mRNA_P-littoralis_Contig80.82.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig80.82.1
Unique NamemRNA_P-littoralis_Contig80.82.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig80.82.1 vs. uniprot
Match: A0A6C0ATX3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ATX3_9ZZZZ)

HSP 1 Score: 79.0 bits (193), Expect = 5.730e-15
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  103 FKEQACRRNINVSISFDEYSGIVRTACWYCGDFTYKGYSGVDRVQNAGTYENDNVVPCCKTCNFMKGSLSVNDFLGKVKHIARQQHSL 366
            +K  A  +N+  +IS+D+Y  IV   C+YC     +G++G+DR      Y +DN V CCK CN++KGS S + F+ +V+HI   Q+ +
Sbjct:   53 YKRNADIKNLEFTISYDDYVNIVEQYCYYCSIIQERGFNGIDRKDQTKGYIDDNCVSCCKMCNYLKGSTSDDVFIKRVQHILTFQNKI 140          
BLAST of mRNA_P-littoralis_Contig80.82.1 vs. uniprot
Match: A0A6C0KJT0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KJT0_9ZZZZ)

HSP 1 Score: 79.3 bits (194), Expect = 8.880e-15
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   73 RTDVVYRWRVFKEQACRRNINVSISFDEYSGIVRTACWYCGDFTYKGYSGVDRVQNAGTYENDNVVPCCKTCNFMKGSLSVNDFLGKVKHIARQQHSL 366
            RT++  ++R +++    R +   + +DE+  IV   C+YCG       +G+DR+ +   Y  DN V CCK CN+MKGSLS++ F+ + +HI   Q+ +
Sbjct:  220 RTNIYEKYRCYQKACVERCLEFRLRYDEFLNIVNNECYYCGYVNSNFVNGIDRLDSNEGYILDNCVSCCKMCNYMKGSLSIDIFIKRAEHILTNQNKI 317          
BLAST of mRNA_P-littoralis_Contig80.82.1 vs. uniprot
Match: A0A6C0I5H7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0I5H7_9ZZZZ)

HSP 1 Score: 79.3 bits (194), Expect = 9.340e-15
Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   94 WRVFKEQACRRNINVSISFDEYSGIVRTACWYCGDFTYKGYSGVDRVQNAGTYENDNVVPCCKTCNFMKGSLSVNDFLGKVKHIARQQHSL 366
            + ++   A  +N+  +IS+D+Y  IV  +C+YCG    KG++G+DR      Y  +N V CCK CN+MKGS S   F+ + +HI   Q+ +
Sbjct:  260 YNIYSRNAGVKNLEFTISYDDYVAIVEKSCYYCGILQEKGFNGIDRKDQTKGYILENCVSCCKLCNYMKGSTSNEVFIKRAEHILTFQNKI 350          
BLAST of mRNA_P-littoralis_Contig80.82.1 vs. uniprot
Match: A0A6C0D6P5_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0D6P5_9ZZZZ)

HSP 1 Score: 78.2 bits (191), Expect = 1.830e-14
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 1
Query:   70 RRTDVVYRWRVFKEQACRRNINVSISFDEYSGIVRTACWYCGDFTYKGYSGVDRVQNAGTYENDNVVPCCKTCNFMKGSLSVNDFLGKVKHI 345
            ++TD    + ++K  A  + ++ SISF+EY  +    C+YC      G++G+DR +    YE +N V CCK CN++KGSLS   FL ++ HI
Sbjct:  125 KKTDKNQNYNIYKRTANLKQLDFSISFEEYVLLTEKECYYCNMIQQIGFNGIDRKEQTLGYELNNCVSCCKMCNYIKGSLSEQTFLKRITHI 216          
BLAST of mRNA_P-littoralis_Contig80.82.1 vs. uniprot
Match: A0A6C0JA70_9ZZZZ (DUF4338 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JA70_9ZZZZ)

HSP 1 Score: 77.4 bits (189), Expect = 4.550e-14
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  103 FKEQACRRNINVSISFDEYSGIVRTACWYCGDFTYKGYSGVDRVQNAGTYENDNVVPCCKTCNFMKGSLSVNDFLGKVKHI 345
            +K+ + +RNI  +IS  EY  I+   C YCG F  +G +G+DRV +   YE  N+VPCCKTCN +KG+L++  F  K+K+I
Sbjct:  365 YKKSSAKRNIKFNISETEYINILTYPCKYCGCFN-QGANGIDRVHSELPYEIGNIVPCCKTCNSLKGTLTLLQFKQKLKNI 444          
BLAST of mRNA_P-littoralis_Contig80.82.1 vs. uniprot
Match: A0A6C0HCA8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HCA8_9ZZZZ)

