mRNA_P-littoralis_Contig80.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig80.35.1
Unique NamemRNA_P-littoralis_Contig80.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig80contigP-littoralis_Contig80:276379..276803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size426
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791645.7361434-CDS-P-littoralis_Contig80:276378..2766961680791645.7361434-CDS-P-littoralis_Contig80:276378..276696Pylaiella littoralis U1_48CDSP-littoralis_Contig80 276379..276696 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791645.7536457-UTR-P-littoralis_Contig80:276696..2768031680791645.7536457-UTR-P-littoralis_Contig80:276696..276803Pylaiella littoralis U1_48UTRP-littoralis_Contig80 276697..276803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig80.35.1prot_P-littoralis_Contig80.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig80 276379..276696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig80.35.1

>prot_P-littoralis_Contig80.35.1 ID=prot_P-littoralis_Contig80.35.1|Name=mRNA_P-littoralis_Contig80.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
MFCLECGKDKALQCFTQDMLVNQCGYLQCTTCVDSGAPKPWVSSTRPCLS
CDQLKHKNMFSQKQLKSASGSTCLQCMGKATCGTCLQQRPLESFSRSQLG
RGQSRR
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mRNA from alignment at P-littoralis_Contig80:276379..276803-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig80.35.1 ID=mRNA_P-littoralis_Contig80.35.1|Name=mRNA_P-littoralis_Contig80.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=425bp|location=Sequence derived from alignment at P-littoralis_Contig80:276379..276803- (Pylaiella littoralis U1_48)
TGTGACCAGGTGAGCAGGTGTACATGATTGCACGTGACTGAGACGTAGCA
ACACCACAGCGGGAGGCGCAAAAAAGAAGCAGCACCACACCCTACCTATC
TGCCCCCATGTTCTGCCTCGAATGCGGCAAAGACAAGGCCTTGCAGTGCT
TCACCCAGGACATGCTGGTCAACCAGTGCGGGTATCTGCAGTGCACGACG
TGTGTCGACAGCGGGGCGCCGAAGCCGTGGGTGTCCAGCACGCGGCCTTG
CCTGTCGTGCGACCAGCTGAAGCACAAGAACATGTTCTCGCAGAAGCAGC
TCAAGAGCGCCAGCGGCAGCACGTGCCTGCAGTGCATGGGGAAGGCCACC
TGCGGCACGTGCCTGCAGCAGCGGCCGCTGGAGAGCTTCTCCCGCTCGCA
GCTGGGGCGGGGGCAGAGCCGACGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig80:276379..276803-

>mRNA_P-littoralis_Contig80.35.1 ID=mRNA_P-littoralis_Contig80.35.1|Name=mRNA_P-littoralis_Contig80.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig80:276379..276803- (Pylaiella littoralis U1_48)
ATGTTCTGCCTCGAATGCGGCAAAGACAAGGCCTTGCAGTGCTTCACCCA
GGACATGCTGGTCAACCAGTGCGGGTATCTGCAGTGCACGACGTGTGTCG
ACAGCGGGGCGCCGAAGCCGTGGGTGTCCAGCACGCGGCCTTGCCTGTCG
TGCGACCAGCTGAAGCACAAGAACATGTTCTCGCAGAAGCAGCTCAAGAG
CGCCAGCGGCAGCACGTGCCTGCAGTGCATGGGGAAGGCCACCTGCGGCA
CGTGCCTGCAGCAGCGGCCGCTGGAGAGCTTCTCCCGCTCGCAGCTGGGG
CGGGGGCAGAGCCGACGG
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