mRNA_P-littoralis_Contig80.44.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig80.44.1
Unique NamemRNA_P-littoralis_Contig80.44.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig80.44.1 vs. uniprot
Match: D8LFN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN0_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 6.540e-83
Identity = 177/397 (44.58%), Postives = 202/397 (50.88%), Query Frame = 1 
Query:    1 GPELRQGLELFRVVSRTGLQIRREIGLDSDPCGRLYAGDVFCVNHSATVPHHAPARRQGKQGKRRGRLLRVTRLHMVSPRIGWVTGSSKWVSKFQDGGDKPGPIPLRSTLSDTSPVLMVKPSMDHACSRRVPARSLGDCLAERCGDQNSETHAAHRRRQESTMPSYVNQEPRGTSTRTKWLHSRGGVWPVAVGSIPGPKYFPALPAEIGGHKSAEHGVGFPKEERFLSNATRYLSKDHERQARGLFSPGPAMYVGHDEVMPLAPRPPPPSSAPGPSRGCRHAPLVAASGGGEATRDEVPPRARTATTAGSLPGRGAGIRHRVPRDVATHTNGTQYMGLKEREAADRIVGKANAGTTGSPVMRLLLSGRGEREGPDGCFITRMGKASPGPARHHPNVS 1191
            GPELRQGL+LFRV++RTGLQIRR +GL+S+PCGRL+AGDVFCVN  + VPHH    ++ K+GK R   LR+TRLHMV P  GWVT SSKWV KFQ G  +PGPIPL+STL D  PV MVKPS   AC    P R                                     RG S       SR GVWPV V SIPGPKY P++      H SAE+GV FPKE RFLSN+TR       RQ                                                         P  + TA  AGS                        Y+GLKE+EAAD+IVGKANAGTTG PV+R L+S RGEREGPDGCF+TRMG  SPGP     N S
Sbjct:   22 GPELRQGLDLFRVINRTGLQIRRGVGLNSEPCGRLFAGDVFCVNRCSAVPHH----QENKRGKMR--QLRLTRLHMVQPYTGWVTWSSKWVEKFQGGDTRPGPIPLKSTLRDNCPVSMVKPS--DAC----PVR-------------------------------------RGAS-------SRDGVWPVDVKSIPGPKYLPSVSGANRDHSSAEYGVVFPKERRFLSNSTR-------RQ---------------------------------------------------------PVSSTTAAGAGS-----------------------PYIGLKEQEAADKIVGKANAGTTGCPVIRTLVSSRGEREGPDGCFVTRMGAESPGPTSGERNGS 275
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFN0_ECTSI6.540e-8344.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig80contigP-littoralis_Contig80:327603..331368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1515
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_001510.1
Cds size1515
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791647.8043976-CDS-P-littoralis_Contig80:327602..3281531680791647.8043976-CDS-P-littoralis_Contig80:327602..328153Pylaiella littoralis U1_48CDSP-littoralis_Contig80 327603..328153 +
1680791647.817052-CDS-P-littoralis_Contig80:328551..3286951680791647.817052-CDS-P-littoralis_Contig80:328551..328695Pylaiella littoralis U1_48CDSP-littoralis_Contig80 328552..328695 +
1680791647.8354642-CDS-P-littoralis_Contig80:329728..3299861680791647.8354642-CDS-P-littoralis_Contig80:329728..329986Pylaiella littoralis U1_48CDSP-littoralis_Contig80 329729..329986 +
