mRNA_P-littoralis_Contig80.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig80.37.1
Unique NamemRNA_P-littoralis_Contig80.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig80.37.1 vs. uniprot
Match: A0A6H5K4L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4L5_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 9.400e-45
Identity = 75/87 (86.21%), Postives = 83/87 (95.40%), Query Frame = 2 
Query:   62 MRNVFSSVRQRNIAVGIAVCGFAAATAAIPFVVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDQDWSKDTREWTGRRNKPE 322
            MRN FSSVRQRN+AVG+A+CGF+AA A++PFVVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRD DWSK+TREW GRRNKP+
Sbjct:    1 MRNYFSSVRQRNLAVGVAICGFSAAMASLPFVVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDHDWSKETREWAGRRNKPD 87
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BLAST of mRNA_P-littoralis_Contig80.37.1 vs. uniprot
Match: W7UAH4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAH4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.870e-10
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 2 
Query:   80 SVRQRN-IAVGIAVCGFAAATAAIPFVVRK-RMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDQDWSKDTREWTGRRNKP 319
            S R RN I V +   G   A A +P+ +RK R  +SLY S++ LTGSQI RGA+MNS S+D+G D D+   + EW GRRN P
Sbjct:   21 STRNRNRITVVLVTLGITMA-ALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRRNDP 101
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BLAST of mRNA_P-littoralis_Contig80.37.1 vs. uniprot
Match: A0A7S1XNK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNK1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.490e-8
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 2 
Query:   92 RNIAVGIAVCGFAAATAAIPFVVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDQDW 277
            RN A  + + G  A  AA+PF+  K  T++L + ++ LTG+Q+QRG FMNSGSKDVGRD +W
Sbjct:   46 RNTATLVVLLGGCAVMAAVPFLSMKT-TENLMNRDKALTGTQVQRGPFMNSGSKDVGRDPNW 106
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BLAST of mRNA_P-littoralis_Contig80.37.1 vs. uniprot
Match: A0A5A8E2E3_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E2E3_CAFRO)

HSP 1 Score: 55.8 bits (133), Expect = 2.350e-6
Identity = 33/67 (49.25%), Postives = 39/67 (58.21%), Query Frame = 2 
Query:   77 SSVRQRNIAVGIAVCGFAAATAAIPFVVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDQDW 277
            SS R       +     A   A+IPF+  K   + L D E  LTG+QIQRGAF+NSGSKDVG D DW
Sbjct:    5 SSKRAGKTVAAVGALLVAGGFASIPFLFTKSQVR-LTDKEGSLTGTQIQRGAFLNSGSKDVGVDPDW 70
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BLAST of mRNA_P-littoralis_Contig80.37.1 vs. uniprot
Match: A0A1V9YCV8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCV8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.690e-6
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 2 
Query:   89 QRNIAVGIAVCGFAAATAAIPF-VVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDQDWSKDTREWTGRR 310
            +  +AVG+AV      + ++PF +V+ +  ++    E  L+ SQI+RG +MN+GSKD+GRD DW   T  + GRR