HSP 1 Score: 77.0 bits (188), Expect = 5.770e-14
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   73 RTDVVYRWRVFKEQACRRNINVSISFDEYSGIVRTACWYCGDFTYKGYSGVDRVQNAGTYENDNVVPCCKTCNFMKGSLSVNDFLGKVKHIARQQHSL 366
            RT++  ++R++++    R +   +SFDE+  IV   C+YCG       +G+DR+ +   Y  DN V CCK CN+MK SLS++ F+ + +H    Q+ +
Sbjct:  222 RTNINEKFRLYQKSCLERCLEFKLSFDEFISIVNNDCFYCGYKNSDFVNGIDRIDSKKGYILDNCVACCKMCNYMKASLSIDVFIKRAEHTLTYQNRI 319          
BLAST of mRNA_P-littoralis_Contig80.82.1 vs. uniprot
Match: A0A6C0D3N7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0D3N7_9ZZZZ)

HSP 1 Score: 75.9 bits (185), Expect = 1.260e-13
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  103 FKEQACRRNINVSISFDEYSGIVRTACWYCGDFTYKGYSGVDRVQNAGTYENDNVVPCCKTCNFMKGSLSVNDFLGKVKHIARQQHSL 366
            +K  A  +N+  +IS+D+Y  IV   C+YC     +G++G+DR      Y  +N V CCK CN++KGS S + F+ +V+HI   Q+ +
Sbjct:  138 YKRNADIKNLEFTISYDDYVNIVEQNCYYCSIIQERGFNGIDRKDQTKGYIVENCVSCCKMCNYLKGSTSDDVFIKRVEHILTFQNKI 225          
BLAST of mRNA_P-littoralis_Contig80.82.1 vs. uniprot
Match: A0A3G4ZQS3_9VIRU (Uncharacterized protein n=1 Tax=Barrevirus sp. TaxID=2487763 RepID=A0A3G4ZQS3_9VIRU)

HSP 1 Score: 71.6 bits (174), Expect = 4.490e-12
Identity = 35/73 (47.95%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  124 RNINVSISFDEYSGIVRTACWYCGDFTYKGYSGVDRVQNAGTYENDNVVPCCKTCNFMKGSLSVNDFLGKVKH 342
            RN   +IS + Y  + +  C YCG+   KG++G DRV N   YE+DN VPCC  CNFMK   SV +F   VKH
Sbjct:  291 RNYEFNISKEFYYDLTKQPCDYCGEMNEKGWNGADRVINEIGYEDDNSVPCCTICNFMKSDYSVAEF---VKH 360          
BLAST of mRNA_P-littoralis_Contig80.82.1 vs. uniprot
Match: A0A843A3E2_9ARCH (Uncharacterized protein n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A843A3E2_9ARCH)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-11
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 1
Query:  103 FKEQACRRNINVSISFDEYSGIVRTACWYCG-----------DFTYKG----YSGVDRVQNAGTYENDNVVPCCKTCNFMKGSLSVNDFLGKVKHI 345
            +K  A  R    +++ +E+  + ++ C+YCG           + + KG    Y+G+DRV N+  YE  N VPCCKTCN MKG L  N+F  K+K I
Sbjct:   26 YKRTARIREYAFTLTKEEFLELTKSDCFYCGTEPKQYKSKYGNKSRKGIPFVYNGIDRVDNSVGYEYANCVPCCKTCNRMKGCLGFNEFTKKIKEI 121          
BLAST of mRNA_P-littoralis_Contig80.82.1 vs. uniprot
Match: A0A6C0ITL0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ITL0_9ZZZZ)

