mRNA_P-littoralis_Contig8.245.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.245.1
Unique NamemRNA_P-littoralis_Contig8.245.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig8.245.1 vs. uniprot
Match: D7FKW4_ECTSI (Chloroplast 50S ribosomal protein L15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW4_ECTSI)

HSP 1 Score: 415 bits (1066), Expect = 1.630e-138
Identity = 208/232 (89.66%), Postives = 219/232 (94.40%), Query Frame = 1 
Query:    1 MKATLATTALLLVGTANAFFAPTAFTGQQLTTGISQPSRAATGVTMKIFDWKRRESEDGKVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLSALNGLEEGATVNFDSLLDAGKITKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCELLSPTTNKVVSMEDEDDE 696
            MKATLATTAL  VG ANAFFAPTAFTGQQLT G S PSR  TGVTMKIFDWKRRESEDG VLDRVAVDTLKPAPGSR RHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKL ALNGL+EGATVNF+SL  AGK+TKTKHRWHKVVGGMELET+GLTVQAHGFTKSAVEAIEAKGGKC+LLSPTTN+V+SM++E++E
Sbjct:    1 MKATLATTALFCVGVANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE 232
[Close]
BLAST of mRNA_P-littoralis_Contig8.245.1 vs. uniprot
Match: A0A835Z4H5_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H5_9STRA)

HSP 1 Score: 274 bits (701), Expect = 4.210e-84
Identity = 142/227 (62.56%), Postives = 172/227 (75.77%), Query Frame = 1 
Query:    1 MKATLATTALLLVGTANAFFAPTAFTGQQLTTGISQPSRAATGVTMKIFDWKRRESEDGKV-LDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLSALNGLEEGATVNFDSLLDAGKITKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCELLSPTTNKVVSM 678
            M++ L   A L++   +  F  +AF GQ L    +   +A++ ++MKIFDWKRRES+   + +  ++  TL P+PGSRHR  RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L ALN   EGATV+F++L + G +TKT  RWHKVVG  EL   GLTVQAH FT SA EAIE  GGKC+LLSPTTN++V M
Sbjct:    1 MRSFLYLAACLVIAAVSDAFTASAFHGQAL---CAATGKASSSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 224
[Close]
BLAST of mRNA_P-littoralis_Contig8.245.1 vs. uniprot
Match: A0A836CHQ3_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ3_9STRA)

HSP 1 Score: 271 bits (692), Expect = 9.270e-83
Identity = 139/217 (64.06%), Postives = 166/217 (76.50%), Query Frame = 1 
Query:   31 LLVGTANAFFAPTAFTGQQLTTGISQPSRAATGVTMKIFDWKRRESEDGKV-LDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLSALNGLEEGATVNFDSLLDAGKITKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCELLSPTTNKVVSM 678
            L+V  A+A+ A +AF GQ + T   + S A   V+MKIFDWKRR+ +     +  ++  TL P+PGSRHR  RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L ALN   EG+TV+F++L + G +TKT  +WHKVVG  EL    LTVQAH FT SA EAIE  GGKC+LLSPTTN++V M
Sbjct:   12 LVVAVADAWVATSAFNGQAVGTHTCKASNA---VSMKIFDWKRRDDDSANTAVKELSPATLVPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGSTVSFETLHEQGTLTKTSLKWHKVVGNGELNVKNLTVQAHAFTGSAKEAIEGAGGKCQLLSPTTNEIVDM 225
[Close]
BLAST of mRNA_P-littoralis_Contig8.245.1 vs. uniprot