Sbjct:    3 RNKLAVGLAVGAGGLLSFSLPFWIVQSKKDQNTMSMEGPLSTSQIRRGVYMNTGSKDIGRDPDWDLTTNTYKGRR 77
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BLAST of mRNA_P-littoralis_Contig80.37.1 vs. uniprot
Match: F0WCJ2_9STRA (Uncharacterized protein AlNc14C59G4372 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCJ2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.990e-6
Identity = 28/85 (32.94%), Postives = 48/85 (56.47%), Query Frame = 2 
Query:   71 VFSSVRQRNIAVGIAVCGFAAATAAIPFVVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDQDWSKDTREWTGRRNKPEG 325
            VF    + ++ V +     A A  ++P++     T++   +E+ L+ SQ++RGA++N+GSKD+G D D+   TR W G R    G
Sbjct:    2 VFQRKARGDVVVAVLALITAGAFFSVPYLSHYLKTENYQTTEKALSSSQVRRGAYLNTGSKDIGPDPDYDAKTRTWNGGRASDRG 86
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BLAST of mRNA_P-littoralis_Contig80.37.1 vs. uniprot
Match: K3XCC5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XCC5_GLOUD)

HSP 1 Score: 53.9 bits (128), Expect = 9.720e-6
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 2 
Query:  146 IPFVVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDQDWSKDTREWTGRR 310
            IPF+     T++L   E+ L  SQI+RG ++N+GSKD G D DW   T  W GRR
Sbjct:   35 IPFLAHFTKTENLTRKEDALNASQIRRGVYLNTGSKDAGVDPDWDFRTNTWRGRR 89
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BLAST of mRNA_P-littoralis_Contig80.37.1 vs. uniprot
Match: A0A2R5GU17_9STRA (Protein N-lysine methyltransferase METTL21A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU17_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.540e-5
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 2 
Query:   89 QRNIAVGIAVCGFAAATAAIPFVVRKRMTKS---LYDSEEGLTGSQIQRGAFMNSGSKDVGRDQDWSKDTREWTGRR 310
            +RN+A    + GF    A++P     ++ ++   L   E  LTG+Q+ RGA++N+GS+D G D DW  + R W GRR
Sbjct:    4 RRNLATAAGLVGFIGLCASVPMWYSNKLKQAQVNLQQQENALTGNQVIRGAYLNTGSRDAGVDPDWDFERRVWRGRR 80
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BLAST of mRNA_P-littoralis_Contig80.37.1 vs. uniprot
Match: A0A662Y583_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y583_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.120e-5
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 2 
Query:  131 AATAAIPFVVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDQDWSKDTREWTGRR 310
            AA  +IPF+      ++    E+ L  SQI+RGA++NSGS+D G D DW   T  W GRR
Sbjct:   20 AAFFSIPFIAHYTKQENFTSKEQPLNASQIRRGAYLNSGSRDAGVDPDWDFRTGTWHGRR 79
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BLAST of mRNA_P-littoralis_Contig80.37.1 vs. uniprot
Match: W2N542_PHYPR (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2N542_PHYPR)

HSP 1 Score: 52.0 bits (123), Expect = 3.650e-5
Identity = 32/71 (45.07%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  116 VCGFAAATAA----IPFVVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDQDWSKDTREWTGRRNK 316
            V GFA   AA    IPFV       +L   E+ L  SQI+RGA+ NSGS+D G D DW   T  + GRR +
