mRNA_P-littoralis_Contig80.65.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig80.65.1
Unique NamemRNA_P-littoralis_Contig80.65.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig80contigP-littoralis_Contig80:449025..449562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size538
Hectar predicted targeting categorysignal peptide
Exons1
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791645.825724-UTR-P-littoralis_Contig80:449024..4490961680791645.825724-UTR-P-littoralis_Contig80:449024..449096Pylaiella littoralis U1_48UTRP-littoralis_Contig80 449025..449096 +
1680791645.8572726-UTR-P-littoralis_Contig80:449549..4495621680791645.8572726-UTR-P-littoralis_Contig80:449549..449562Pylaiella littoralis U1_48UTRP-littoralis_Contig80 449550..449562 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791645.8454835-CDS-P-littoralis_Contig80:449096..4495491680791645.8454835-CDS-P-littoralis_Contig80:449096..449549Pylaiella littoralis U1_48CDSP-littoralis_Contig80 449097..449549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig80.65.1prot_P-littoralis_Contig80.65.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig80 449097..449549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig80.65.1

>prot_P-littoralis_Contig80.65.1 ID=prot_P-littoralis_Contig80.65.1|Name=mRNA_P-littoralis_Contig80.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=151bp
MSSHWCHHMYTDVLVCVCVCACVCVSSRLFWAAVYNVRYGVGAPGGVTQW
EVHRSLNKIKCVQQNNMLIFLFRLDYPSTHLLQCFSFANQLFIARSVQSV
PLPSSTLRSNNHVFWWNRRYSEYIFPLFLGKKRENSPGWGINIFIGNRST
*
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mRNA from alignment at P-littoralis_Contig80:449025..449562+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig80.65.1 ID=mRNA_P-littoralis_Contig80.65.1|Name=mRNA_P-littoralis_Contig80.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=538bp|location=Sequence derived from alignment at P-littoralis_Contig80:449025..449562+ (Pylaiella littoralis U1_48)
TGGAGATGCTGCCCTCTATGTACGTAGATAACTTTCCCCCCTCCACGTTG
AATCAGAGATGATAATAGATGTATGTCATCACACTGGTGTCATCACATGT
ACACGGACGTGCTTGTGTGTGTGTGTGTGTGTGCTTGCGTGTGTGTGTCA
TCCCGTTTATTCTGGGCAGCAGTCTACAACGTTCGGTATGGAGTGGGTGC
ACCAGGCGGGGTAACACAGTGGGAAGTTCACAGGAGTTTGAATAAAATTA
AGTGTGTACAGCAGAATAATATGCTTATTTTTTTGTTTCGTTTAGACTAT
CCCTCCACCCACCTTCTTCAGTGCTTTTCTTTTGCCAATCAGCTCTTTAT
CGCGAGAAGCGTTCAAAGTGTCCCTTTACCCTCGTCAACTCTTCGGTCGA
ATAATCATGTGTTTTGGTGGAATCGGAGATACTCGGAGTATATTTTTCCG
TTGTTTTTAGGAAAGAAGCGAGAAAACTCGCCCGGCTGGGGAATAAATAT
TTTCATCGGAAACAGGTCAACGTAACCCAACGAGTAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig80:449025..449562+

>mRNA_P-littoralis_Contig80.65.1 ID=mRNA_P-littoralis_Contig80.65.1|Name=mRNA_P-littoralis_Contig80.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig80:449025..449562+ (Pylaiella littoralis U1_48)
ATGTCATCACACTGGTGTCATCACATGTACACGGACGTGCTTGTGTGTGT
GTGTGTGTGTGCTTGCGTGTGTGTGTCATCCCGTTTATTCTGGGCAGCAG
TCTACAACGTTCGGTATGGAGTGGGTGCACCAGGCGGGGTAACACAGTGG
GAAGTTCACAGGAGTTTGAATAAAATTAAGTGTGTACAGCAGAATAATAT
GCTTATTTTTTTGTTTCGTTTAGACTATCCCTCCACCCACCTTCTTCAGT
GCTTTTCTTTTGCCAATCAGCTCTTTATCGCGAGAAGCGTTCAAAGTGTC
CCTTTACCCTCGTCAACTCTTCGGTCGAATAATCATGTGTTTTGGTGGAA
TCGGAGATACTCGGAGTATATTTTTCCGTTGTTTTTAGGAAAGAAGCGAG
AAAACTCGCCCGGCTGGGGAATAAATATTTTCATCGGAAACAGGTCAACG
TAA
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