Match: A0A7S1BF06_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF06_9STRA)

HSP 1 Score: 248 bits (634), Expect = 3.130e-74
Identity = 126/189 (66.67%), Postives = 144/189 (76.19%), Query Frame = 1 
Query:  121 ATGVTMKIFDWKRRESEDGKVLDR----VAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLSALNGLEEGATVNFDSLLDAGKITKTKHRWHKVVGGM-ELETSGLTVQAHGFTKSAVEAIEAKGGKCELLSPTTNKVV 672
            ATG TMK+FDWKRRE+++  + D       +D LKPAPGSRHR KRKGRGIAAGQGA+CGFGMRGQKSRSG   RAGFEGGQQPLYRRLPK VG+PMGPGH+K  +NLIK   +NG  EG+TV+F SL +AG +TK K+  HKVV G  E    G+TVQAH FT SA  AIE  GGKCELLSPTT  V+
Sbjct:   34 ATGPTMKVFDWKRREADESAINDAETFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKTDEINGAAEGSTVSFGSLFEAGDVTKAKYGIHKVVTGKKEFSAKGVTVQAHAFTNSARAAIEGAGGKCELLSPTTGAVL 222
[Close]
BLAST of mRNA_P-littoralis_Contig8.245.1 vs. uniprot
Match: A0A7S1BKP2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKP2_9STRA)

HSP 1 Score: 246 bits (629), Expect = 1.690e-73
Identity = 127/192 (66.15%), Postives = 145/192 (75.52%), Query Frame = 1 
Query:  112 SRAATGVTMKIFDWKRRESEDGKVLDR----VAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLSALNGLEEGATVNFDSLLDAGKITKTKHRWHKVVGGM-ELETSGLTVQAHGFTKSAVEAIEAKGGKCELLSPTTNKVV 672
            S + + +TMK+FDWKRRE+++  + D       +D LKPAPGSRHR KRKGRGIAAGQGA+CGFGMRGQKSRSG   RAGFEGGQQPLYRRLPK VG+PMGPGH+K  +NLIKL  LNG  EG+TVNF SL ++G ITK+K   HKVV G  E    GL VQAH FT SA  AIE  GGKCELLSPTT  V+
Sbjct:   31 STSTSSLTMKVFDWKRREADESAINDAENFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKLDELNGAAEGSTVNFASLFESGDITKSKVGIHKVVTGKKEFTAKGLIVQAHAFTSSAQTAIEGAGGKCELLSPTTGAVL 222
[Close]
BLAST of mRNA_P-littoralis_Contig8.245.1 vs. uniprot
Match: A0A7S2K337_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K337_9STRA)

HSP 1 Score: 245 bits (625), Expect = 5.900e-73
Identity = 126/205 (61.46%), Postives = 148/205 (72.20%), Query Frame = 1 
Query:   73 FTGQQLTTGISQPSRAATGVTMKIFDWKRRESEDGKVLD----RVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLSALNGLEEGATVNFDSLLDAGKITKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCELLSPTTNKVVS 675
            F+G QL    S  S     + MK++DWKRRE+++  + D       +D +KPAPGSR R  RKGRGI+AGQGA+CGFGMRGQK+RSG   R GFEGGQQPLYRRLPK VGRP GPGH K  +N IKLS LNG  EG+TVNFDSL +    TK+K+  HK+VGG EL   GLTVQAH FTKSA EAIEA GGKCELL  TT +V++
Sbjct:   23 FSGNQLQCTTSNQSN----LNMKLYDWKRREADESAINDVENFEFTLDNIKPAPGSRKRFTRKGRGISAGQGATCGFGMRGQKARSGRPTRPGFEGGQQPLYRRLPKFVGRPTGPGHEKTIYNTIKLSELNGAAEGSTVNFDSLFETKATTKSKYSIHKIVGGTELTAKGLTVQAHAFTKSAREAIEASGGKCELLKATTGEVIA 223
[Close]
BLAST of mRNA_P-littoralis_Contig8.245.1 vs. uniprot
Match: A0A448ZNF8_9STRA (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNF8_9STRA)

HSP 1 Score: 235 bits (599), Expect = 3.710e-69
Identity = 125/221 (56.56%), Postives = 162/221 (73.30%), Query Frame = 1 