HSP 1 Score: 69.3 bits (168), Expect = 2.950e-11
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   91 RWRVFKEQACRRNINVSISFDEYSGIVRTACWYCGDFTYKGY-SGVDRVQNAGTYENDNVVPCCKTCNFMKGSLSVNDFLGKVKHI 345
            R++ ++  A ++ IN  +S DE   +   +C+YC      G+ +G+DR  +   Y  DNVV CCK CN++KGSL  NDFL  V HI
Sbjct:  274 RFKYYERCAIQKGINFDLSKDECCNLFDKSCYYCKHKDDNGFLNGIDRKSSYLGYIKDNVVTCCKMCNYIKGSLGHNDFLQIVDHI 359          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6C0ATX3_9ZZZZ5.730e-1538.64Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0KJT0_9ZZZZ8.880e-1534.69Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0I5H7_9ZZZZ9.340e-1537.36Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0D6P5_9ZZZZ1.830e-1438.04Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0JA70_9ZZZZ4.550e-1445.68DUF4338 domain-containing protein n=1 Tax=viral me... [more]
A0A6C0HCA8_9ZZZZ5.770e-1434.69Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0D3N7_9ZZZZ1.260e-1337.50Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A3G4ZQS3_9VIRU4.490e-1247.95Uncharacterized protein n=1 Tax=Barrevirus sp. Tax... [more]
A0A843A3E2_9ARCH1.030e-1137.50Uncharacterized protein n=1 Tax=Thermoplasmata arc... [more]
A0A6C0ITL0_9ZZZZ2.950e-1140.70Uncharacterized protein (Fragment) n=1 Tax=viral m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig80contigP-littoralis_Contig80:535814..536188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog10506.Q98540_PBCV1
Model size375
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.7e-08
EggNOG OGs4QC9Q@10239|Viruses,4R0EV@35237|dsDNA viruses no RNA stage
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791649.2450264-CDS-P-littoralis_Contig80:535813..5361881680791649.2450264-CDS-P-littoralis_Contig80:535813..536188Pylaiella littoralis U1_48CDSP-littoralis_Contig80 535814..536188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig80.82.1prot_P-littoralis_Contig80.82.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig80 535814..536188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig80.82.1

>prot_P-littoralis_Contig80.82.1 ID=prot_P-littoralis_Contig80.82.1|Name=mRNA_P-littoralis_Contig80.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
RRIRALQNKRYRRPTAYEKHLKARRTDVVYRWRVFKEQACRRNINVSISF
DEYSGIVRTACWYCGDFTYKGYSGVDRVQNAGTYENDNVVPCCKTCNFMK
GSLSVNDFLGKVKHIARQQHSLME*
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mRNA from alignment at P-littoralis_Contig80:535814..536188-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig80.82.1 ID=mRNA_P-littoralis_Contig80.82.1|Name=mRNA_P-littoralis_Contig80.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig80:535814..536188- (Pylaiella littoralis U1_48)
CGACGCATACGAGCCTTGCAAAATAAACGATACCGAAGGCCCACCGCATA CGAGAAGCACTTAAAAGCCAGGAGAACGGATGTGGTCTACAGGTGGCGCG TGTTCAAGGAACAGGCCTGTAGGAGAAATATCAATGTGTCGATTAGCTTT GACGAGTACAGCGGCATTGTCCGTACAGCGTGCTGGTACTGCGGCGACTT TACATACAAGGGGTATTCAGGAGTAGACCGCGTGCAGAACGCAGGAACGT ACGAAAACGACAACGTTGTGCCTTGCTGTAAAACTTGCAACTTTATGAAA GGGTCACTTTCGGTTAACGACTTCTTGGGGAAGGTCAAGCACATCGCAAG ACAGCAACACTCTTTAATGGAATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig80:535814..536188-

>mRNA_P-littoralis_Contig80.82.1 ID=mRNA_P-littoralis_Contig80.82.1|Name=mRNA_P-littoralis_Contig80.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig80:535814..536188- (Pylaiella littoralis U1_48)
CGACGCATACGAGCCTTGCAAAATAAACGATACCGAAGGCCCACCGCATA
CGAGAAGCACTTAAAAGCCAGGAGAACGGATGTGGTCTACAGGTGGCGCG
TGTTCAAGGAACAGGCCTGTAGGAGAAATATCAATGTGTCGATTAGCTTT
GACGAGTACAGCGGCATTGTCCGTACAGCGTGCTGGTACTGCGGCGACTT
TACATACAAGGGGTATTCAGGAGTAGACCGCGTGCAGAACGCAGGAACGT
ACGAAAACGACAACGTTGTGCCTTGCTGTAAAACTTGCAACTTTATGAAA
GGGTCACTTTCGGTTAACGACTTCTTGGGGAAGGTCAAGCACATCGCAAG
ACAGCAACACTCTTTAATGGAATAA
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