mRNA_P-littoralis_Contig12.37.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A6H5JU59_9PHAE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU59_9PHAE) HSP 1 Score: 292 bits (747), Expect = 1.050e-93 Identity = 164/232 (70.69%), Postives = 183/232 (78.88%), Query Frame = 1
Query: 1 MATDEAKVVDAVPPPPAYYKLFSPDAAL-GVHQPATGAAAGXXXXAG-----SPNVFPLEPPRPPGPGETYTMFGMPYSSEPVTEELLPPEKMVVPPTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQNDAVTSALEAAMLQCASARQGAAACLGLVPSGASDTKE------DSGGVPMDVVDDLGG 660
MAT+EAKVVDAVPPPPAYYKLFSP A+L G A+ A A AG +PN FPL+PPRPPGPGETY MFGMPYSSEPV +ELLPPEK+VVP +G+AIDFRA LK LLNSIMANYGQFMEMLVSSP+RAHEKLSDVETLFVNFHSLLNRYRAHQARH++LERLR QAE+NDAV S LEAAM QC SA++ A +CLGL GAS E G V MD+ + +GG
Sbjct: 1 MATEEAKVVDAVPPPPAYYKLFSPGASLTGQDVGASAAIAAPGDSAGGAGGTAPNEFPLQPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAGLKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAEENDAVMSTLEAAMHQCTSAQESAFSCLGLQEHGASCVAEGERERAQQGRVEMDIDETIGG 232
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: D8LAU4_ECTSI (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU4_ECTSI) HSP 1 Score: 223 bits (569), Expect = 3.350e-68 Identity = 131/204 (64.22%), Postives = 146/204 (71.57%), Query Frame = 1
Query: 199 MFGMPYSSEPVTEELLPPEKMVVPPTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQNDAVTSALEAAMLQCASARQGAAACLGLVPSGASDTKEDSGG------VPMDVVDDLGGXXXXXXXXXXXXXXXXXXXXXXXXXKGKLRAVEPAGVDESGR*R 792
MFGMPYSSEPV +ELLPPEK+VVP +G+AIDFRAELK LLNSIMANYGQFMEMLVSSP+RAHEKLSDVETLFVNFHSLLNRYRAHQARH++LERLR QA++NDAV SALEAAM QC SA++GA +CLGL +GAS E G V MDV + +GG KGKL AV V ESG R
Sbjct: 1 MFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAKENDAVMSALEAAMHQCTSAQEGAFSCLGLQENGASGVAEGEGERARQGRVEMDVDETIGGAATTAVGEGGVAGEGVAASEFGKAGKGKLGAVLAPAV-ESGNPR 203
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A6U1QAX8_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QAX8_9STRA) HSP 1 Score: 109 bits (272), Expect = 7.840e-25 Identity = 67/177 (37.85%), Postives = 100/177 (56.50%), Query Frame = 1
Query: 10 DEAKVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGXXXXAGSPNVFPLEPPRPPGPGETYTMFGMPYSSEPVTEELLPPEKMVVPPTGEAI-DFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQNDAVTSALEAAM 537
DE +VV A+P PP Y+K F + F L+ RPP P +Y FG+PYS+E L+P EK + P + +FR+E+++LL SIMANY Q +++L+ PS+ K+ ++E LFVNFHS+LN++R HQAR ++L RL+ Q + + LE+ M
Sbjct: 3 DELQVVSALPAPPDYFKRFEDE------------------------NFQLK--RPPVPEGSYASFGIPYSAEAFIPTLVPDEKKLGPKQDDLDRNFRSEMQKLLQSIMANYVQLLDILIECPSQQSRKVEELEQLFVNFHSILNQFRQHQAREMVLVRLKRQKKDEQKALAMLESQM 153
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: F0WF41_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WF41_9STRA) HSP 1 Score: 103 bits (256), Expect = 1.190e-21 Identity = 63/183 (34.43%), Postives = 102/183 (55.74%), Query Frame = 1
Query: 19 KVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGXXXXAGSPNVFPLEPPRPPGPGETYTMFGMPYSSEPVTEELLPPEKMVV--------PPTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQNDAVTSALEAAMLQ 543
++V PPPPA++ L+ D V+ PA PP P P Y MFG PYS++ V +LLP + + P +AID++A+LK+L S++AN Q +++L+ +P +EK+ D+E LFVN H+L+N++R HQAR +I++ LRGQ E+ A + + +++
Sbjct: 11 EIVSEFPPPPAFFSLYQID---DVNAPA--------------------PPAPMAPN--YHMFGTPYSTKDVVPDLLPDDSKKLYLSDTSAQDPAPQAIDYKAQLKKLNRSLLANCIQLLDVLIRNPKVFNEKVDDLELLFVNMHNLINKFRPHQAREMIIQLLRGQIEEKQAAINDIRRVLIE 168
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A329SFW2_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SFW2_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 5.780e-19 Identity = 50/119 (42.02%), Postives = 80/119 (67.23%), Query Frame = 1
Query: 166 PRPPGPGE-TYTMFGMPYSSEPVTEELLP-PEKMVVPPTGE-----AIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQ 501
P PP P E TY MFG PYS++ V +LLP P K + P GE +D++AE+K++ S++AN+ + +++L+ P+ +EKL DVE LF+N H+L+N +R HQAR +++ L+ Q ++
Sbjct: 34 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPGKKLYAPQGEDGGGAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 152
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A024GGG9_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GGG9_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 1.410e-18 Identity = 59/176 (33.52%), Postives = 95/176 (53.98%), Query Frame = 1
Query: 19 KVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGXXXXAGSPNVFPLEPPRPPGP-GETYTMFGMPYSSEPVTEELLPPE--KMVVP------PTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQNDAVTS 519