Query:   28 LLLVGTANAFFAPTAFTGQQLTTGISQPSRAATGVTMKIFDWKRRESEDGKVLD----RVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLSALNGLEEGATVNFDSLLDAGKITKTKHRWHKVVGGMELETS-GLTVQAHGFTKSAVEAIEAKGGKCELLSPTTNKVVS 675
            +LL G A+   A ++FTG +L    +  + +A  ++MK+ DWKRR +++  + D       +D+L+PAPGSR +  RKGRGI+AGQGA+CGFGMRGQKSRSG   R GFEGGQQPLYRRLPK  GRPMGPGHTKK++NLI+L ALNG+  G+T NF+SL ++  +TK+KH  HKVV G E  T+  +TVQAH FTKSA  AIE  GGKCELL P+T +V++
Sbjct:    7 ILLAGVASTD-AFSSFTGTRL---AAVSTSSANTLSMKLHDWKRRTADESDINDVENYEFTLDSLRPAPGSRKKKTRKGRGISAGQGATCGFGMRGQKSRSGRPTRPGFEGGQQPLYRRLPKFTGRPMGPGHTKKEYNLIQLDALNGVAPGSTCNFESLFESKAVTKSKHSTHKVVVGREEFTAKDITVQAHAFTKSARAAIEGAGGKCELLKPSTGEVIA 223
[Close]
BLAST of mRNA_P-littoralis_Contig8.245.1 vs. uniprot
Match: A0A5J4Z048_PORPP (50S ribosomal protein L15 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z048_PORPP)

HSP 1 Score: 234 bits (598), Expect = 5.540e-69
Identity = 119/193 (61.66%), Postives = 144/193 (74.61%), Query Frame = 1 
Query:  115 RAATGVTMKIFDWKRRESE--DGKV-LDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLSALNGLEEGATVNFDSLLDAGKITKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCELLSPTTNKVVSMED 684
            R A   +MK+FDWK+R +E   G+  +  ++V T+ PAPGSR R  RKGRG+AAGQG SCGFGMRGQKSRSG   R GFEGGQ PLYRRLPK VGRPMGPGHTK  +NL+KL  LN   EG  V FD+L+++GK+TK K +  K++GG EL    LTV+AH FT SAVEAIEA GGKC LLSPTT + ++ME+
Sbjct:   32 RRAVAPSMKVFDWKKRGAEAYSGRAEMGEMSVTTVIPAPGSRKRKTRKGRGVAAGQGRSCGFGMRGQKSRSGNPTRPGFEGGQTPLYRRLPKYVGRPMGPGHTKTMYNLVKLDILNKCAEGEVVTFDALVESGKMTKGKFKLAKIMGGAELTVKNLTVKAHAFTSSAVEAIEAAGGKCVLLSPTTGEDINMEE 224
[Close]
BLAST of mRNA_P-littoralis_Contig8.245.1 vs. uniprot
Match: A0A1Z5JPE4_FISSO (Ribosomal_L18e/L15P domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPE4_FISSO)

HSP 1 Score: 234 bits (597), Expect = 8.550e-69
Identity = 121/197 (61.42%), Postives = 143/197 (72.59%), Query Frame = 1 
Query:   97 GISQPSRAATGVTMKIFDWKRRESEDGKVLD----RVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLSALNGLEEGATVNFDSLLDAGKITKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCELLSPTTNKVVS 675
            G+S   ++++ + MKIFDWKRR +++  + D       +D LKPAPGSRHR  RKGRGIAAGQGASCGFGMRGQKSR+G   R GFEGGQ PLYRRLPK VG+P GPGH K  +N+I   AL     G+TV FDSLL++  +TK+K   HKVV G     S LTVQAH FTKSA +AIEA GGKCELLSPTTN V+S
Sbjct:   32 GLSSVPKSSSCLKMKIFDWKRRTADESLLNDVEKTEFTLDNLKPAPGSRHRKSRKGRGIAAGQGASCGFGMRGQKSRAGSPTRPGFEGGQIPLYRRLPKFVGKPTGPGHEKTIYNVISTDALEKAAAGSTVTFDSLLESKIVTKSKFDLHKVVMGKGTPASNLTVQAHAFTKSARQAIEAAGGKCELLSPTTNAVIS 228
[Close]
BLAST of mRNA_P-littoralis_Contig8.245.1 vs. uniprot
Match: A0A1E7FLQ7_9STRA (Ribosomal protein L15 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FLQ7_9STRA)

HSP 1 Score: 231 bits (588), Expect = 2.200e-67
Identity = 120/219 (54.79%), Postives = 155/219 (70.78%), Query Frame = 1 
Query:   34 LVGTANAFFAPTAFTGQQLTTGISQPSRA-ATGVTMKIFDWKRRESEDGKVLD----RVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLSALNGLEEGATVNFDSLLDAGKITKTKHRWHKVVGGMELETS-GLTVQAHGFTKSAVEAIEAKGGKCELLSPTTNKVV 672
