILNGVYFKNSALGELELYFNWEYVFDPQSIGVVLGETKVEVDGEEFAVERFNHGEYTLAD-SSIMHQWALLENRTGGDVTLEDEQRRFIIHLVTTYVNMMVNVVPAVITHTNDESKTKTMLWNPGSA------RANETNPER---VKELDQIVNRVDTLRDLTLRIFTGASVKDTL 660
             A +S P + +    G   +    I I +GVY+K + L  L+ Y++  Y FDP++IGVVL ET V++D    AV+  +HG+YTL    S + QW LLENR    VTL+ + RRFI+HLVT Y  MM +VVPA+            MLWNP  A        ++T+PER   + EL  I  RVDTLRDL+L +FT   V+ TL
Sbjct:   82 EAASSTPHVTERQEEGSDGNGEGDIEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPAL------SGVVTGMLWNPNDAIDRASRSGDDTDPERKMKISELMSIKVRVDTLRDLSLAVFTKIPVEATL 277          
BLAST of mRNA_P-littoralis_Contig800.16.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.870e-27
Identity = 80/189 (42.33%), Postives = 105/189 (55.56%), Query Frame = 1
Query:  130 GLCDDPLDSIYILNG-VYFKNSALGELELYFNWEYVFDPQSIGVVLGETKVEVDGEEFAVERFNHGEYTLADSSIMHQWALLENRTGGDVTLEDEQRRFIIHLVTTYVNMMVNVVPAVITHTNDESKTKTMLWNPGSA----RAN------ETNPERVKELDQIVNRVDTLRDLTLRIFTGASVKDTLP 663
            GLCD    +   LN  V FK S L  L+ YF+  Y+F+P SI VV+G T+V++DG  F VE F+HG+Y LA    + QW LL+NR G   TL+DE RRFII     YV MM   VP    H N    T+ MLWN   A    RA+      E+N   ++EL  +    + +R L+L IFT   + +TLP
Sbjct:  190 GLCDASAPNSLKLNDKVGFKRSELPGLKYYFDKNYMFNPASIEVVVGSTRVKIDGRIFVVESFDHGKYNLAGHKPITQWELLQNRRGEGATLDDELRRFIIQQADDYVVMMARAVPYF--H-NCGIATEGMLWNIKEAVERARAHPDNIDVESNKMTLEELASLQEGHEKMRSLSLEIFTTLPLSETLP 375          
BLAST of mRNA_P-littoralis_Contig800.16.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.600e-19
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  151 DSIYILNGVYFKNSALGELELYFNWEYVFDPQSIGVVLGETKVEVDGEEFAVERFNHGEYTL-ADSSIMHQWALLENRTGGDVTLEDEQRRFIIHLVTT 444
            D I I  GVY K + +  L  Y++  Y+FDP+SIGVV GET VE+DG    V+  + G+Y L    S + QW LL NR G  VTL+ + RRFI HL  T
Sbjct:  104 DDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHLTDT 202          
BLAST of mRNA_P-littoralis_Contig800.16.1 vs. uniprot
Match: A0A6H5JK98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK98_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.600e-10
Identity = 56/170 (32.94%), Postives = 83/170 (48.82%), Query Frame = 1
Query:    7 KQSKAKAAEQAKTFGGTCPRAGKEP-----PHAITSIPLIAKLLTPGLCDDPLDSIYILNGVY-FKNSALGELELYFNWEYVFDPQSIGVVLGETKVEVDGEEFAVERFNHGEYTLAD-----SSIMHQWALLENRTG---GDVTLEDEQRRFIIHLVTTYVNMMVNVVP 474
            K S+ +  ++  T  GT  +AG E       HAI++I L           + LD +Y   G   FK S        +N     +P  IG+++GET+V++DG  + V     G Y+LA      S  + QW +LENR     G  TLE++QR+F I L+  Y NM + +VP
Sbjct:  125 KWSRCEIKDRKATSDGTWAKAGGEAGKSAGTHAISAIKL-----------EDLDEVYFNVGTKGFKES--------YNMVSKVNPGDIGIIMGETRVKMDGVHYTVVSVEDGLYSLAKDGGAASKELGQWEVLENRIHDGQGHATLEEDQRKFAISLILQYGNMWLTMVP 275          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig800.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LPM1_ECTSI1.890e-9170.14PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J7T3_9PHAE7.160e-4144.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ27_ECTSI3.520e-3342.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6S7_9PHAE1.870e-2742.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQV3_ECTSI5.600e-1947.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK98_9PHAE2.600e-1032.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig800contigP-littoralis_Contig800:90523..91185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHJ0