1680791647.8465517-CDS-P-littoralis_Contig80:330593..3309141680791647.8465517-CDS-P-littoralis_Contig80:330593..330914Pylaiella littoralis U1_48CDSP-littoralis_Contig80 330594..330914 +
1680791647.8590555-CDS-P-littoralis_Contig80:331127..3313681680791647.8590555-CDS-P-littoralis_Contig80:331127..331368Pylaiella littoralis U1_48CDSP-littoralis_Contig80 331128..331368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig80.44.1prot_P-littoralis_Contig80.44.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig80 327603..331368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig80.44.1

>prot_P-littoralis_Contig80.44.1 ID=prot_P-littoralis_Contig80.44.1|Name=mRNA_P-littoralis_Contig80.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=505bp
GPELRQGLELFRVVSRTGLQIRREIGLDSDPCGRLYAGDVFCVNHSATVP
HHAPARRQGKQGKRRGRLLRVTRLHMVSPRIGWVTGSSKWVSKFQDGGDK
PGPIPLRSTLSDTSPVLMVKPSMDHACSRRVPARSLGDCLAERCGDQNSE
THAAHRRRQESTMPSYVNQEPRGTSTRTKWLHSRGGVWPVAVGSIPGPKY
FPALPAEIGGHKSAEHGVGFPKEERFLSNATRYLSKDHERQARGLFSPGP
AMYVGHDEVMPLAPRPPPPSSAPGPSRGCRHAPLVAASGGGEATRDEVPP
RARTATTAGSLPGRGAGIRHRVPRDVATHTNGTQYMGLKEREAADRIVGK
ANAGTTGSPVMRLLLSGRGEREGPDGCFITRMGKASPGPARHHPNVSSIS
SRGCPVFAAPTALDPADWERQRMASLAARPKTSQVHRRWPSHTHLRDEGR
ILGNLGMDSPGPGTINIANHDPFRAISFLKTDVCHPPPLSSLASHAFFAP
FRQV*
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mRNA from alignment at P-littoralis_Contig80:327603..331368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig80.44.1 ID=mRNA_P-littoralis_Contig80.44.1|Name=mRNA_P-littoralis_Contig80.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3766bp|location=Sequence derived from alignment at P-littoralis_Contig80:327603..331368+ (Pylaiella littoralis U1_48)
GGCCCAGAGCTCCGTCAAGGGCTTGAGCTGTTCCGGGTGGTCAGCCGTAC
CGGGCTGCAGATCCGCAGAGAGATCGGACTCGACTCGGACCCTTGCGGTC
GCCTCTACGCCGGAGACGTATTTTGCGTCAACCACTCCGCCACGGTACCT
CACCATGCTCCCGCTCGTCGTCAGGGGAAACAAGGAAAGCGACGGGGTCG
TCTGCTGCGGGTGACCCGATTGCACATGGTATCACCCCGGATAGGATGGG
TAACGGGGTCCTCAAAGTGGGTCTCCAAGTTTCAGGATGGCGGTGACAAG
CCGGGTCCGATACCATTGAGGTCGACTTTGAGCGATACCAGTCCGGTGCT
GATGGTGAAACCATCAATGGATCATGCGTGCAGCAGGCGGGTACCGGCGA
GATCTCTGGGAGACTGCCTTGCTGAGCGTTGCGGGGACCAAAATTCTGAG
ACGCATGCCGCGCATAGACGACGTCAAGAATCCACCATGCCTTCGTATGT
AAACCAAGAGCCAAGGGGAACTTCGACGAGGACCAAATGGCTTCACTCTA
GGTGTGACGTTGGTGGTGTATCTGCTGTGTCAGGTTGATCGGTATTGGTT
GGATTTTGGAGCCGCTGCAGGCGTCTGTCATGTCGACGTATCAGCCGGGG
CTGCAAGATCGGTCTAGAACTGTACATGGCCGGCGTTTCTTACCGTATGT
GCGCCATGGTCTATCCAAGAGTGACACAAAACTCGGCAGTAAAGAAAACA