            LV +++AF   + F G  L T +   +     G+TMK++DWKRR++++  + D       +D L+PAPGSR    RKGRGIAAGQGA+CGFGMRGQKSRSG   R GFEGGQ PLYRRLPK  GRPMGPGH+KKQ+N+IKL  LN ++ G+  NF+SL  AG +TK+K+  HK+V G +  T+  +TVQAH FTK+A  AIE  GGKCELL P+T +V+
Sbjct:   15 LVASSDAF---STFMGSSLRTSVPTTNAGNGDGMTMKLYDWKRRDADESAINDVESFEFTLDNLRPAPGSRKSRTRKGRGIAAGQGATCGFGMRGQKSRSGRPTRPGFEGGQTPLYRRLPKFTGRPMGPGHSKKQYNIIKLDQLNNVDSGSVCNFESLFTAGSVTKSKYDTHKIVVGKDDFTAKDITVQAHAFTKTARTAIEDAGGKCELLKPSTGEVI 230
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKW4_ECTSI1.630e-13889.66Chloroplast 50S ribosomal protein L15 n=1 Tax=Ecto... [more]
A0A835Z4H5_9STRA4.210e-8462.56Chloroplast 50S ribosomal protein L15 n=1 Tax=Trib... [more]
A0A836CHQ3_9STRA9.270e-8364.06Chloroplast 50S ribosomal protein L15 n=1 Tax=Trib... [more]
A0A7S1BF06_9STRA3.130e-7466.67Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1BKP2_9STRA1.690e-7366.15Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2K337_9STRA5.900e-7361.46Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A448ZNF8_9STRA3.710e-6956.56Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A5J4Z048_PORPP5.540e-6961.6650S ribosomal protein L15 n=1 Tax=Porphyridium pur... [more]
A0A1Z5JPE4_FISSO8.550e-6961.42Ribosomal_L18e/L15P domain-containing protein n=2 ... [more]
A0A1E7FLQ7_9STRA2.200e-6754.79Ribosomal protein L15 n=1 Tax=Fragilariopsis cylin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:1035706..1044089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKW4
Preferred namePRPL15
PFAMsRibosomal_L27A
Model size2141
Max annot lvl2759|Eukaryota
KEGG koko:K02876
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categorychloroplast
GOsGO:0000311,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0019538,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons6
Evalue1.99e-146
EggNOG OGsCOG0200@1|root,KOG0846@2759|Eukaryota
Ec32 ortholog description50S ribosomal protein L15, chloroplast
Ec32 orthologEc-17_001600.1
Descriptionstructural constituent of ribosome
Cds size699
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.245.1prot_P-littoralis_Contig8.245.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 1037148..1044089 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791642.671225-UTR-P-littoralis_Contig8:1035705..10371471680791642.671225-UTR-P-littoralis_Contig8:1035705..1037147Pylaiella littoralis U1_48UTRP-littoralis_Contig8 1035706..1037147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791642.6850483-CDS-P-littoralis_Contig8:1037147..10372641680791642.6850483-CDS-P-littoralis_Contig8:1037147..1037264Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1037148..1037264 -
