mRNA_P-littoralis_Contig800.13.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig800.13.1 vs. uniprot
Match: A0A6H5JQ58_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ58_9PHAE) HSP 1 Score: 147 bits (371), Expect = 8.190e-40 Identity = 88/191 (46.07%), Postives = 116/191 (60.73%), Query Frame = 3
Query: 189 PYFDIDQMQSTMRHMFIDEQSRNGSKGRLAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKEKPGGGSRKWCSVHRTGTHNDDECYEQGGKR------LGQALSACTQCAQCSGT--KKDNSTQAEEQNSSEDREEFDAGFML-TATR-DARTFVPDAEGVTLLIDSGATETFLDDQLI 731
P FD QMQSTMR++F+DEQSR G KGR+AGRG AM T+ +IICH C E GH + CP++K+ K K KP G + KW S H T +H+D+ECY+QG KR +A +AC C CS K D++ + N + D FD+GFM T R R F + GV LL+D+GA+ET D++LI
Sbjct: 56 PSFDEQQMQSTMRNIFLDEQSRKGWKGRIAGRGFAMAT-TASNIICHSCYEPGHIRRNCPKIKNRAK----KKTKPAGAT-KWYSKHNTLSHSDEECYQQGRKRPEDTKDSSKAFTACFNCTHCSSASNKNDSNNEVAVVNFTPDENAFDSGFMFATCFRISGRNFAASSTGVGLLVDTGASETMFDNRLI 240
BLAST of mRNA_P-littoralis_Contig800.13.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE) HSP 1 Score: 152 bits (385), Expect = 9.710e-39 Identity = 88/203 (43.35%), Postives = 115/203 (56.65%), Query Frame = 3
Query: 189 PYFDIDQMQSTMRHMFIDEQSRNGSKGRLAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKEKPGGGSRKWCSVHRTGTHNDDECYEQGGKR---LGQALSACTQCAQCSGTKKDN--------------STQAEEQNSSEDREEFDAGFMLTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 737
P FD+ QMQ+TMR++F+DEQ R +KG++AGRG AM TS I C C E GH + CP + +++ +K+ G+ KWCSVH T TH+D+ECY QG KR G+A SACT C CS +D T+ E + S D + F GFM AT RTF A G + L+DSGA+ET DD+LIP
Sbjct: 199 PSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCP---NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397
BLAST of mRNA_P-littoralis_Contig800.13.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI) HSP 1 Score: 144 bits (364), Expect = 1.480e-38 Identity = 88/203 (43.35%), Postives = 114/203 (56.16%), Query Frame = 3
Query: 189 PYFDIDQMQSTMRHMFIDEQSRNGSKGRLAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKEKPGGGSRKWCSVHRTGTHNDDECYEQGGKR-------LGQALSACTQCAQCSGT--KKDNSTQAEEQN------SSEDREEFDAGFMLTATRDARTFVPDAEGVTLLIDSGATETFLDDQLIPGLKDRM 752
P F+++ MQ+TM HM +DEQSR GSKG +AGRG M S C C E+GH + C Q + ++ K KP G + KWC H T ++D+ECY QG KR +A SAC CA S T +K+ +T E + SS D +E D GFM TR +AEGVTLL++ GATET DD+LIP LKD +
Sbjct: 64 PNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQETCFGCGEKGHIRRNCLQRRGK---GRQRKTKPAGAT-KWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTTAKEASSTKAAIDSSTDGDESDEGFMYATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHLKDNV 262
BLAST of mRNA_P-littoralis_Contig800.13.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE) HSP 1 Score: 152 bits (385), Expect = 1.550e-38 Identity = 88/203 (43.35%), Postives = 115/203 (56.65%), Query Frame = 3
Query: 189 PYFDIDQMQSTMRHMFIDEQSRNGSKGRLAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKEKPGGGSRKWCSVHRTGTHNDDECYEQGGKR---LGQALSACTQCAQCSGTKKD--------------NSTQAEEQNSSEDREEFDAGFMLTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 737
P FD+ QMQ+TMR++F+DEQ R +KG++AGRG AM TS I C C E GH + CP + +++ +K+ G+ KWCSVH T TH+D+ECY QG KR G+A SACT C CS +D T+ E + S D + F GFM AT RTF A G + L+DSGA+ET DD+LIP
Sbjct: 199 PSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCP---NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397
BLAST of mRNA_P-littoralis_Contig800.13.1 vs. uniprot
Match: A0A6H5KW99_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW99_9PHAE) HSP 1 Score: 143 bits (361), Expect = 2.050e-38 Identity = 85/203 (41.87%), Postives = 112/203 (55.17%), Query Frame = 3
Query: 189 PYFDIDQMQSTMRHMFIDEQSRNGSKGRLAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKEKPGGGSRKWCSVHRTGTHNDDECYEQGGKR---LGQALSACTQCAQCSGTKKD--------------NSTQAEEQNSSEDREEFDAGFMLTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 737
P FD+ QMQ+TMR++F+DEQ R +KG++AGR AM TS I C C E GH + CP + +++ +K G+ KWCSVH T TH+D+ECY QG KR G+ALSACT C CS +D T+ E + S D + F GFM AT RTF A G + L+DS A+ET D++L P
Sbjct: 33 PSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRVFAMATKTSGPI-CFECNEPGHVRRNCP---NRQREGHRAKRTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKALSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSAASETMFDNRLNPN 231
BLAST of mRNA_P-littoralis_Contig800.13.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE) HSP 1 Score: 151 bits (382), Expect = 2.050e-38 Identity = 86/192 (44.79%), Postives = 119/192 (61.98%), Query Frame = 3
Query: 189 PYFDIDQMQSTMRHMFIDEQSRNGSKGRLAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKEKPGGGSRKWCSVHRTGTHNDDECYEQGGKR------LGQALSACTQCAQCSGTKK--DNSTQAEEQNSSEDREEFDAGFML-TATR-DARTFVPDAEGVTLLIDSGATETFLDDQLIP 734
