mRNA_P-littoralis_Contig8.239.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig8.239.1
Unique Name	mRNA_P-littoralis_Contig8.239.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig8.239.1 vs. uniprot
Match: D7FKW2_ECTSI (Sld5 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKW2_ECTSI)

HSP 1 Score: 383 bits (983), Expect = 1.580e-127
Identity = 190/194 (97.94%), Postives = 192/194 (98.97%), Query Frame = 2

Query:  110 MNFGSKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKRRADSITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST 691
            MNFG+KSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLK RAD ITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVL+DCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST
Sbjct:    1 MNFGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST 194

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BLAST of mRNA_P-littoralis_Contig8.239.1 vs. uniprot
Match: A0A7S2XZV1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZV1_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.820e-65
Identity = 103/194 (53.09%), Postives = 141/194 (72.68%), Query Frame = 2

Query:  110 MNFGSKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTL--GGRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKRRADSITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENE 685
            MNFG + K+LL ELKRS+WLP YNE  V+ +L EI   + EL  T   G R  ++IPD  KV +VVHHQAL+RNKR LL Y   R + +  LRWETGPVVP+ LQ +LS  E E F+ YD +++ + +G+ +DLT D QPPKEL +EVR L DCGEIMT+ G++ L++G+THLLRR D E+L++QG+L+++ ++
Sbjct:    1 MNFGGRGKELLQELKRSEWLPNYNEKTVKDILKEIDLYWQELCATFDNGNRGNNEIPDAAKVGIVVHHQALMRNKRILLAYHMYRLEKLKALRWETGPVVPEHLQGALSGSEREFFSRYDSLVSGYCEGVGIDLTQDQQPPKELFIEVRALEDCGEIMTEQGTINLEKGSTHLLRRCDAENLIKQGMLEQISDD 194

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BLAST of mRNA_P-littoralis_Contig8.239.1 vs. uniprot
Match: A0A835ZIC8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIC8_9STRA)

HSP 1 Score: 216 bits (551), Expect = 4.270e-63
Identity = 101/192 (52.60%), Postives = 141/192 (73.44%), Query Frame = 2

Query:  119 GSKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGG-RTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKRRADSITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST 691
            G+K+K LL EL++ DW+PP+NEDGVR +L EIQAL  E++DTL   R   ++P  VK+ + VHH  L  N+RCLL Y++ RA+  + LRW+TGPVVP  L  +LSA E + FN YDR+LT++ Q   LDLTAD +PP+EL+VEVR L D  ++ TD G V+L +G  +LLR +DVEHLVRQG+L+++++ +T
Sbjct:    5 GTKAKRLLQELRQGDWMPPFNEDGVRAILQEIQALDQEISDTLASSRQGEEMPIQVKIGMAVHHAGLTHNRRCLLAYVRYRAEKASALRWDTGPVVPDSLAPNLSAAEQDFFNKYDRLLTDYQQDFGLDLTADARPPRELYVEVRSLTDDMDVFTDSGLVRLKKGARYLLRHTDVEHLVRQGMLEQIQSAAT 196

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BLAST of mRNA_P-littoralis_Contig8.239.1 vs. uniprot
Match: A0A3R7MJX0_9STRA (Sld5 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A3R7MJX0_9STRA)

HSP 1 Score: 205 bits (522), Expect = 6.370e-59
Identity = 101/192 (52.60%), Postives = 135/192 (70.31%), Query Frame = 2

Query:  110 MNFGSKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTS--DIPDPVKVSLVVHHQALLRNKRCLLTYLKRRADSITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELE 679
            M   +K K+LL EL+RSDWLPPYNED VR V+ E   L++E+   L     +  + P  V   L+V+HQ LLRNKRCL+ YL  R + I  LRWETG ++P  L Q+L  REM+LFN YD++LT++     LDL+ADL+PPK+L+VEVRVL DCGE+MT+ G V L+  + H LRR DVE L+RQGLL++++
Sbjct:    1 MALNAKGKELLRELQRSDWLPPYNEDLVRQVVDESGLLHEEIVRKLNTFKDNFEEQPASVHCGLIVNHQCLLRNKRCLIAYLYHRVEKIKALRWETGTIIPAPLAQNLCQREMQLFNAYDQLLTDYMADFELDLSADLKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQIK 192