1680791642.6994665-CDS-P-littoralis_Contig8:1037656..10377361680791642.6994665-CDS-P-littoralis_Contig8:1037656..1037736Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1037657..1037736 -
1680791642.7179492-CDS-P-littoralis_Contig8:1038401..10384831680791642.7179492-CDS-P-littoralis_Contig8:1038401..1038483Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1038402..1038483 -
1680791642.7294052-CDS-P-littoralis_Contig8:1039503..10397421680791642.7294052-CDS-P-littoralis_Contig8:1039503..1039742Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1039504..1039742 -
1680791642.738987-CDS-P-littoralis_Contig8:1043509..10436411680791642.738987-CDS-P-littoralis_Contig8:1043509..1043641Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1043510..1043641 -
1680791642.7546132-CDS-P-littoralis_Contig8:1044040..10440891680791642.7546132-CDS-P-littoralis_Contig8:1044040..1044089Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1044041..1044089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.245.1

>prot_P-littoralis_Contig8.245.1 ID=prot_P-littoralis_Contig8.245.1|Name=mRNA_P-littoralis_Contig8.245.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=233bp
MKATLATTALLLVGTANAFFAPTAFTGQQLTTGISQPSRAATGVTMKIFD
WKRRESEDGKVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMR
GQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLSAL
NGLEEGATVNFDSLLDAGKITKTKHRWHKVVGGMELETSGLTVQAHGFTK
SAVEAIEAKGGKCELLSPTTNKVVSMEDEDDE*
back to top

mRNA from alignment at P-littoralis_Contig8:1035706..1044089-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.245.1 ID=mRNA_P-littoralis_Contig8.245.1|Name=mRNA_P-littoralis_Contig8.245.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8384bp|location=Sequence derived from alignment at P-littoralis_Contig8:1035706..1044089- (Pylaiella littoralis U1_48)
ATGAAGGCTACTCTCGCGACTACGGCGCTCTTGCTTGTGGGGACAGCCAG
TGAGTCAATACGTTATGCGTTAATCGTTTTCTCTTCCTACCGCCGTCGAC
TTGTTGAGCACGACCACACGACATGTCAGACTGCTTGAAGAAACGCATGT
GTTGGTGTCAAGTCTCTGTTCTCAGCCGCCGATTTACTACTGTCGCTGGT
TGGCTAACCTTTGTGGCATGGCTGGTGCCCGAATGTTTAACATCATTGGT
GCTAGAGTGGTCGTCAATCGATTTATACGTTGCCAACGCCGCGGAGTGCT
GGCGGTGCAAGTCTTGAGATAGGACAGAGGCATCTGTATTTATATTCGAG
CGTTCACCGGGTCAACATGTGTGCGTGTTTCTCTTTAGAGAACCCTCAAA
CCTCAAACGTTTGATTTTGCGTTGTGACGCAACTCCACTCCCTGCCAGAT
GCGTTCTTCGCTCCCACCGCCTTTACTGGCCAGCAGCTTACGACGGGCAT
CAGTCAGCCATCGAGAGCGGCGACTGGTGTGACCATGAAAATTTTCGACT
GGAAGCGACGAGAGAGCGAAGACGGCAAAGGTGAGGCCACGAAGGGCACC
AACGAAACTCTCATGACGGCGTGAGGCGGGCTCAGTCCCTGTTTCGACCA
AATCTAATTTTCCCACACATCAGAGATAGACATAACAGCACAAAAATCAT
ACTTCGAAGTATTACTGGATGCATATTGTCATACATATAATATGCTACCA
CGTTTAGTGCATTTCAGGGATAGAAATGAAACTGCTGTATGCCCCAAAAA
GAAAACCTGCGGGGTTTCGCATCTCCCAGGAATGGCCAACACACAGCAAT
TACTGGTATTCCATAGCAGTAATAAAAGCACGTTTGGTTTTCATGTTCTT
TCCGCCGCAGCTTTCGAATCTATCGAGAAGGTATTATACCGGTAGTATCA
TGTGTGTTCTACTCGTACATACGAGGATGAGATCCACGATAGCCTGAGGC
TGAGGTAGTCCCGAAGGATTATTACTGGGACACATTATAGACAAAAAACG
CTTCAACCGTAACGATCTCTTCCCCTCTGTACGAGTATAACCCCAGTCAT