++V PPPPA++ L+ V + P PP P Y MFG PYS++ + +LLP + K+ +P P ++ID++A+LK+L S++AN Q +++L+ +P +EK+ D+E LFVN H+L+N++R HQAR I+ L+ Q E+ A S
Sbjct: 34 EIVSEFPPPPAFFSLYQ--------------------------VNNADAPLPPAPMAPNYHMFGTPYSTKDIVPDLLPDDSKKLYLPTLSTQDPKEQSIDYKAQLKKLNRSLLANCIQLLDVLIRNPKLFNEKVDDLELLFVNMHNLINKFRPHQAREHIILMLQSQIEEKQAAIS 183
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: H3GJZ4_PHYRM (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJZ4_PHYRM) HSP 1 Score: 97.1 bits (240), Expect = 1.420e-18 Identity = 57/170 (33.53%), Postives = 94/170 (55.29%), Query Frame = 1
Query: 10 DEAKVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGXXXXAGSPNVFPLEPPRPPGPGE-TYTMFGMPYSSEPVTEELLPPEKMVVPPTGEA-----IDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQ 501
D ++V P PP ++ L+ A G +G P PP P E TY MFG PYS++ V +LLP +K+ P E +D++AE+K++ S++AN+ + +++L+ P+ +EKL DVE LF+N H+L+N +R HQAR +++ L+ Q ++
Sbjct: 148 DTPEIVSEFPAPPKFFALY-----------ADGVESG---------------PAPPEPMEPTYHMFGSPYSTQDVVPDLLPGKKLYAPAGEEGDEDAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINSFRPHQARETVIQMLKTQVQE 291
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A8K1CA38_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA38_PYTOL) HSP 1 Score: 94.0 bits (232), Expect = 2.710e-18 Identity = 59/170 (34.71%), Postives = 95/170 (55.88%), Query Frame = 1
Query: 10 DEAKVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGXXXXAGSPNVFPLEPPRPPGPGETYTMFGMPYSSEPVTEELLP-PEKMV-------VP-PTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQ 492
D ++V A P PPA++ L++ G P T +EP TY MFG PYS++ V +LLP P K + VP + E ID++A++K++ +S++AN+ + +++L+ PS +EKL+D+E LF+N H+L+N +R HQAR I+ L+ Q
Sbjct: 17 DAPEIVSAFPAPPAFFVLYADGVESGPPPPET-----------------MEP--------TYHMFGTPYSTKDVVPDLLPQPGKKLYLDGKDSVPGESSEVIDYKAQMKKINHSLLANFTELVDVLIKKPSLFNEKLADLELLFLNMHNLINAFRPHQARETIIHMLKTQ 161
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A2P4YE96_9STRA (Mediator of RNA polymerase II transcription subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YE96_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.670e-17 Identity = 57/169 (33.73%), Postives = 97/169 (57.40%), Query Frame = 1
Query: 4 ATDEA-KVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGXXXXAGSPNVFPLEPPRPPGPGE-TYTMFGMPYSSEPVTEELLP-PEKMVVPPTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQ 501
A +EA ++V P PP ++ L+ A G +G P PP P E TY MFG PYS++ V +LLP P++ + + +D++AE+K++ S++AN+ + +++L+ P+ +EKL DVE LF+N H+L+N +R HQAR +++ L+ Q ++
Sbjct: 556 AEEEAPEIVSEFPAPPKFFALY-----------ADGVESG---------------PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPDRKLYAQGDDPVDYKAEMKKINRSLLANFVELVDILIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 698
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A225WFP8_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WFP8_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.590e-16 Identity = 41/104 (39.42%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 193 YTMFGMPYSSEPVTEELLP-PEKMVVPPTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQ 501
Y MFG PYS++ V +LLP EK + E + ++AE+K++ S++AN+ + +++LV P+ + KL DVE LF+N H+L+N +R HQAR +++ L+ Q ++
Sbjct: 5 YHMFGSPYSTQDVVPDLLPHAEKKLYAKNDETVHYKAEMKKINRSLLANFVELVDVLVKKPAMFNAKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 108 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig12.37.2 >prot_P-littoralis_Contig12.37.2 ID=prot_P-littoralis_Contig12.37.2|Name=mRNA_P-littoralis_Contig12.37.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=263bp MATDEAKVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGAAAGAGSPNVback to top mRNA from alignment at P-littoralis_Contig12:182882..186434+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig12.37.2 ID=mRNA_P-littoralis_Contig12.37.2|Name=mRNA_P-littoralis_Contig12.37.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3553bp|location=Sequence derived from alignment at P-littoralis_Contig12:182882..186434+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig12:182882..186434+ >mRNA_P-littoralis_Contig12.37.2 ID=mRNA_P-littoralis_Contig12.37.2|Name=mRNA_P-littoralis_Contig12.37.2|organism=Pylaiella littoralis U1_48|type=CDS|length=789bp|location=Sequence derived from alignment at P-littoralis_Contig12:182882..186434+ (Pylaiella littoralis U1_48)back to top |