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BLAST of mRNA_P-littoralis_Contig8.239.1 vs. uniprot
Match: G4YZC9_PHYSP (Sld5 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YZC9_PHYSP)

HSP 1 Score: 205 bits (521), Expect = 8.090e-59
Identity = 102/190 (53.68%), Postives = 134/190 (70.53%), Query Frame = 2

Query:  110 MNFGSKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKRRADSITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELE 679
            M   +K K+LL EL+RSDWLPPYNED VR V+ E   L++EL   L       +P  V+ +LVV HQ LLRNKRCLL YL  R + I  LRWETG ++P  L Q+L  RE++ FN YD++LT++     LDL+ADL+PPK+L+VEVRVL DCGE+MT+ G V L+  + H LRR DVE L+RQGLL++++
Sbjct:    1 MALNAKGKELLRELQRSDWLPPYNEDLVRQVVEESGLLHEELNRKLE-TFKEGMPKSVECALVVSHQGLLRNKRCLLAYLHHRMEKIKALRWETGTIIPGPLAQNLCQREVQFFNQYDQMLTDYMADFELDLSADLKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQIK 189

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BLAST of mRNA_P-littoralis_Contig8.239.1 vs. uniprot
Match: A0A7S1C9Q6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9Q6_9STRA)

HSP 1 Score: 203 bits (516), Expect = 5.770e-58
Identity = 94/193 (48.70%), Postives = 143/193 (74.09%), Query Frame = 2

Query:  116 FGSKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLG--GRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKRRADSITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENES 688
            +GSK+K LL+EL+RSDWLP YN++ +R V+ EI AL+ EL DTL   G   +D+   V   ++V H+++LRNKRC+L YL+ R + I  +RWETG ++P   ++ +SA+E++  + YD+++T + + + +D+TADL+PPK+L VEV+VL DCGEI TD G V LD+ + H LRRSDVEHL+RQG++++ + E+
Sbjct:    8 YGSKAKALLMELQRSDWLPSYNDEAIRQVVEEINALHAELVDTLEREGFEVADVA--VACGMLVQHESMLRNKRCVLAYLQARLEKIQAMRWETGAMIPPHCKRQMSAKEVDFAHQYDKLVTAYVRDVKIDITADLEPPKDLLVEVQVLKDCGEIWTDSGPVTLDKHSRHFLRRSDVEHLIRQGMVRQTDTEA 198

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BLAST of mRNA_P-littoralis_Contig8.239.1 vs. uniprot
Match: A0A225VV97_9STRA (DNA replication complex GINS protein PSF1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VV97_9STRA)

HSP 1 Score: 199 bits (507), Expect = 9.340e-57
Identity = 98/193 (50.78%), Postives = 135/193 (69.95%), Query Frame = 2

Query:  110 MNFGSKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDI---PDPVKVSLVVHHQALLRNKRCLLTYLKRRADSITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELE 679
            M   +K K+LL EL+RSDWLPPYNED VR V+ E   L++E++  +     +D+   P  V   LVV+HQ LLRNKRCL+ Y+  R + I  LRWETG ++P  L Q+L   E++ FN YD++LT++     LDLTAD++PPK+L+VEVRVL DCGE+MT+ G V L+  + H LRR DVE L+RQGLL++++
Sbjct:    1 MALNAKGKELLRELQRSDWLPPYNEDLVRRVVEESGLLHEEISKKMS--MYADLVNEPASVHCGLVVNHQCLLRNKRCLIAYVHHRMEKIKALRWETGTIIPASLAQNLCQGEVQFFNQYDQLLTDYMADFELDLTADIKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQIK 191

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BLAST of mRNA_P-littoralis_Contig8.239.1 vs. uniprot
Match: K3X6H6_GLOUD (Sld5 domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X6H6_GLOUD)

HSP 1 Score: 198 bits (503), Expect = 3.560e-56
Identity = 95/189 (50.26%), Postives = 135/189 (71.43%), Query Frame = 2

