mRNA_P-littoralis_Contig80.54.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig80.54.1
Unique NamemRNA_P-littoralis_Contig80.54.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig80contigP-littoralis_Contig80:380103..380636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size329
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791645.4922037-UTR-P-littoralis_Contig80:380102..3801671680791645.4922037-UTR-P-littoralis_Contig80:380102..380167Pylaiella littoralis U1_48UTRP-littoralis_Contig80 380103..380167 +
1680791645.5478377-UTR-P-littoralis_Contig80:380576..3806361680791645.5478377-UTR-P-littoralis_Contig80:380576..380636Pylaiella littoralis U1_48UTRP-littoralis_Contig80 380577..380636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791645.5106263-CDS-P-littoralis_Contig80:380167..3803111680791645.5106263-CDS-P-littoralis_Contig80:380167..380311Pylaiella littoralis U1_48CDSP-littoralis_Contig80 380168..380311 +
1680791645.5261555-CDS-P-littoralis_Contig80:380516..3805761680791645.5261555-CDS-P-littoralis_Contig80:380516..380576Pylaiella littoralis U1_48CDSP-littoralis_Contig80 380517..380576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig80.54.1prot_P-littoralis_Contig80.54.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig80 380168..380576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig80.54.1

>prot_P-littoralis_Contig80.54.1 ID=prot_P-littoralis_Contig80.54.1|Name=mRNA_P-littoralis_Contig80.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
MCGKITRPKYDEGKDTPTSVHVKTVEGNTSKAWGMKPSEIRMPPPLDYEI
QSTMDEYTNQAHRPGGW*
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mRNA from alignment at P-littoralis_Contig80:380103..380636+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig80.54.1 ID=mRNA_P-littoralis_Contig80.54.1|Name=mRNA_P-littoralis_Contig80.54.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig80:380103..380636+ (Pylaiella littoralis U1_48)
AGGTGGGGCAAGAAGTTACGTTCCGGCAACGCAAAGAATCCAACAGAGCT
CGCAACAAGGGGTTTATGTGCGGGAAGATTACGCGCCCGAAGTACGACGA
AGGGAAGGACACGCCGACCTCGGTGCACGTTAAGACCGTCGAAGGAAACA
CGTCTAAGGCTTGGGGCATGAAGCCCTCGGAAATCCGGATGCCTCCTCCA
CTTGATTATGTAAGCTTTTGCGTGGAGCTTAAGGTAACCCGCGTACGGCG
TTTTGGTTTACGCAATATGTCGCCCGTCACGTTCTTGTTGGTGAAATTTT
TAGCCCCGGCGGGTCTACCACCACAGACGAAAGAGTGCCTCGATTATGCC
CCCCCCTCCCCGAGTCACCCCAAGTCAAGAAGCACGGCGACGCCCCCGGT
TGTGTGTCGCGCAGGAGATCCAATCTACGATGGACGAATACACCAATCAA
GCGCACAGGCCGGGGGGGTGGTAGCATGACAGAAGCGAGCGAGCCGAAGG
CCACAGCAGCGGCCCACCCCGGTCGAGCATTCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig80:380103..380636+

>mRNA_P-littoralis_Contig80.54.1 ID=mRNA_P-littoralis_Contig80.54.1|Name=mRNA_P-littoralis_Contig80.54.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig80:380103..380636+ (Pylaiella littoralis U1_48)
ATGTGCGGGAAGATTACGCGCCCGAAGTACGACGAAGGGAAGGACACGCC
GACCTCGGTGCACGTTAAGACCGTCGAAGGAAACACGTCTAAGGCTTGGG
GCATGAAGCCCTCGGAAATCCGGATGCCTCCTCCACTTGATTATGAGATC
CAATCTACGATGGACGAATACACCAATCAAGCGCACAGGCCGGGGGGGTG
GTAG
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