CTCCAGCCCCTCACAAGCCACCGCTCTCGAAATTGGTATGGCCTTCTGCT
GTACTTATTTGGTGTGCGAGGCGCGTCGTAAATCGAATCATCCAAACGGC
GGCGGCAGGCGGCTAAAAATCAAGGACCCGAGATTTTGTCGAGTCACAGC
AGTACCAATTTGCAGCATCAAAAATGCGGTCGAACTGAGACACGGGTGTT
TAACAAGTGCGCTTAAGGGCCTGTTTAACGGTAAATGTGACCCCCGGATT
GGAAAGCTAGTTGGAATTGGAATTGCTTCTGGTCGGTCAATCAACTTTTT
ATTCTACGGGCTAGCTTTTTCCTCAAAACAAATAAACCTCGAGAGGTTGA
TTTGTGGAATCCGACGAATCGGTATTGGAATGGCCAAGGGAGTTGGTCAG
AGAAACGAAATGCGGTGGATGAAATGACAACAAGTTTCGTGTACAGCACA
GCAGTACAGCAGAAGTGTTTTCAACCAAAGAGACCGACGAAACGCACGCA
CGCAGCTAGCAGCAAGCAGCTGCTGCTGTTGCTGTGGGAAGACCTGTGGG
GCGCACCCACCCTCACACCCACACTAACCCACACACACTCGTATATACTC
TGGAGTACTATGTACACAAACACGTCTGCTACGTGCCGATGGCTGACATG
AACCATGAACTTGGCCAGCTGGCGGCAGATAGTGCCCTACCAGGTATCTG
CTAATCACGGCGCCTGCCGCCGCTTGTCGGCAGACGCCAGGGAATACGTA
TTCGGCTTCGCCGACGAGGGTAGGGACCGCGGATCCCTGCTCGCGAGAAA
AAATCTCACGCATCTACCGCAGAAGGAAGGTGGAGGTAACCCCTCCTGTG
TTGACCTTCCTCCTGTGTGACCCCGTCGACGGGCCTAGCCTGTAGTTTGA
ACCGCAAGGTGCAGACTAGTGTGCCAGAGAACATGGGATGACAACACACG
TGCGTGGATGCGTTCTACAGATGGCAAGGTAGTACAGGTACAGACATGTG
TACCTTGTTTGTGTAGCCGCGCTGGCGTCCAGAGCGTTCAACCGCCTGTC
AACCGCAGTTGCTTTGTTGGGGGTTTGCATGTATATCGCATCTTTCGAAC
GCAGACCAGCTATAACTGCTCCGCCCAATCCTGGTGTTACGCTTTCCTTT
ACAACGACATGGGTCTTTTTCCCATAAAAGCTTTTAAGATCTGTCCAAAT
TCGGCCTCCACTTCGGGTGTCACATTTTCCGTAAAAACAGACCCGAACCC
TTTGAACACCAGGTCGAAAAAAAAACATGGAGCCAAAAATGACCCGAACG
AGGTGCCCGATGATCGGGCAATGATGAACAGTCCTTGAAAAAATCATGCA
CACACGTCTCGCTGACGCTCTCGAGTGAACAGAAAAGGGTGACTGGTATG
TACACTGGAATCTGTCCCCAATTTGCCGACAATATATGGGGACAGATTCC
AGCGTAAGACTAAATACATCAAACTGACATGGGGTGCTCGCCTACACAAA
GGTTTCTTGTGAGGATCTTACATCATACACGATTGCTTTCGCACGTAATA
CAGGGGATCAACCCCACAACACCACCAGCGAGCATGTTAGATCGAGATTA
CCCGCACGACAATCACGCAGCAGGGTCACCACCGGAGGTTGTACCTACGC
ACGACTAACGCAGCGTCTACAGCAGCAGCATCAAGCGGTAGTATACTCAT
CAGTAGTACCTGATACATACAGCTGCCGTACAGCAGACAGCAGTAATGGC
AGTTATATATATGCACGGTGCATGTGTGTGCAAGGTAAGGGTGTCGGCAA
GGTGTGATACGAGATTTAGGCTATGTTTGTGAGGTTCTAAACGTGGCACA
ATATGTTTGTTTATGGTGCCGGCCCGCGAGCGCGTATGTGTGTGTGTGTG
TGACCAACCAGTCGTAAACATCAGCGACATGCAACAGCAGCAGCAGTAGC
AGCAGAAAATGTGGTATACTTGCGTGGTTACGTGGCCACGTAACAAAAAT
ATACAAGGCGGTGCTTCAGTGCAGCAAGCAGCAAAACAGCAGTAGCAGCG
GTAAAAGTCCAACATGATGTATCATAATGTATGTGGACAAGGAAGAGAGG
GAGAGAGTACACAACCGTACGGTCGGGCGCGCGCGTTTGTGGGTGTGTGT
GTGAGGAGAGGAGAGGAGAGAGGCCACGCTGCCCCCCATAAACAAAAACA
ATGTGGCACCGAGGTAGCCAATAATTGGTTGGTTCACGAACAGTACATCG
AGCACACGGAACCACACCCAAAATACCAGTAGATGACCGCATTCAAAACC
CAACCCACAAAAAAAGACGAGTGTACCTAAAAATTTCCCCAATGCGGTTT
CCGGCGCTCAATGGTTTTCGGCCTTTTTTTTCCGAACCTACCGCATTACT
TACGAATTACCAAGTACATTTTAGGGCAAAATGCTTTGGGTTCTAAATGG
AGTGCTATGACGTCCTTTTCATGTCTGCAGTGAGAATATCCCCGTACGCA
TTTATCCGTGCTTTGCGTGGGCGATTTATTTCGCGCACAATGATATTTAT
TCGGAATGTATAAGCGTCACCCGCGTCAACCGCAGTCAGACTCACCGACT
GATTACTTCTACAGCAGTTATGAAAAACTGACAAACCTCTTTTCAAGAAG
GCCCCGTGGTTGGCCTAACGGCCACCGGCGCAGAGCGTTACGGAGGTACT
GCTTGAACGGTCATCCTCGTGCTGATTTGAAAATAGTTGACGTAAACGTG