Query:  122 SKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLG--GRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKRRADSITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELEN 682
            +K K+LL EL+RSDWLPPYN++ VR V+ E+ +L++++ + L   G      P  V   L+V HQ LLRNKRCLL YL  R + I  LRWETG ++P  L  +L  RE++ F +YD++LT++     +DL+AD +PPK+L+VEVRVL DCGEIMT++G V L+  +TH LRR DVE L+RQGLL+++++
Sbjct:    5 AKGKELLRELQRSDWLPPYNDELVRQVVEEVGSLHEQIMEKLRVFGDEIEQQPS-VHCGLIVSHQCLLRNKRCLLAYLYERTEKIKNLRWETGTIIPASLAPNLCQREVQFFQSYDQLLTDYMADFEIDLSADTKPPKDLYVEVRVLRDCGEIMTENGLVNLEANSTHFLRRVDVEQLIRQGLLEQIKH 192

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BLAST of mRNA_P-littoralis_Contig8.239.1 vs. uniprot
Match: A0A8K1CID8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CID8_PYTOL)

HSP 1 Score: 196 bits (499), Expect = 1.310e-55
Identity = 96/188 (51.06%), Postives = 134/188 (71.28%), Query Frame = 2

Query:  122 SKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDIPDP---VKVSLVVHHQALLRNKRCLLTYLKRRADSITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQEL 676
            +K K+LL +L+RSDWLPPYN++ VR V+ E+  L++++ + L  RT  D  +    V   L+V HQ LLRNKRC+L YL  R++ I  LRWETG ++P  L  +L+ RE++ FN YD++LT++     LDLTAD +PPK+L+VEVRVL  CGEIMT++G V L+  +TH LRR DVE L+RQG L++L
Sbjct:    5 AKGKELLRDLQRSDWLPPYNDELVRQVVEEVGVLHEQILEKL--RTFGDDIEQHQSVHCGLIVSHQCLLRNKRCVLAYLYERSEKIKNLRWETGTIIPATLAPNLNQREVQFFNAYDQLLTDYMADFELDLTADAKPPKDLYVEVRVLKGCGEIMTENGLVNLEVNSTHFLRRVDVEQLIRQGFLEQL 190

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BLAST of mRNA_P-littoralis_Contig8.239.1 vs. uniprot
Match: A0A2R5GNH7_9STRA (DNA replication complex GINS protein PSF1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNH7_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.640e-55
Identity = 99/192 (51.56%), Postives = 136/192 (70.83%), Query Frame = 2

Query:  116 FGSKSKDLLVELKRSDWLPPYN----EDGVRGVLAEIQALYDELTDTLGGRTTSDIPDPVK-VSLVVHHQALLRNKRCLLTYLKRRADSITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQEL 676
            +G+K ++LL+ELKRS+WLP YN    +DGVR VL EI ALY  +   +    + D+ +P     L+V+H + LRNKRCLL YLK RAD I  LRW+ G  +P++L++ L A E + F+ YD IL+++ + ++LDL AD++PPK L+VEVRVL DCGEI T  G V L + TTH LRRSDVEHL+RQG L+++
Sbjct:    7 YGAKGRELLLELKRSEWLPAYNGKRQDDGVRQVLGEIDALYKRMRSRMA--ESRDMREPFYGCPLMVYHASTLRNKRCLLAYLKYRADLIGNLRWDAGSAIPEDLRRKLCAEEAQYFSAYDNILSDYMREVDLDLAADMEPPKNLYVEVRVLRDCGEIDTVSGPVVLAKDTTHNLRRSDVEHLIRQGALEQV 196