CTAGGGTCTTAACAGCATGCATTCAAACAGACCACACTTGAAACCAAGTC
TTGCATACCTCGATGCAAGACACACAAAAAACAGTATCTTCCCCCGACAT
CGGCCAGCCTCTCAAAATCAAAGGACTAGATAATCCTCTCGATTGGGTCG
CCAGTATCGTACAACTCGTCTCACTTGTCCGTTTTCCTGAACTTTTCAGG
GGTGGGGTGTGGCCGGTGGCAGTGGGCAGCATTCCTGGGCCGAAGTATTT
TCCCGCGCTTCCAGCTGAAATAGGAGGCCACAAAAGCGCAGAACACGGCG
TCGGATTCCCAAAAGAGGAGCGATTTCTGAGTAATGCCACTAGGTGAGAA
TTGGGTTGGAGCCAACTATTTATCTGGACTATCGTAAGTTGGCGAAATTC
ATTTTCTGTACTGCAACAGCTGTGGTGTACGCATTCGTGGTATGTTACAG
ATCTTGTGCAAAAGGTTTTTGTACTTTTTTTTTTGTAGAATTTCCCTTCT
TATACCTATTTTTTGGAACGTAGCAGCCTGTGACGACGGAAAGTACCCTC
CTGCCGGGTTAGTCTTCAGCATGGACGTTAGAAGATCCTACTGAATGGAG
ATCGTACCGTTCTTTTGAGGTGAAGGCAACACAGACATTATCTGCACGGG
CCATCATTTTTAACCACCGCCGAATGAATGTATAAATTGGTTGTCGGCGT
GATGACAAGGCGACATGAGAATATTGTTTGGAGTACGTATGTGTGTGTTG
TCATCCCATTTATTCTGGGCACCAGTCTACACCTGTCGGTATGAAGTGTG
TGTATCAGCCGGGGTCACACAGCAGAAGGAAGGTCACATACGAGGTTTCG
TTTTTTTATTGCCCACACCTTCCTCCTGCGGTACGTGCCATTGAATTTTA
ATGCGAGTCGGGTTCAGCAATCCCTTCCCTCTGTTTACTCCCGAGTAATT
CGCTTTCCATTCTAAAGTCGCAAGAAACGCTCTCAGAGAGAACCGAACCT
ACGATGTTACAACTAGTAGGTTAACAATACATAAAGTAAACTTGAATATA
GGGTCATGGTACAGTACTTGGGATTGAGAATCTGTCACGGGAACACAATA
CCTACTTACCAAGTACTTGAAAAAACTTACCAACAATAAGAATAAGATTT
GAAAGCCGGTTGTTCTAGTCGGATAACATGCTTTCCTCGTGCTGCTACAT
AAATATTGGGAGACACGCTGCCCTTTTCTGCACACCGTCACACACGAACT
ACCTATATGGTCGAAATATTTTCAAGTCAGATGAGACACCTGTCTTCTCG
CGCTACCACAGCAAGCACCCGAGATAATCTGCCCTTTCTTTATCCTGAAC
ACCGCCACGCCCGCAACACGCCCCAGGTACCTCAGCAAGGACCACGAGAG
GCAGGCACGCGGCCTCTTTTCCCCAGGGCCAGCCATGTACGTAGGGCACG
ACGAGGTTATGCCATTGGCGCCGCGACCGCCGCCCCCGTCCTCGGCTCCT
GGACCGTCCCGCGGCTGTCGACACGCACCCCTTGTTGCAGCTAGCGGAGG
GGGGGAAGCAACACGCGACGAGGTTCCGCCGCGCGCTCGAACGGCGACTA
CAGCGGGTTCTCTCCCTGGGAGAGGCGCAGGAATGTGAGTCGCCTAGAGC
GACGTATGTTGCTCCGGGCTTGTTTCGTAGCGAAAGAGCTAGGTAGCCGC
CTAAAGATATTCTAAAGCACATTGAATCGGCGACAGCCCCCCCGCTTAAA
ACACCCAGCGAGACCATCAAGGTTTGCCGCAAAGGCGGAGGGTAGTCAAT
GGTGGGTTCTGTTGGTGCAATGGAGCGCAAGAAGAAGGTAATGCTGCCCA
CTTTCATGTTGAAGTATCATGAAATGACGAGAAGCACTGCGGTCAGGTTC
TTTCTCTGCTTTGGCTGGGCGCAAAAGCAGAAGACGAACGACTGATTTGT
TTCGTCCAGGTTGAAAAACGAACTGGCGTTGCTGTGCAAACTTGATCCGT
TATCTACGGTAGCTGGAAGTGCCCCGCTTTTGACATTGCCCCTTTGATAC
TACAGTAGCAGTGGTTTCTCCAGCGAACACCCGACCCCGTCGACTTCGTG
AGGCTCATTTCAATCTGAGGCGTAGACCGGTGCCCAAAATAAATGGGACG
AGTACACAAACACACACATACACACCATCCGAGCATCAACGCCGAAAAAA
TCACCCCAATCCGTCCTGCTCCAACCGACCAAACGTACCAGACGTCACAG
AGTACCGCGAGACGTCGCAACGCACACGAATGGAACTCAGTACATGGGGC
TCAAGGAGCGAGAAGCGGCCGATAGAATCGTTGGAAAGGCCAACGCAGGA
ACCACAGGTTCCCCCGTGATGCGGCTTCTCTTGTCCGGCAGGGGAGAGCG
AGAGGGGCCGGACGGGTGCTTCATCACGAGGATGGGGAAAGCGTCGCCCG