TACCCCCCTCAAGAGTTGTGTGTCGTCCCATCACAGTCAAGTAGTCAAGT
AGTCACGAAATGTTTCCGCGGCAACAAGCTCAGGAGCCACACACACACAT
CCTGAACACGTCTAGTTCTCGCTTCCATCGTTGTGCGTGGCGCGGGCATG
TAAGGAGTGGCATACCACGAAATGAAGCTTCACTCGAATATTGCAAAATG
AACGCCGCACGCAACTGTTGTAAATCCCAGCCAGCAACGCAAGCTGCTGC
TGTATGCAGACGACTGGTGCTGGTGATGATCATCTACCGAGTAAACATCA
AATTACCTGCAGCAGTTGAAAACAAACTTGCAGCCACAGTTATCAGCACT
CACTGGGCGTGTGAAAACCGCCACTTGCTGTGACGTCCCTGGTTATTGCG
TGCCGGCAAGAGGAACACGTTTACTGGACGTGCCCCCACATGTCTGATAA
CTGCGGTTTTCGTTTTTTTTCCGGTCTCGACTGTTGTGGGGTTCCAGTAC
TCGACAGGGTCGCGGTGGATACTCTCAAGCCTGCGCCCGGCTCGCGCCAC
CGCCACAAGCGGAAAGGGCGTGGTATCGCTGCCGGGCAGGGGGCCTCATG
CGGGTTCGGTATGCGAGGGCAGAAGTCTCGTTCCGGACCTGGAGTACGGG
CTGGATTCGAGGGAGGACAACAGCCTCTTTACCGCCGCCTACCGAAGTTG
GTCGGTCGTCCAATGGGCCCCGGGCACACCAAGAAGGTCGGTGTTACACA
AGTGTGCTCCACGACTCACGACCCACCAATTTGACACGGGTATCCACCAC
CTGTAGTGGAGGTTTCAAGTGTGCTCAGTCAACGAAGTATAAAAAAACCC
TCATGGTTCCACCCGCTTGATTTGAAGCGCTCTGTACGTCAGTCGGAATT
AATCCCCCTAGCGGCTTGCCGACATTTGTCGTGCGGCACATTGAACGAAG
CACTGTTGAATATCGAAAATATATATTTTGCCAGCAAGCCCAGTAATCGT
TCGCCACTGCTGTGGGACGATAGTTTGTCACGACAATCTTGCCCATATGG
TCGATTTTGCCTGCATTTAAAGATACGTTCCAACTTTTGTTCGCTTGTCT
AGAAGTGGCAGCCAAACAACTGTAATGATGGTCATCCGTGACTCCAGGAA
AAAGATTGATAATTTCAGACACAACGTCGTTCGTGTGTGCTTACTTGTTT
AGTTAACTTACACCAAAGTTCTCTGTTGTTACTGTGAGTCCATGACACCT
TTCAAGCCGTCCAGTTCCTACGTTTGATACTTCGAAGTCTGTGTTTCTAC
GGCTCGCGGGGCGTTCCCTAAAATCGACGAGGAGCTTGGAACGTAACTCC
TAAATAAAAATTCCACCGGTATCGAAGTAAGAGAGGGTCCAGCACGAAAT
GTGACGGCGAAGCACCCATAGTAAGAAGCGCAGCCAAAGTCCCAATCCAT
CAAAGAGGAGTCAAAATAACTTTTTCATAAAGGCATTTGTGTGAGGACGG
TATGGTATGAGCAACTTTGTGGTATTGCAGGGAAAAATATGACCCAAATG
AAAGTCAGCGCCGACCACGATTGGAGTTGGTTACATAATTTTACCGTGTG
TCGTCCGCCTTAGCGTAACTTAGGAGTTTTGTGATCTTTGACGTTCTAGC
TAATTTAGCTGCTTGAGGGCTATCCGGCTGCTTTTCTCTTTTCTTGGGCT
TGTTTGCCTTTGCCCTTCTTACCCCTTTTTCCGGTGGCAACTTTTCCTGA
TCGCAGCAATTCAACTTGATCAAGCTTAGCGCTCTCAATGGACTGGAGGA
AGGCGCCACGGTGAACTTCGACTCGCTTCTCGACGCTGGTAAGTTGTGCA
TCTTCTCGCGGAAGCAAGACTCGTGGATGCTTGACAGCACGTGGCCTTTT
GTTTCGCGTGTTTTATCTATTTCGGCCTTTGCGAAGGGACGAAACCACGA
TTGACTGTAAACGGATGGGGGATGTGGAATTAAAAATGGGGAACATGACG
CTCCCGATGCATCCCCTCCTAGTAATCTTGGTTCTTTGCCTGTTTTGCGG
GTGTATCTCTGATCAATAGTTTTGCGCGACACAAACGTGGGGCCTCCATA
CAGCCTTCATTGGCGTCGATAATAATTTTGCTGTCAACACATTCCGTATT
TCACGGTGCCGTGTTTTTCGAGAGGGGAGCGCCACTACGATCAATGTTCT
TTTCCCCTAGTTTTCTCAGAGCCGGGTCACGAATATGATAAAAGGTCGGT
CACACGCAACGAGACGCTTCTTTTTGGTGGGTTTTCACACGATTTTCAAC
CCCAAAGCGCCACATACTTTGCCCACGTCCGAAATATTTCATGTTACACC
AAGATACAAAAGCATCGCCGCTTGTTTCGATTTTCATCATGGATCGCTCA
CCCACAAGCACTGCATCATGCTCCGGAGTATAAATTCATGTGTTTTGGCG
GGCACTGCTAGCGTGAAAAGTAGAAAGTGACCTCGGCGGTAACATGGTGC
CAGGTAAAATCACCAAGACCAAGCACAGGTGGCACAAGGTTGTAGGTGGA
ATGGAGCTGGAGACGTCCGGGCTCACGGTACAGGTACGAGCTGCCCACCG
TATTTAATTACCCCACACGTCTCAAGCTGATGTTCAGTGCTCGGTATTTC
CGTACTGTAGCAGTGCGCAAGGGGATTTATGGCGGTGGCAACATGTTGCC
CGCGAATTGTATCGTCTGGTATTTGTTGGCACCGTGTTGGCCGGGGTGAA
GCCGAGCTTCTAAAGTTGTTGGCTTGACGTAATTTTCGTGAAACAACTTG