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig8.239.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig8.239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FKW2_ECTSI	1.580e-127	97.94	Sld5 domain-containing protein n=2 Tax=Ectocarpus ...	[more]
A0A7S2XZV1_9STRA	1.820e-65	53.09	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A835ZIC8_9STRA	4.270e-63	52.60	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A3R7MJX0_9STRA	6.370e-59	52.60	Sld5 domain-containing protein n=5 Tax=Phytophthor...	[more]
G4YZC9_PHYSP	8.090e-59	53.68	Sld5 domain-containing protein n=1 Tax=Phytophthor...	[more]
A0A7S1C9Q6_9STRA	5.770e-58	48.70	Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20...	[more]
A0A225VV97_9STRA	9.340e-57	50.78	DNA replication complex GINS protein PSF1 n=1 Tax=...	[more]
K3X6H6_GLOUD	3.560e-56	50.26	Sld5 domain-containing protein n=2 Tax=Pythiaceae ...	[more]
A0A8K1CID8_PYTOL	1.310e-55	51.06	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A2R5GNH7_9STRA	1.640e-55	51.56	DNA replication complex GINS protein PSF1 n=1 Tax=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig8	contig	P-littoralis_Contig8:1006512..1014995 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	2880.D7FKW2
Preferred name	GINS1
PFAMs	Sld5
Model size	1930
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03232,ko:K10732
KEGG Module	M00286
Hectar predicted targeting category	other localisation
GOs	GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000727,GO:0000811,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0003674,GO:0003678,GO:0003774,GO:0003777,GO:0003824,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005856,GO:0005871,GO:0005875,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0008574,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010564,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022607,GO:0022616,GO:0031261,GO:0031298,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0040007,GO:0042623,GO:0043009,GO:0043138,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0045787,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048522,GO:0048589,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051225,GO:0051276,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070925,GO:0071103,GO:0071162,GO:0071704,GO:0071840,GO:0090068,GO:0090304,GO:0090307,GO:0140014,GO:0140097,GO:1900087,GO:1901360,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902292,GO:1902296,GO:1902315,GO:1902319,GO:1902806,GO:1902808,GO:1902850,GO:1902969,GO:1902975,GO:1902983,GO:1903047,GO:1990939,GO:2000045
Exons	5
Evalue	1.66e-135
EggNOG OGs	COG5230@1\|root,KOG3303@2759\|Eukaryota
Ec32 ortholog description	GINS complex
Ec32 ortholog	Ec-17_001580.1
Description	DNA strand elongation involved in nuclear cell cycle DNA replication
Cds size	585
COG category	I
BRITE	ko00000,ko00002,ko03012,ko03032

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig8.239.1	prot_P-littoralis_Contig8.239.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig8 1006621..1013759 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791642.4204013-UTR-P-littoralis_Contig8:1006511..1006620	1680791642.4204013-UTR-P-littoralis_Contig8:1006511..1006620	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig8 1006512..1006620 +
1680791642.508792-UTR-P-littoralis_Contig8:1013759..1014995	1680791642.508792-UTR-P-littoralis_Contig8:1013759..1014995	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig8 1013760..1014995 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791642.4369075-CDS-P-littoralis_Contig8:1006620..1006773	1680791642.4369075-CDS-P-littoralis_Contig8:1006620..1006773	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig8 1006621..1006773 +
1680791642.4516847-CDS-P-littoralis_Contig8:1007769..1007873	1680791642.4516847-CDS-P-littoralis_Contig8:1007769..1007873	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig8 1007770..1007873 +
1680791642.462186-CDS-P-littoralis_Contig8:1013009..1013130	1680791642.462186-CDS-P-littoralis_Contig8:1013009..1013130	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig8 1013010..1013130 +
1680791642.482293-CDS-P-littoralis_Contig8:1013379..1013478	1680791642.482293-CDS-P-littoralis_Contig8:1013379..1013478	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig8 1013380..1013478 +
1680791642.494085-CDS-P-littoralis_Contig8:1013651..1013759	1680791642.494085-CDS-P-littoralis_Contig8:1013651..1013759	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig8 1013652..1013759 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig8:1006512..1014995+
coding sequence from alignment at P-littoralis_Contig8:1006512..1014995+

protein sequence of mRNA_P-littoralis_Contig8.239.1

>prot_P-littoralis_Contig8.239.1 ID=prot_P-littoralis_Contig8.239.1|Name=mRNA_P-littoralis_Contig8.239.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=195bp
MNFGSKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRT
TSDIPDPVKVSLVVHHQALLRNKRCLLTYLKRRADSITQLRWETGPVVPQ
ELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLN
DCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST*