Sbjct:   21 VLGFALVVAAGFFSIPFVAHYTKGANLTAQEKPLNASQIRRGAYANSGSRDAGADPDWDMSTGTYHGRRGR 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5K4L5_9PHAE9.400e-4586.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7UAH4_9STRA8.870e-1050.00Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1XNK1_9STRA3.490e-851.61Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5A8E2E3_CAFRO2.350e-649.25Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A1V9YCV8_9STRA2.690e-640.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
F0WCJ2_9STRA3.990e-632.94Uncharacterized protein AlNc14C59G4372 n=1 Tax=Alb... [more]
K3XCC5_GLOUD9.720e-647.27Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2R5GU17_9STRA1.540e-537.66Protein N-lysine methyltransferase METTL21A n=1 Ta... [more]
A0A662Y583_9STRA3.120e-545.00Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
W2N542_PHYPR3.650e-545.07Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig80contigP-littoralis_Contig80:314756..316992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000025871
Model size811
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal peptide
Exons2
Evalue3.77e-08
EggNOG OGs2E2XB@1|root,2SA3B@2759|Eukaryota,1MI0N@121069|Pythiales
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_001530.1
Descriptionfunction. Source PGD
Cds size267
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791647.5052335-UTR-P-littoralis_Contig80:314755..3148161680791647.5052335-UTR-P-littoralis_Contig80:314755..314816Pylaiella littoralis U1_48UTRP-littoralis_Contig80 314756..314816 +
1680791647.5452318-UTR-P-littoralis_Contig80:316509..3169921680791647.5452318-UTR-P-littoralis_Contig80:316509..316992Pylaiella littoralis U1_48UTRP-littoralis_Contig80 316510..316992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791647.5160642-CDS-P-littoralis_Contig80:314816..3149291680791647.5160642-CDS-P-littoralis_Contig80:314816..314929Pylaiella littoralis U1_48CDSP-littoralis_Contig80 314817..314929 +
1680791647.5332465-CDS-P-littoralis_Contig80:316355..3165091680791647.5332465-CDS-P-littoralis_Contig80:316355..316509Pylaiella littoralis U1_48CDSP-littoralis_Contig80 316356..316509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig80.37.1prot_P-littoralis_Contig80.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig80 314817..316509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig80.37.1

>prot_P-littoralis_Contig80.37.1 ID=prot_P-littoralis_Contig80.37.1|Name=mRNA_P-littoralis_Contig80.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
MRNVFSSVRQRNIAVGIAVCGFAAATAAIPFVVRKRMTKSLYDSEEGLTG
SQIQRGAFMNSGSKDVGRDQDWSKDTREWTGRRNKPEG*
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mRNA from alignment at P-littoralis_Contig80:314756..316992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig80.37.1 ID=mRNA_P-littoralis_Contig80.37.1|Name=mRNA_P-littoralis_Contig80.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2237bp|location=Sequence derived from alignment at P-littoralis_Contig80:314756..316992+ (Pylaiella littoralis U1_48)