GGCCGGCCAGACATCACCCCAACGTTTCTTCCATCTCTTCGAGAGGTTGC
CCGGTGTTCGCCGCACCGACTGCTCTGGACCCCGCGGATTGGGAACGGCA
GAGGATGGCCTCGTTGGAGAAGCAGCAGCAGCAGCAGCCACAGCCTCAAA
CTCCCGCCACACTGCCGACGAAGAGCTCTGCACGGGCCGCCAACATGATC
ACCGAGCAGCCTCAAACTGCCCCGCTTCGGACACAGAGCTTACCACGCCC
CGAGATTGGCACTCAAGCTCAACAGCAACAACAACAACAACAACAACGAC
AACAACGTCGGCGGCTCATGAGAAGCTTGGCGGCGCGGCCCAAGACGTCC
CAAGTACACCGTCGGTGGCCCTCGCATACCCACTTGAGGGACGAGGGTCG
AATTTTGGGGAACCTGGGGATGGACAGCCCTGGCCCGGGCACGATCAACA
TTGCCAATCATGACCCTTTCAGAGCCATCTCGTTCCTGAAAACGGACGTG
TGTCACCCGCCTCCTCTCTCTTCTCTCGCCTCGCACGCGTTCTTTGCTCC
TTTTCGGCAGGTCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig80:327603..331368+

>mRNA_P-littoralis_Contig80.44.1 ID=mRNA_P-littoralis_Contig80.44.1|Name=mRNA_P-littoralis_Contig80.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1515bp|location=Sequence derived from alignment at P-littoralis_Contig80:327603..331368+ (Pylaiella littoralis U1_48)
GGCCCAGAGCTCCGTCAAGGGCTTGAGCTGTTCCGGGTGGTCAGCCGTAC
CGGGCTGCAGATCCGCAGAGAGATCGGACTCGACTCGGACCCTTGCGGTC
GCCTCTACGCCGGAGACGTATTTTGCGTCAACCACTCCGCCACGGTACCT
CACCATGCTCCCGCTCGTCGTCAGGGGAAACAAGGAAAGCGACGGGGTCG
TCTGCTGCGGGTGACCCGATTGCACATGGTATCACCCCGGATAGGATGGG
TAACGGGGTCCTCAAAGTGGGTCTCCAAGTTTCAGGATGGCGGTGACAAG
CCGGGTCCGATACCATTGAGGTCGACTTTGAGCGATACCAGTCCGGTGCT
GATGGTGAAACCATCAATGGATCATGCGTGCAGCAGGCGGGTACCGGCGA
GATCTCTGGGAGACTGCCTTGCTGAGCGTTGCGGGGACCAAAATTCTGAG
ACGCATGCCGCGCATAGACGACGTCAAGAATCCACCATGCCTTCGTATGT
AAACCAAGAGCCAAGGGGAACTTCGACGAGGACCAAATGGCTTCACTCTA
GGGGTGGGGTGTGGCCGGTGGCAGTGGGCAGCATTCCTGGGCCGAAGTAT
TTTCCCGCGCTTCCAGCTGAAATAGGAGGCCACAAAAGCGCAGAACACGG
CGTCGGATTCCCAAAAGAGGAGCGATTTCTGAGTAATGCCACTAGGTACC
TCAGCAAGGACCACGAGAGGCAGGCACGCGGCCTCTTTTCCCCAGGGCCA
GCCATGTACGTAGGGCACGACGAGGTTATGCCATTGGCGCCGCGACCGCC
GCCCCCGTCCTCGGCTCCTGGACCGTCCCGCGGCTGTCGACACGCACCCC
TTGTTGCAGCTAGCGGAGGGGGGGAAGCAACACGCGACGAGGTTCCGCCG
CGCGCTCGAACGGCGACTACAGCGGGTTCTCTCCCTGGGAGAGGCGCAGG
AATACGTCACAGAGTACCGCGAGACGTCGCAACGCACACGAATGGAACTC
AGTACATGGGGCTCAAGGAGCGAGAAGCGGCCGATAGAATCGTTGGAAAG
GCCAACGCAGGAACCACAGGTTCCCCCGTGATGCGGCTTCTCTTGTCCGG
CAGGGGAGAGCGAGAGGGGCCGGACGGGTGCTTCATCACGAGGATGGGGA
AAGCGTCGCCCGGGCCGGCCAGACATCACCCCAACGTTTCTTCCATCTCT
TCGAGAGGTTGCCCGGTGTTCGCCGCACCGACTGCTCTGGACCCCGCGGA
TTGGGAACGGCAGAGGATGGCCTCCTTGGCGGCGCGGCCCAAGACGTCCC
AAGTACACCGTCGGTGGCCCTCGCATACCCACTTGAGGGACGAGGGTCGA
ATTTTGGGGAACCTGGGGATGGACAGCCCTGGCCCGGGCACGATCAACAT
TGCCAATCATGACCCTTTCAGAGCCATCTCGTTCCTGAAAACGGACGTGT
GTCACCCGCCTCCTCTCTCTTCTCTCGCCTCGCACGCGTTCTTTGCTCCT
TTTCGGCAGGTCTGA
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