P F++ M STMR++F+DEQSR G KGR+AGRG AM T+ DIICH C E GH + CP++K+ K K KP G + KWCS H T +H+D+ECY+QGGKR + +AC+ C CS K D++ + + + D + FD+GFM T +R R F + GV L++DS A+ET D++LIP
Sbjct: 219 PTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMAT-TASDIICHSCYEPGHIRRNCPKIKNRAK----KKTKPAGAT-KWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKKDDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIP 404
BLAST of mRNA_P-littoralis_Contig800.13.1 vs. uniprot
Match: A0A6H5K8D4_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8D4_9PHAE) HSP 1 Score: 150 bits (380), Expect = 7.090e-38 Identity = 88/203 (43.35%), Postives = 116/203 (57.14%), Query Frame = 3
Query: 189 PYFDIDQMQSTMRHMFIDEQSRNGSKGRLAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKEKPGGGSRKWCSVHRTGTHNDDECYEQGGKRL---GQALSACTQCAQCSGT--------------KKDNSTQAEEQNSSEDREEFDAGFMLTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 737
P FD+ QMQ+TMR++F+DEQ R +KG++AGRG AM TS I C C E GH + CP + +++ +K+ G+ KWCSVH T TH+D+ECY QG RL G+A SACT C CS K+ +T+ E + S D + F GFM AT RTF A G + L+DSGA+ET DD+LIP
Sbjct: 318 PSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCP---NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYSQGATRLERTGKAFSACTHCMHCSTQSGDTHAKPTTTETPKETETTEKAEIDFSYDEDAFKGGFMYHATCSKGSRRTFTTTATGTSALVDSGASETMFDDRLIPN 516
BLAST of mRNA_P-littoralis_Contig800.13.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE) HSP 1 Score: 150 bits (380), Expect = 7.180e-38 Identity = 87/203 (42.86%), Postives = 115/203 (56.65%), Query Frame = 3
Query: 189 PYFDIDQMQSTMRHMFIDEQSRNGSKGRLAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKEKPGGGSRKWCSVHRTGTHNDDECYEQGGKR---LGQALSACTQCAQCSGTKKD--------------NSTQAEEQNSSEDREEFDAGFMLTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 737
P FD+ QMQ+TMR++F+DEQ R +KG++AGRG AM TS I C C E GH + CP + +++ +K+ G+ KWCSVH T TH+D+ECY QG KR G+A SACT C CS +D T+ E + S D + F GFM AT RTF A G + L+DSGA+ET D++LIP
Sbjct: 218 PSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCP---NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 416
BLAST of mRNA_P-littoralis_Contig800.13.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE) HSP 1 Score: 150 bits (380), Expect = 7.250e-38 Identity = 87/203 (42.86%), Postives = 115/203 (56.65%), Query Frame = 3
Query: 189 PYFDIDQMQSTMRHMFIDEQSRNGSKGRLAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKEKPGGGSRKWCSVHRTGTHNDDECYEQGGKR---LGQALSACTQCAQCSGTKKD--------------NSTQAEEQNSSEDREEFDAGFMLTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 737
P FD+ QMQ+TMR++F+DEQ R +KG++AGRG AM TS I C C E GH + CP + +++ +K+ G+ KWCSVH T TH+D+ECY QG KR G+A SACT C CS +D T+ E + S D + F GFM AT RTF A G + L+DSGA+ET D++LIP
Sbjct: 199 PSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCP---NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397
BLAST of mRNA_P-littoralis_Contig800.13.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE) HSP 1 Score: 150 bits (380), Expect = 7.650e-38 Identity = 87/203 (42.86%), Postives = 115/203 (56.65%), Query Frame = 3
Query: 189 PYFDIDQMQSTMRHMFIDEQSRNGSKGRLAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKEKPGGGSRKWCSVHRTGTHNDDECYEQGGKR---LGQALSACTQCAQCSGTKKDN--------------STQAEEQNSSEDREEFDAGFMLTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 737
P FD+ QMQ+TMR++F+DEQ R +KG++AGRG AM TS I C C E GH + CP + +++ +K+ G+ KWCSVH T TH+D+ECY QG KR G+A SACT C CS +D T+ E + S D + F GFM AT RTF A G + L+DSGA+ET D++LIP
Sbjct: 199 PSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCP---NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig800.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig800.13.1 >prot_P-littoralis_Contig800.13.1 ID=prot_P-littoralis_Contig800.13.1|Name=mRNA_P-littoralis_Contig800.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=181bp MQSTMRHMFIDEQSRNGSKGRLAGRGIAMTIATSPDIICHICKERGHKKWback to top mRNA from alignment at P-littoralis_Contig800:56735..57519- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig800.13.1 ID=mRNA_P-littoralis_Contig800.13.1|Name=mRNA_P-littoralis_Contig800.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=785bp|location=Sequence derived from alignment at P-littoralis_Contig800:56735..57519- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig800:56735..57519- >mRNA_P-littoralis_Contig800.13.1 ID=mRNA_P-littoralis_Contig800.13.1|Name=mRNA_P-littoralis_Contig800.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=543bp|location=Sequence derived from alignment at P-littoralis_Contig800:56735..57519- (Pylaiella littoralis U1_48)back to top |