TCTCACACGCGCACACAGCTCGGACACAGGCATCCCTGCTTGCCTTTTCG
TTGCTGCTGCCATGAGGAACGTCTTTTCCAGCGTGCGGCAGAGAAATATT
GCTGTCGGGATCGCTGTGTGTGGCTTCGCGGCCGCCACGGCAGCAATACC
GTTCGTGGTTCGAAAGAGGATGACGTGAGTATCATTTACTGCACAGCGGT
ACTGCTGTCCTTCTGTGTGCACTGCTGTACACACTAGCTCGTACACACAC
CGGTTGGAGCGTCTACCTATCCGAAAGGAGTAGAGTGGCGTCCAATTAAA
GGGATGACAACACACACGTATCACATCGTACAATACCGCACCCTTCGACC
GATTTTCGATTTTCAAAGCCTGGTCATTCCGCATCAGAAACATCATCGGC
GTTGTATGCTGTATCGGAAAGGGGGGCGCTGGAACCATATCGTGGAGAGC
CCCTCCCTAAGGTACACAGATGGACAAATGTCCCCACTGACCAAGGTGCC
TGACCCCGAATGACCTTGTGCACACCTTGTCAAGGTGTTGACCTCTAGAA
ATCGATCAAAATCGCCGACAAAATCGACACAAAGTCATTCGGGGTCAGGC
ACCTTGGTCAGCGGGGGCAAATCGATCAAAATCACCGACAAGGTCTACAC
AAAGTCATTCGGGGTCAGGCACATTGGTCAGCGGGGGCATTTGTCCACGT
GTGTGCCATCTTGTGACTGCAATTGGTTTTACAGCAGCGCCCTCTTCGTT
TTTGCGGATTCGAGCTTCGAACTTCGATTCAGGGTTCAGCGGCTGTGGCA
TCCTAAAGACCTTGTTGTTGTTGTTGCTGCTGCTGCTGTTGCTGCTGCTG
TATTGTGCTCCTGCAATGACCTTGTTGTTGTTGCTGCCGTTGTTGCTGCT
GTGTTGTTGCTGCTGAAAAACCTTGTTGTTGTTGTACCTGGTAGCTGTTG
TCTTCACGATTAAAACCGTTCCGACCTGTGTCCCCAGTACCTTCCGTACC
CCGCAAGCTCCACGTTCCAACTGGTGCCGGATGTGTGGGGGAATATAATA
CGCTCGGATTGCAGGCAGTTCTTTGAATCTCATCCACTCTAAGTACTTGT
ACAACCTACGTGTTGCGTACTATCCATAGCAGCAGTGCTTGGAGAAGAGC
CAGTGTTAGTTGAGTCACTCTGTTGCAGGGGAAGGATATCGAGTGGTACG
GCCCTAGCCCAGTTTCCAGTATGTCCTTTGTGACCACCGCTAAATTCCGC
AGCAAAAGTAGAAACGCTACGACCAGAAGCAACGTTGTGATTTCAACTTC
GAGGGGACACAGTTTCCAACGTTATACTGAAGTTGGTGTGGGAAACGTTG
TTTCCAAGGTTGTACTTCATATCCTGAAGCTAGTGAAGGACGCACGTCTT
TGTGAGCCTGGTGTTTCGATACCGTAGCGTTTGTTGCAATGTGTCCTGCG
CCATACCTGCCACGCCACGCCGCCCTGAGCCTACTACTGTAACCCCTCCC
CACCTGAATTCCACCGACATTGGTGTCGTTCTCTCCCCCAATGGGTCGGT
ACCTATGATGTGTGTTGTCTTTTTGTTCCCCCGCCTGCCTCATGGAGCAG
GAAGTCGTTGTACGACAGCGAGGAGGGGCTGACGGGCTCGCAGATACAGC
GCGGGGCCTTCATGAATTCGGGAAGCAAAGACGTCGGGCGAGATCAGGAC
TGGTCTAAGGACACGAGAGAGTGGACCGGCAGGCGAAACAAGCCGGAGGG
TTGAAAAGCATGGCACACAAGGACGGCATCCATCCGTAGTGCCGCAATAA
GCAGTCGTGGTTGAGGTCACAGAGAGCTCGACTTTTAACAATAAAAATCA
CTTCGTACATATTTGTCGGTATAAGAGAGGTCGAAATAGCTTTAGCTTGA
AACGTTCAGAGGAGCATTTGCTTTTTTTGTGTTTGAGAGAGGTTTGTGGC
ATGGCACATCCCGTTCTCTAAACGCAATCGTCACTACCGTGGCCGGGTTT
AGGCTTGTCACGAAAGTAGGAAATACTTAAAGGTAAATGTTATTGGGTGC
GTTTTTGGTGTGAGAAAGCATGCGCGAGACTGCCTTTCCGTCCGAATGTT
CAATATTCAGGGAAAGCAGGGGTGCAGCACCCCTCCTGATTTCGGTTCGA
CATGGGCGAATTAATGCGATGGGACAAAACACGCCATTAAGGCAGAACGT
AACCGTGTCCTTGGCAGTCAGAGAAGCTATACTGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig80:314756..316992+

>mRNA_P-littoralis_Contig80.37.1 ID=mRNA_P-littoralis_Contig80.37.1|Name=mRNA_P-littoralis_Contig80.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig80:314756..316992+ (Pylaiella littoralis U1_48)
ATGAGGAACGTCTTTTCCAGCGTGCGGCAGAGAAATATTGCTGTCGGGAT
CGCTGTGTGTGGCTTCGCGGCCGCCACGGCAGCAATACCGTTCGTGGTTC
GAAAGAGGATGACGAAGTCGTTGTACGACAGCGAGGAGGGGCTGACGGGC
TCGCAGATACAGCGCGGGGCCTTCATGAATTCGGGAAGCAAAGACGTCGG
GCGAGATCAGGACTGGTCTAAGGACACGAGAGAGTGGACCGGCAGGCGAA
ACAAGCCGGAGGGTTGA
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