mRNA_P-littoralis_Contig80.59.44 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig80.59.44 vs. uniprot
Match: D8LFM1_ECTSI (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM1_ECTSI) HSP 1 Score: 891 bits (2302), Expect = 8.050e-281 Identity = 798/1974 (40.43%), Postives = 899/1974 (45.54%), Query Frame = 3
Query: 699 GADQLLWATTVAAGNCKCSIPVLVSSDWDGLVDEMEVPPAAGGSXXXXXXXXGDGSYRGAVQSGASFEGYSAPGGKGVACSVRFQTAWTEKPPPECLFLDGLTELFISKIRDANCVPGRAFAPAVSTTVQQSWEWTKPETPATPMPAPALPWEGSYG-----------------------GGCETREEDSPPAPAAGSAPAVPASSETTATVREWKGRRWRSGVAGERGASLVSPVADDSNAXXXXXXXXXLLRSVGGANESPGGVTVPLWGPHEDPLVSIFVRVRWTDLREGLVEESQHYTTLEPLPEESRAG--GVEGGVTGAGSGGRWFVSPRWRPQRGVAAGASNXXXXXXXXXXXXXXVSGAVNYPTGXXXXXXXXXXDGQLGDACCRLLAALVLTTAMHPGTLMADLGAGPLQDGPTALAEDYGKAAAARLSAETRGAVEEMCSGGRSPSIDHDEIDAILRHLWQPQDGEEXXXXXXXXXXXXXLNNLEGEVTPAAAGFAAEQRDRGGXGDAGRPSTGEYGAAXXXXXXXXXXXXXXXXXPSEWRVVYPEAQXXXXXXXXXXXXXXXRVARGGSSAAVAXXXXXXXXXXXXERRGLRQGSAATGIATXXXXXXXISFSPSGSRGPSDGETGGGGWGSRAKLPRTSGGGGDMVGVRAAAGGQEKSLWAWVERGGVPIGRLLSLLSLRVARCDDLGSMSLLWMSFVRDVRLLWEDGARIPRMNPIPEVDGTSMFDRSASSATGQDQSVASQLRRGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARLL--YPDTRTCLVWQKLQMLNCCRAEV-VPGELELPVSLPAGGVPEGIDDSVEREXXXXXXXXXXXXXDFFDTREYCQTSEDE-------------ECSAV----GGRSRGEGVRREIGVDAGGAYAGLGGGDGDDGGGC-----GKGGGIERGGNGDIERGGFAAAATAAGDXXXXXNTLGDXXXXXXXXXXXXGDPGRSEDDADREGDAAERNPSDAXXXXXXXXXXSTPAGTGTGT------FAAXXDXXGLRGXXXXXXXXXXXX--ISDPGEASGADDTRRGGGVRGSAAVAEXXXXXXXXXXXXXXXXXXAR-GPGRVAADAEEPQ----GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADRKDYNPPEDIALREEKE--GEXXXXXXXGAEGAPCGEESATSTPPIQ---EEHAPPSVGGFVHXXXXXXXXXXXXXXTPHGGRLSSPASFVDGKTPPSTEVELPGTVAAPSETTTTAMVESINESPSEKLKTISSS-AVSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----RLLVSGAAVRSPRLQETGPVTGDMLEQEALGQASAYRGREVLLADMKAFRKANDSNDIREGGGAXXXXXXXEGGGTVFADFVRWYRPECWQSTATPEGWVKASETRAGGSAEDDKRLAWPGQGQVLWKPPSASLQQTATHPPEGAGEAAGASVYPPADPSASRSTAPPSAVTLAGWLSCWEAARTIVAREAEEAEEQNGLLLPRPSLFSGVKEGEKALHFLETISPGPLLVQLLSAVLGLSVFILEEACSGAGGLPGVQVSVDAARAKVVEAVELLSRSSTATAGGDACSAEWAAGTTSEAGARGXXXXXXXXXXXXXXXXXXXXXDXXXXXGSGARKEDCADAGGVGSMSRKNFSGPKEISEKTNSLSPFRAALASADVACVAVRKAETALARAVSLQRSLPGQRELVNAVVVACSG----GGGQTGEAPVSARPQKEFLRDLLLAQGIHKTPGSELDELLASFDEEHRREELKDGNGRSSIDGSGXXXXXXXXPHTREYVLRCQTPSPFYGRNLGRGQMDTYPTPPSRMYAKMDGKNLRVGLSLCESDI 6389
