mRNA_P-littoralis_Contig80.81.16 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig80.81.16
Unique NamemRNA_P-littoralis_Contig80.81.16
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig80.81.16 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.580e-28
Identity = 84/180 (46.67%), Postives = 112/180 (62.22%), Query Frame = 1 
Query:  688 NGCPLVRYT*LRGDA----PQNTFVGRLLDSFLWVLVGSRSRYSPLWRVLGMSLDAKVEEADRTGVGFGAIDEWVARHPFSFLGKVLFG--SGFVLKGENDGVSRRAKVMIRAVGETLVVDSLFLALSVVSGGW-DGNLTGVAGISALFSVLELLTELQYYVAEVGAVL-----EPISSS 1191
            NGC  ++   + G +    P++     +LD F+WV+VGSRS+ S L R+ GM+    V+  +++G G   ID  V  HP+S LG+ LF    G  L G +D  +RR+ VM+RAVGETLVVDSLFLALS+ S  W DG   G+   S +FSVLELLTELQYYV+E  A +     EP S+S
Sbjct:  259 NGCHDLKLETVWGGSRFVVPRSALRWPILDGFMWVVVGSRSKSSSLMRLCGMAGYTPVDRLEQSGFGLSLIDRIVDHHPYSLLGRALFSYPHGHHLPG-SDEATRRSWVMVRAVGETLVVDSLFLALSLSSETWEDGVSIGI--FSLIFSVLELLTELQYYVSEARADMVTGGEEPTSTS 435
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BLAST of mRNA_P-littoralis_Contig80.81.16 vs. uniprot
Match: A0A6H5JME9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 9.960e-16
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:  988 AKVMIRAVGETLVVDSLFLALSVVS-GGWDGNLTGVAGISALFSVLELLTELQYYVAEVGAVLEPI 1182
            A+VM+R+VGETLVVD LFLALS VS GGWDG+L G+AGISA+FS L+LLTEL+YYV    AVLE +
Sbjct:  312 ARVMVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGASAVLERV 377
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.81.16 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFA4_9PHAE1.580e-2846.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME9_9PHAE9.960e-1671.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig80contigP-littoralis_Contig80:562839..564682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1566
Hectar predicted targeting categoryother localisation
Exons2
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791649.176567-UTR-P-littoralis_Contig80:562838..5632701680791649.176567-UTR-P-littoralis_Contig80:562838..563270Pylaiella littoralis U1_48UTRP-littoralis_Contig80 562839..563270 +
1680791649.1890213-UTR-P-littoralis_Contig80:563548..5639441680791649.1890213-UTR-P-littoralis_Contig80:563548..563944Pylaiella littoralis U1_48UTRP-littoralis_Contig80 563549..563944 +
1680791649.214513-UTR-P-littoralis_Contig80:564346..5646821680791649.214513-UTR-P-littoralis_Contig80:564346..564682Pylaiella littoralis U1_48UTRP-littoralis_Contig80 564347..564682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791649.201712-CDS-P-littoralis_Contig80:563944..5643461680791649.201712-CDS-P-littoralis_Contig80:563944..564346Pylaiella littoralis U1_48CDSP-littoralis_Contig80 563945..564346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig80.81.16prot_P-littoralis_Contig80.81.16Pylaiella littoralis U1_48polypeptideP-littoralis_Contig80 563945..564346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig80.81.16

>prot_P-littoralis_Contig80.81.16 ID=prot_P-littoralis_Contig80.81.16|Name=mRNA_P-littoralis_Contig80.81.16|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MSLDAKVEEADRTGVGFGAIDEWVARHPFSFLGKVLFGSGFVLKGENDGV
SRRAKVMIRAVGETLVVDSLFLALSVVSGGWDGNLTGVAGISALFSVLEL
LTELQYYVAEVGAVLEPISSSSTAISGNSIPNV*
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mRNA from alignment at P-littoralis_Contig80:562839..564682+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig80.81.16 ID=mRNA_P-littoralis_Contig80.81.16|Name=mRNA_P-littoralis_Contig80.81.16|organism=Pylaiella littoralis U1_48|type=mRNA|length=1844bp|location=Sequence derived from alignment at P-littoralis_Contig80:562839..564682+ (Pylaiella littoralis U1_48)
GATGAGGGTGCTGCGCAAGCCCATGGAAGGGCTACACAGCAGTTAGCTGT
CGCATTGTACTAACCGATCAATGGGTTTGCCCAAGTGCCTTTCCTGAACT
CGTGTTGCCTTGTTTGTTTGTTTCGAATTTTTCCTGGCCCAATGTGCTGA
TGTGCAGCTCGGCGAGAAGGAACGTGGCAGCATGCCTGCGTTCGTAGTTT
TTAGTACTTGTACCCTTACCTAGCGTTTCACACTGTCTACTTCATTTTTA
AAAACGTTGTTCAGTGTTCCCAGCTATCGCTTACAATGTTTGTCATTTGA
ATTTTGGCAACTGTGGGCTTGTAACAGACCCTCACCCTCCTCGGTCTTAC
GGAACCGACATGCGAGATTGGGCCGGCATTCCCGATGAAACTGAGATTTC
GCGAGTGCGGGCCGCTGGGGCGAAAGACTCTGGTAAGCCACGCATATGTA
CGCCGTTAAATTTCTGCCACGCACAGCGCGGCAAATTGGCGGCGGTTCAA
CTTTCCACCTATTTTCGAGTGCTGGACAAAATATGCAAGGATGCCGCCTG
CGTAGTGTGATCCAAATTGCCACAAACTTGTTTTGAGCGTGTGGGTAATG
CGGGCGTGACAAGTCTTGGCGCGGAATATTTGGGTAGAATACATTTGCAT
GATTGTTTCTCGGCTTTATGTGGTCTGACTGCGTGTTGCCCCCTTCACTC
CAAACCACAGGTAGAAAACAGCCCTCGATCGTGAAATTGCTGAACTTCAT
AACCGACACTTGGCATGTCGCTGTACCGGTGATTGATGATGTCACGGACG
TGTTGTTGCTGACTTCGACCGCCGACTCTACAAGCTTTTTTTGGTGGATC
TGCCTCATCGCGTTGGGTTTAGCTGATATTGAACGCTTGTGGCTACTCTT
TTGACGATAGTCCTGCTACCTTTCCTTTGGTGCTGGGACATTGTACGCTC
TCATTTCTGTGGGAGAACGGCTGCCCATTGGTTCGCTATACTTAACTGCG
GGGTGACGCACCGCAAAATACTTTTGTTGGGCGTCTCTTGGATTCGTTCC
TGTGGGTTTTAGTCGGATCGAGGTCTCGATACAGTCCGCTGTGGCGGGTG
TTGGGGATGAGTCTGGATGCAAAGGTTGAAGAAGCAGACCGTACTGGGGT
AGGGTTTGGAGCAATAGACGAGTGGGTAGCTCGTCACCCATTCAGTTTCT
TAGGCAAGGTTTTATTCGGTAGTGGGTTTGTTTTGAAAGGAGAAAACGAC
GGCGTCTCGAGGCGGGCTAAGGTCATGATTAGGGCCGTGGGCGAAACGCT
GGTCGTTGATAGCTTGTTTTTGGCGCTCTCTGTGGTATCGGGAGGGTGGG
ATGGGAATCTGACAGGTGTAGCCGGGATCTCTGCGCTCTTCTCAGTGCTT
GAGCTCCTGACAGAGTTGCAATACTACGTCGCAGAAGTTGGCGCTGTACT
GGAGCCGATTAGCTCTTCAAGCACCGCGATTTCCGGAAACTCCATCCCAA
ACGTGTAAATGCTTGGTGGTTCGCGCCCGGTGCGGTGTTTTTGGTTTGAT
AGTAACACATGATCATGTTGTGGTGTGTTGGGCGAAAAACAATGGAGCGA
CACATGTAGCGCGTGCCCTCGTGCGGTGACCAACTTTATTGTTGTGCGCA
ATTCGAGAGCAGGAGAGGCGAGCGCCCTTGGTTGCCGCCGTCGTCGTGAT
GTTTTTGGTGCAAAGTGTGCCCGACCGGTGGAGGGTTGTCCCGGTGCATG
AAAAACGTTTTTGAATTAAATACAATTACTTTCCGCTGTCATACCGTGGC
CGCCGCCGCCTCTGCGCCCATTTTTACGCGGCCACCAATCCGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig80:562839..564682+

>mRNA_P-littoralis_Contig80.81.16 ID=mRNA_P-littoralis_Contig80.81.16|Name=mRNA_P-littoralis_Contig80.81.16|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig80:562839..564682+ (Pylaiella littoralis U1_48)
ATGAGTCTGGATGCAAAGGTTGAAGAAGCAGACCGTACTGGGGTAGGGTT
TGGAGCAATAGACGAGTGGGTAGCTCGTCACCCATTCAGTTTCTTAGGCA
AGGTTTTATTCGGTAGTGGGTTTGTTTTGAAAGGAGAAAACGACGGCGTC
TCGAGGCGGGCTAAGGTCATGATTAGGGCCGTGGGCGAAACGCTGGTCGT
TGATAGCTTGTTTTTGGCGCTCTCTGTGGTATCGGGAGGGTGGGATGGGA
ATCTGACAGGTGTAGCCGGGATCTCTGCGCTCTTCTCAGTGCTTGAGCTC
CTGACAGAGTTGCAATACTACGTCGCAGAAGTTGGCGCTGTACTGGAGCC
GATTAGCTCTTCAAGCACCGCGATTTCCGGAAACTCCATCCCAAACGTGT
AA
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