GTCACTGGCAAAGTCACCAATAGGACTACAATATCAGATAACGAGTTTTA
CGCTCTGTTGAGCAAGGAAACTGCTCGTTTCCATAGCTTTGGCAGCTGTG
CGAGTCTTGCAACGACCAACTCTTGGATACTTATCTTGTTCCGGTCCATG
CTCTGTCATGGTTGTTTGAAATCAGGCCCACGGATTCACGAAGAGCGCAG
TTGAGGCGATAGAAGCAAAGGGCGGGAAGTGCGAACTCCTCTCCCCAACG
ACGAACAAGGTTGTGTCGATGGAGGACGAGGACGACGAATAGTAGGCCAT
AATTCAGCACGCAGCGGTTGACAAAGTGGACTCGTGCCACAGAGCATCTG
GAATCCTGACTGGCGCTCGTGATCGTTGTTGTAAATGATGGGGGAATCTG
TCAGATCTACTCTCCTTTGACTCCAAGTGCTGTTTGATTTTCGTTGCGTA
ATGACTCAGGGTCATTCCCGCACACCTACTGCATTTGATTTTCGTTTGCA
CAAGATTTTTGAAAGCGAAAAAGGACCTCTTTCTTATCAGTTTGAATTGT
GGGCTAACAGGCGCACAACACAAATCGGTAGAAAAACATTTATGGCACAA
AGCATCTTGGGTCCTGCCTGTTGTTTTTTGGAATTTTCGAAATTTCGCCT
CAGGTTCGTTGACCAATCAGCGAACTGCGTATCTCAAATGTTTTTCTGGC
AGCTATACCGCCGTAAAGTGAGAACTGGCGAATACACCTGCCGGCCCAGA
TGCCCGTCCGCACAGGTCGTGTGGAGTTAGTTTTTGTTGCGTGAATCTCC
CCCCATGGTCGATCATGCGATCTCGGTATATACTTCTGTTTGGACATGTC
ATAACACCCTGGATAATGGGTTGCATATCGATATGGAACCGATAGGATCC
TTTTGTATATGACGCTTATTGCGGCCTCTAATAGGCATTGATAAATTATT
TTTGCACTCATCGGTTCCGGGAATAGGTATTGATTTCTTAGTTGTGCCGG
ACATTGGTAAGTCAGTCGTGCTTGACATGTATTTACAAATGATATTGCTC
CAGAGAATACCTGTCGACATTGCCGGAAGGTATCTTCCCCGCGCCAGGTA
TTGCTATGGACAGGGTTAAGGGTATTGCGTTACACAACAGGTATCGCTGG
TTATTAGCCTAACATGTTACTGCAGGCAATACCTATCGAGACATCTTGCA
AAAGATACTGAGTTACACAAAACTTATCAATAGGTTCTTCTGCAAACCTT
TTGCCTCAGAAAAACCTGTCGATACTCTGCTGCGAACATACTGAGTCACG
CAACAGGTGTTGGAGGCAAAAGGTTGCAGTTCACTCCTTAAGCCCTGGAT
AACACCATATTGGATGGGTTGTTCGTCCGGCAATATGGTCTTCAAGTCGA
GATTCAATACCTGTTGCGGCTACAAAGAACGTTGGCTGTGGCGTATCGAT
AGGTATTGAAGGTGGCAATACGTTACGTAACATCTTATCAAAAACACCCG
AGCCGATTGGTCGTCTGCAGAAAATATCTCGAAACGTGTTGCTCCCCAAC
AGTTTTTTTTACACTCTGTCGATACATCATTCGGAAGTATGTTTCCCCCC
TATATTCTGGTATCCATTCGAGTAACCAATAGTCTGAAAGTGAATCTGAC
AAAATTTGTTTGAGTTACCAGTACGTAAAGGTATATAATACCAATACCTT
TTGAGACCAAATATGTTTACAATGTTTTCTAGCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig8:1035706..1044089-

>mRNA_P-littoralis_Contig8.245.1 ID=mRNA_P-littoralis_Contig8.245.1|Name=mRNA_P-littoralis_Contig8.245.1|organism=Pylaiella littoralis U1_48|type=CDS|length=699bp|location=Sequence derived from alignment at P-littoralis_Contig8:1035706..1044089- (Pylaiella littoralis U1_48)
ATGAAGGCTACTCTCGCGACTACGGCGCTCTTGCTTGTGGGGACAGCCAA
TGCGTTCTTCGCTCCCACCGCCTTTACTGGCCAGCAGCTTACGACGGGCA
TCAGTCAGCCATCGAGAGCGGCGACTGGTGTGACCATGAAAATTTTCGAC
TGGAAGCGACGAGAGAGCGAAGACGGCAAAGTACTCGACAGGGTCGCGGT
GGATACTCTCAAGCCTGCGCCCGGCTCGCGCCACCGCCACAAGCGGAAAG
GGCGTGGTATCGCTGCCGGGCAGGGGGCCTCATGCGGGTTCGGTATGCGA
GGGCAGAAGTCTCGTTCCGGACCTGGAGTACGGGCTGGATTCGAGGGAGG
ACAACAGCCTCTTTACCGCCGCCTACCGAAGTTGGTCGGTCGTCCAATGG
GCCCCGGGCACACCAAGAAGCAATTCAACTTGATCAAGCTTAGCGCTCTC
AATGGACTGGAGGAAGGCGCCACGGTGAACTTCGACTCGCTTCTCGACGC
TGGTAAAATCACCAAGACCAAGCACAGGTGGCACAAGGTTGTAGGTGGAA
TGGAGCTGGAGACGTCCGGGCTCACGGTACAGGCCCACGGATTCACGAAG
AGCGCAGTTGAGGCGATAGAAGCAAAGGGCGGGAAGTGCGAACTCCTCTC
CCCAACGACGAACAAGGTTGTGTCGATGGAGGACGAGGACGACGAATAG
back to top