G D LLWATTVAAGNC+CS+PVLVS DWDGLV++ D S VQSGAS +GYS PG KGVACSVRFQTAWTEKP ECLFLDGLT+LF+SKIRDA+C+PGRAFAP VSTTVQQSWEWTKPE A +PAPALPWEG GG E P G P P TT AG+RG V +A LLR++GG E G P+WGP EDPLVSIFVRVRWTDLREGLVEESQHYTTLEPLPEE+RAG G +GG +GAG GG WFVSPR G+LGDAC RLLAALVLTTAMHPGTLMADLGAG L+DG TALA+DYGKAA+A+LS ETR AVEEMC +SPSI+HD+ID ILR+L Q GEE V PAA + D G A R ++ +W+ VYP A+ R+ GG +A A + G S SGS S ET M G R G +SLWAW ERGG PIGRLLSLLSLRVA CDDLGSMSLLWMSFVRDVRLLWEDGA I RM+PI VDGTSMFDR AS TGQD+SVASQLR + S R L YPDTRTCL+WQKLQMLNCCRAE L+L P+ V +G D E E FFDTREY QTSEDE CSA GG E D G G GGG D+ GG GG G G+ G +AA + + + +GD G +D ++ +R + TPA T T A + G+ G S G G + G +AA +R G G A+ G + N PE EKE G+ GA+ E +PPS + L+ + +P + E E P T + + + + PS K T+++ A+S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RLL SGAAVR PRLQE GPVT DML Q+ LGQA+AYRGREVLLADM AFR N GGG +G VFADFVRWYRPECWQ WV ASE R GG AEDDKRLAWPGQGQV+W+ Q + E A EAA A P D A PS TLAGWLSCW A V E LFSGV EGEKALHFLETISPGPLLVQLLSA+LGLSVF+LEEAC GA LP V+ SVD AR AL +AD ACVAV++AETAL+RAVSLQRSLPG+++LVN +V AC GGG E PVSARP KEFLRDLLLAQGI KTPGSELDELLAS+DEEHR XXXXXXXX T+EYVLRCQTP+PFY RN+GRGQM+ YPTPPSRMYAK DG NLRV LSLCESDI
Sbjct: 2 GVDHLLWATTVAAGNCRCSVPVLVSCDWDGLVED-------------------DSSGGVVVQSGASCKGYSTPGSKGVACSVRFQTAWTEKPSRECLFLDGLTDLFLSKIRDAHCLPGRAFAPIVSTTVQQSWEWTKPEEEAAQLPAPALPWEGGXXXXXXXXXXXXXXXXXXXXXDGRRGGTSLGE------PTVGGDPQGP----TTXXXXXX--------XAGDRGG-----VGSREDAVRQ------LLRAIGGGREQEIGT--PVWGPDEDPLVSIFVRVRWTDLREGLVEESQHYTTLEPLPEEARAGAGGADGGYSGAGVGGHWFVSPR------------------------------------------------GRLGDACSRLLAALVLTTAMHPGTLMADLGAGSLEDGRTALAQDYGKAASAKLSDETRKAVEEMCRRSQSPSINHDDIDLILRYLLHSQ-GEERA------------------VVPAANQGSGGGPDADGDNKARRVQP-PLPSSRWRQVHLGARQQDPRQSTEKWKQVYPRARGVTDDSSKR------RLQPGGGAAEPASVPN----------------DPSHGDVNRTMEASWAELSASGSGRASSYET--------------------MTGGR----GGRRSLWAWAERGGAPIGRLLSLLSLRVASCDDLGSMSLLWMSFVRDVRLLWEDGATIARMSPIAAVDGTSMFDRGAS-CTGQDRSVASQLRGSSQADGGSVDVSDDGSGGDGSLPPW-----------------------SDRSLVPYPDTRTCLIWQKLQMLNCCRAEGGAQMGLQLSSPPPSQDVGDGTADQGEGEKGPGDDEDEEA---FFDTREYYQTSEDEGSSGGTGGGLQDDRCSAGDVDRGGERSAEDDDVLASADRGTGEVGTGGGVRDEHGGDRDADDSAGGVRAEPGAGEDYEGVISAATSGDSNSAAESDAVGDRAGDLSGCNE-----GLPKDASENRPQQQQRGEGSSAQVLDDETAEITPASTAAATAVDLSKLGAGREELGVTGRAVTVVEGGDDRRSSSSTGGIDGEETVSPGDTTTETAASPIAPPLSAGTEEVAVVPSLASRLGEGEPASPTSSSPVPSLGDDANEALPCAVATETTMIGPEEEDVATIVAATSDEAMSVDEGGDNPTTQNMPEAEREEGEKEVGGKDEEELQQGADSPSXXXXXXXXXXXXXXXXEPSSPPSSPPPMETGARTDEVPRNGSADDGSDGLACKDTPPPSSSPANPEEETPDTTKSSLAAAGEVISDDRSTCPSPKASTMAAGEAISEISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISEALPEKRTAIIAMENSPDASDKAFGCPEAAPTAATGSAAAVGEEPLVPPMRRLLCSGAAVRPPRLQECGPVTEDMLRQQTLGQAAAYRGREVLLADMTAFRSEN-------GGG--------DGDAAVFADFVRWYRPECWQEATADGEWVSASEGRLGGRAEDDKRLAWPGQGQVVWRSAVTGRQVHGQNRDE-APEAAAADELSPGD-HLGLPPALPSPFTLAGWLSCWGQAGAAVRAEXXXXX-XXXXXXXXXXLFSGVTEGEKALHFLETISPGPLLVQLLSALLGLSVFVLEEACLGADSLPSVEASVDTART----------------------------------------------------------------------------------------------------------ALLAADGACVAVKRAETALSRAVSLQRSLPGKKDLVNDMVAACGDEEEKGGG---EVPVSARPHKEFLRDLLLAQGIQKTPGSELDELLASYDEEHRXXXXX------XXXXXXXXXXXXXXXETKEYVLRCQTPAPFYSRNVGRGQMEAYPTPPSRMYAKTDGSNLRVALSLCESDI 1646
BLAST of mRNA_P-littoralis_Contig80.59.44 vs. uniprot
Match: A0A6H5JCY7_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY7_9PHAE) HSP 1 Score: 785 bits (2026), Expect = 1.230e-240 Identity = 807/1890 (42.70%), Postives = 905/1890 (47.88%), Query Frame = 3
Query: 699 GADQLLWATTVAAGNCKCSIPVLVSSDWDGLVDEMEVPPAAGGSXXXXXXXXGDGSYRGAVQSGASFEGYSAPGGKGVACSVRFQTAWTEKPPPECLFLDGLTELFISKIRDANCVPGRAFAPAVSTTVQQSWEWTKPETPATPMPAPALPWEGSYGGGCETREEDSPPAPAAGSAPAVPASSETTATVREWKGRRWRSGVAGERGASLVSPVADDSNAXXXXXXXXXLLRSVGGANESPGGVTVPLWGPHEDPLVSIFVRVRWTDLREGLVEESQHYTTLEPLPEESR--AGGVEGGVTGAGSGGRWFVSPRWRPQRGVAAGASNXXXXXXXXXXXXXXVSGAVNYPTGXXXXXXXXXXDGQLGDACCRLLAALVLTTAMHPGTLMADLGAGPLQDGPTALAEDYGKAAAARLSAETRGAVEEMCSGGRSPSIDHDEIDAILRHLWQPQDGEEXXXXXXXXXXXXXL----NNLEGEVTPAAAGFAAEQRDRGGXGDAGRPSTGEYGAAXXXXXXXXXXXXXXXXXPSEWRVVYPEAQXXXXXXXXXXXXXXXRVARGGSSAAVAXXXXXXXXXXXXERRGLRQGSAATGI-ATXXXXXXXISFSPSGSRGPSDGETGGGGWGSRAKLPRTSGGGGDMVGVRAAAGGQEKSLWAWVERGGVPIGRLLSLLSLRVARCDDLGSMSLLWMSFVRDVRLLWEDGARIPRMNPIPEVDGTSMFDRSASSATGQDQSVASQLRRGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARLLYPDTRTCLVWQKLQMLNCCRAEVVPGELELPVSLPAGGVPEGIDDSVEREXXXXXXXXXXXXXDFFDTREYCQTSEDEECSA-VGGRSRGE-------GVRREIGV--DAGGAYAGLGGGDGDDGGGCGKGGGIERGGNGDIER----GG--------------FAAAATAAGDXXXXXNTLGDXXXXXXXXXXXXGDPGRSEDDADREGDAAERNPSD-------AXXXXXXXXXXSTPAGTGTGTFAAXXDXXGLRGXXXXXXXXXXXXISDPGEASGADDTRRGGG-----VRGSAAVAEXXXXXXXXXXXXXXXXXXARGPGRVAADAEE--------PQGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA---DRKDYNPPEDIALREEKEGEXXXXXXXGAEGAPCGEESATSTPPIQEEHAPPSVGGFVHXXXXXXXXXXXXXXTPHGGRLSSPASFVDGKTPPSTEVELP----GTVAAPSETTTTAMVESINESPSEKL----KTISSSAVSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLLVSGAAVRSPRLQETGPVTGDMLEQEALGQASAYRGREVLLADMKAFRKANDSNDIREGGGAXXXXXXXEGGGTVFADFVRWYRPECWQSTATPEGWVKASETRAGGSAEDDKRLAWPGQGQVLWKPPSASLQQTATHPPEGAGEAAGASVYPPADPSASRSTAPPSAVTLAGWLSCWEAARTIVAREAEEAEEQNGLLLPRPSLFSGVKEGEKALHFLETISPGPLLVQLLSAVLGLSVFILEEACSGAGGLPGVQVSVDAARAKVVEAVELLSRSSTATAGGDACSAEWAAGTTSEA-------GAR--GXXXXXXXXXXXXXXXXXXXXXDXXXXXGSGARKEDCADAGGVGSMSRKNFSGPKEISEKTNSLSPFRAALASADVACVAVRKAETALARAVSLQRSLPGQRELVNAVVVACSG----GGGQTGEAPVSARPQKEFLRDLLLAQGIHKTPGSELDELLASF 6131
G D LLWATTVAAGNCKCS+PVLVS DWDGLVD+ D S VQSGAS +GYS PG G+ACSVRF TAWTEKP ECLFLDGLT+LF+SKIRDA+C+PGRAFAP VSTTVQQSWEWTKPE A +PAPALPWEG GG T+ + E+ G G A LLR+VGG + P+WGP EDPLVSIFVRVRWTDLREGLVEESQHYTTLEPLPEE+R AGG +G +GAG GG NXXXXXXXXXXXXXX XXXXX G+LGDAC RLLAALVLTTAMHPGTLMADLGAG L+DG TALA+DYGKAA+A LS ETR AVE+MC +SPSI+HD+ID ILR+L Q GEE L NN V P+ Q G R ST +W+ VYP A+ GG++ ER + + + T +S S SG RA T M+G R +SLW W ERGG PIGRLLSLLSLRVA CDDLGSMSLLWMSFVRDVRLLWEDGA I RMNPI VDGTSMFD SAS TGQD+SVASQLR + +LYPDTRTCL+WQKLQMLNCCRAE P P P+ V +G D E FFDTREY QTSEDE S +GG + + G E G DA G A G G+ G GG++ G +GD + GG +AA + G+ + +GD G S + D DA+E +P + TPA T T A G+ + D + SG + S AE A P A A + P SXXXXX A + NP L+ E+E E XXXX E EE EE XXXXXXXXXXXXXX P S P +T VE+P G + + S + +P E++ K ++A XXXXXXXXXXXXXXXXXXXXXXXX RLL SGAAVR PRLQE+GPVT DML+Q+ LGQA AYRGREVLLADM AFR ND D R+ VFADFVRWYRPECWQ T WV ASE R GG AEDDKRLAWPGQGQV+WKP Q + E EA A P D A PS LAGWLS W A V E E P LFSGV EGEKALHFLETISPGPLLVQLLSA+LGLSVFILEEAC GAG LP V SVD AR KVVEAVELLS +ST DA G R G XXXXXXXXXXXXXXXX XXXXX A E A+ +E S +SLSPFR AL +AD ACVAV++AETAL+RAVSLQRSLPG+R+LVN +V AC GGG E VSARP KEFLRDLLLAQGI KTPGSELDELLAS
Sbjct: 2 GVDHLLWATTVAAGNCKCSVPVLVSCDWDGLVDD-------------------DSSGGVVVQSGASCKGYSTPGSTGIACSVRFHTAWTEKPSRECLFLDGLTDLFLSKIRDAHCLPGRAFAPIVSTTVQQSWEWTKPEEDAAQLPAPALPWEG--GGXXXXXXXXXFXXXXXXXXXXXXRRGGTS--LGEFPGGGDPQGPXXXXXXXXXXXXXXXXXAREDAVRQ--LLRAVGGGSGQES--RTPVWGPDEDPLVSIFVRVRWTDLREGLVEESQHYTTLEPLPEEARGGAGGADGSYSGAGVGGH----------------CDNXXXXXXXXXXXXXXXX------------XXXXXHRGRLGDACSRLLAALVLTTAMHPGTLMADLGAGSLEDGRTALAQDYGKAASAMLSDETRKAVEDMCRRSKSPSINHDDIDLILRYLLHSQ-GEEGAVATAANQGCGGLDADGNNKARRVQPSLPSSRWRQVHLGTRQQDRRQST------------------------EKWKQVYPRARGVTDDSSLRQLQP-----EGGAA----------------ERTSVPNDQSHRDVHGTMEASWAELSTSGSG----------------RASSDET------MMGGREG----RRSLWVWAERGGAPIGRLLSLLSLRVASCDDLGSMSLLWMSFVRDVRLLWEDGATIARMNPITAVDGTSMFDWSAS-CTGQDRSVASQLRGSRQADGGGADGSDDSSGRDGSLPPWSD---------------------HSLVLYPDTRTCLIWQKLQMLNCCRAEGAPQVDLQPSPPPSQDVGDGAADQGGGEKGPGDDEDEEA---FFDTREYYQTSEDEGSSGDIGGGLQDDQCGAGDVGRGGECGAEDDARGVVAASISGAGEGG----TVGGVQDGHDGDRDADDKAGGVHAEPXXXXXXXXXLSAATSGDGNSAAESDAVGDHAD------------GLSGCNEDLPKDASENHPQQQQRDEGSSAPVLDDETAEITPAPTAAAT-AVDLSKIGVGREELGVAGVAIAIVEDGDDRSGXXXXXXXXXXXXXXIISSGDTAETVASPIAPPLSAGTDEVAAV-PALAPATATQLREGEPASPTSSXXXXXLGDDANEALPCAVATKKTMIRPEEEDVATAVAATPDEAMSVNEGGDNPTTQNMLKAERE-EGEKXXXXXXE-----EELQQRVDSPFEEXXXXXXXXXXXXXXXXXXXXXXXXXXPSSPPSSPPPMETGART-----VEVPRNGDGDDCSDGFASEDTPPPSSSANPEEEMPGTAKASLAAAGEVVSDRYTCASPKASIXXXXXXXXXXXXXXXXXXXXXXXXSPEKQTAIIAMDNSPEALDNALGRPEVAPTAASGSTAAVGDGPLVPPMRRLLCSGAAVRPPRLQESGPVTEDMLKQQTLGQAPAYRGREVLLADMTAFRAENDGGD-RDA--------------AVFADFVRWYRPECWQETTADGEWVSASEGRLGGRAEDDKRLAWPGQGQVVWKPSVTGHQGQGQNWDETP-EADAADELSPGD-HLGLPPALPSPFKLAGWLSYWGQAGAAVQAEKEXXXXXXXXXXXXP-LFSGVTEGEKALHFLETISPGPLLVQLLSALLGLSVFILEEACLGAGSLPSV--SVDTARRKVVEAVELLSSASTTATHDDAXXXXXXXXXXXXXXXXXLLEGRRDNGCSGGAXXXXXXXXXXXXXXXXXXXXXXXISASLETAAEVS-------------RESSRDRSSLSPFRTALLAADGACVAVKRAETALSRAVSLQRSLPGKRDLVNDMVAACGDEEEKGGG---EVLVSARPHKEFLRDLLLAQGIQKTPGSELDELLASM 1674 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.59.44 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig80.59.44 >prot_P-littoralis_Contig80.59.44 ID=prot_P-littoralis_Contig80.59.44|Name=mRNA_P-littoralis_Contig80.59.44|organism=Pylaiella littoralis U1_48|type=polypeptide|length=2106bp MPPSRGSIGDELASRPEDDDDGGQWEDYTCQGSFEDLIRSLEIVLREWGAback to top mRNA from alignment at P-littoralis_Contig80:418634..449574+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig80.59.44 ID=mRNA_P-littoralis_Contig80.59.44|Name=mRNA_P-littoralis_Contig80.59.44|organism=Pylaiella littoralis U1_48|type=mRNA|length=30941bp|location=Sequence derived from alignment at P-littoralis_Contig80:418634..449574+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig80:418634..449574+ >mRNA_P-littoralis_Contig80.59.44 ID=mRNA_P-littoralis_Contig80.59.44|Name=mRNA_P-littoralis_Contig80.59.44|organism=Pylaiella littoralis U1_48|type=CDS|length=6318bp|location=Sequence derived from alignment at P-littoralis_Contig80:418634..449574+ (Pylaiella littoralis U1_48)back to top |