Model size663
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.38e-15
EggNOG OGs2EVBK@1|root,2SXC2@2759|Eukaryota
Cds size663
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791650.4603524-CDS-P-littoralis_Contig800:90522..911851680791650.4603524-CDS-P-littoralis_Contig800:90522..91185Pylaiella littoralis U1_48CDSP-littoralis_Contig800 90523..91185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig800.16.1prot_P-littoralis_Contig800.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig800 90523..91185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig800.16.1

>prot_P-littoralis_Contig800.16.1 ID=prot_P-littoralis_Contig800.16.1|Name=mRNA_P-littoralis_Contig800.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=221bp
FIKQSKAKAAEQAKTFGGTCPRAGKEPPHAITSIPLIAKLLTPGLCDDPL
DSIYILNGVYFKNSALGELELYFNWEYVFDPQSIGVVLGETKVEVDGEEF
AVERFNHGEYTLADSSIMHQWALLENRTGGDVTLEDEQRRFIIHLVTTYV
NMMVNVVPAVITHTNDESKTKTMLWNPGSARANETNPERVKELDQIVNRV
DTLRDLTLRIFTGASVKDTLP
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mRNA from alignment at P-littoralis_Contig800:90523..91185+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig800.16.1 ID=mRNA_P-littoralis_Contig800.16.1|Name=mRNA_P-littoralis_Contig800.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig800:90523..91185+ (Pylaiella littoralis U1_48)
TTCATTAAGCAAAGCAAGGCAAAGGCCGCTGAACAAGCAAAAACGTTCGG GGGTACGTGTCCCCGTGCGGGCAAGGAGCCGCCCCATGCAATCACGTCGA TCCCTCTCATCGCCAAACTACTCACCCCAGGGTTGTGCGACGACCCTCTA GACAGTATCTACATCTTGAACGGAGTGTACTTCAAGAACTCCGCCCTTGG TGAGCTCGAGCTTTACTTCAACTGGGAGTACGTGTTCGATCCACAGAGCA TCGGGGTGGTTTTGGGAGAGACCAAGGTTGAAGTCGACGGCGAAGAATTC GCGGTGGAGAGGTTCAATCATGGCGAGTACACCCTGGCGGACAGTAGCAT CATGCATCAGTGGGCTCTCCTGGAAAACCGGACCGGCGGCGACGTGACAC TGGAAGATGAACAACGGCGGTTCATCATCCACCTGGTGACGACGTACGTG AACATGATGGTTAATGTCGTGCCGGCTGTGATAACCCATACAAACGATGA AAGTAAGACCAAGACTATGCTGTGGAACCCCGGTTCGGCTCGTGCAAATG AGACTAATCCGGAACGGGTGAAGGAGCTGGACCAAATCGTCAACCGCGTC GACACTCTGCGGGACCTGACACTGAGAATCTTCACCGGAGCCTCCGTGAA GGACACCCTGCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig800:90523..91185+

>mRNA_P-littoralis_Contig800.16.1 ID=mRNA_P-littoralis_Contig800.16.1|Name=mRNA_P-littoralis_Contig800.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig800:90523..91185+ (Pylaiella littoralis U1_48)
TTCATTAAGCAAAGCAAGGCAAAGGCCGCTGAACAAGCAAAAACGTTCGG
GGGTACGTGTCCCCGTGCGGGCAAGGAGCCGCCCCATGCAATCACGTCGA
TCCCTCTCATCGCCAAACTACTCACCCCAGGGTTGTGCGACGACCCTCTA
GACAGTATCTACATCTTGAACGGAGTGTACTTCAAGAACTCCGCCCTTGG
TGAGCTCGAGCTTTACTTCAACTGGGAGTACGTGTTCGATCCACAGAGCA
TCGGGGTGGTTTTGGGAGAGACCAAGGTTGAAGTCGACGGCGAAGAATTC
GCGGTGGAGAGGTTCAATCATGGCGAGTACACCCTGGCGGACAGTAGCAT
CATGCATCAGTGGGCTCTCCTGGAAAACCGGACCGGCGGCGACGTGACAC
TGGAAGATGAACAACGGCGGTTCATCATCCACCTGGTGACGACGTACGTG
AACATGATGGTTAATGTCGTGCCGGCTGTGATAACCCATACAAACGATGA
AAGTAAGACCAAGACTATGCTGTGGAACCCCGGTTCGGCTCGTGCAAATG
AGACTAATCCGGAACGGGTGAAGGAGCTGGACCAAATCGTCAACCGCGTC
GACACTCTGCGGGACCTGACACTGAGAATCTTCACCGGAGCCTCCGTGAA
GGACACCCTGCCC
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