mRNA from alignment at P-littoralis_Contig8:1006512..1014995+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig8.239.1 ID=mRNA_P-littoralis_Contig8.239.1|Name=mRNA_P-littoralis_Contig8.239.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8484bp|location=Sequence derived from alignment at P-littoralis_Contig8:1006512..1014995+ (Pylaiella littoralis U1_48)
GCAAAAATGAAATTGCCCCGCACGTCGTTGAACTCTGTCATCTATCACTC
TCACTCGCTCACTCGCCTCTGCCTTTCTCTCTCTCTCTGACGCACGGTGC
CCGAGAGCCATGAACTTTGGGTCGAAGAGCAAAGATCTCCTTGTGGAGCT
GAAGAGGAGTGACTGGCTGCCTCCTTACAACGAAGATGGTGTTCGCGGCG
TTTTGGCCGAGATTCAGGCTCTTTATGATGAACTCACCGATACTCTCGGG
GGCAGGACAACGGTGGGTGCATGAAAACGGCGTGCATGTGTATGTATGAT
ACCAGGTATGTTACAACATGGTGTCTAAGGCCTGAAATCCTTGTTCTCAT
CTCGGCTGCGGCAGAATTTGTAGACCTATTACCGTCTTGCACCAGAAGCA
AAAGTCCTTATTGGGTGTGTGATTTGTTTACATCCCATCCATTCTGGGCA
CCAGGCTTTTACACTGCTGTTGTACACCTTCGGTATAAAGTGGGTGCATA
GCCGGGGTCAAGTAGAAGTAGAGTTCCGCCCCGTCTCAAAACTACCAGGG
CACCTGAGTCGAGTACCCGGGTCCGGCACCACCCGGTCGGGTCCGGTAGC
TGATTTACTAACCGGGTTTGAAATCGCAATACGGTGCCCCTTCGACAATG
GGGTACCCCCATGAACATCATCACACACGGCGCCCCTTCGATTTTTGGGG
GCATCGTACTTCACTATTCCAGGGGGAAGGGGGCACCGGTCACTTCCCAA
TTAGTCGGGTACTCACGGGTAATGCCCCTCGATTCCCAACGGGTACCCTG
GTAAAAGAAAAAGAGACGGGGCGGAACTCTCAGAAGGAAGGTCACACAGG
ATTTTTTTTTGTTCCTCCAAGCACCTTCTAAAGTACAGCAGTCCTCGCCT
TCAGCTTTTTATCGCGAGAAAGGTTCATCCGTCCCTTACCCACGTTGACT
GTCAAGTCAAATGCATTCGCATTGAACTCGCGACGTATGATATGTATGTC
TGATACTTCGAAGTAGTTGTTTTCCTCTCCCTACAAGTACAAGTATAAGT
TTTGTGAGAAAAATCCGAGATCGTGTGATTCAACAGCGACTTCAAAGGGA
TCCGAACTCACGTCCTGGGTGTCAGTAGGCTTCGAGGTTACCTGTAGAAC
TACGGGGGCGACCGGTTGGTAAACGTCAAGTTCTTAATGTTTACTGCTGC
TATATCGCCGCCCCGATCTCTCTCCCTCTCTGTTGCTCACGAACTTTGTC
CATGGCAGAGTGACATACCAGATCCCGTCAAGGTCAGCCTAGTGGTACAC
CATCAAGCACTCCTCCGCAACAAGCGCTGCCTCCTGACGTATCTCAAGCG
GCGAGCAGATAGGTGCGAGTGATTGGTTGAGATCCAACTTCTTTCTCCAT
ACTCTGCACTCTGCACGGTATATCGAATGAATGTGGCGATGGCGTCAGCC
TGGAAAAAAATAAAACATCCAACAAGTTTGGGTGCCCGAAAGAAAAAACG
CTACAGCAGGAAGGCGGTTTCTCATCAGGTTGAAAATGCCGATCGATTTT
CCCCGTATATCCGATCGAGCACTTTACTTGCGATTTTCGATCCGCTGTTC
TCAAGGTGATCGTTATTTCCTACCATGTTTTAGGACTGCCGGCAAGAAGC
AGCACATCAGTATAGTGAGCAGCAGCGATTTTTTTTTTTTCTCCTGTGAG
ACCAGTTTACACTTTAGCTTATAATTCTCAAATGAACGAGGCCACAACAA
TGACAAAGCCATCCTCCGTGAACTGTGTGTATGGTTCTTCTCATGCGATG
ATCGTTCGAGCCCTCAGGGTGTGGGTAGAACTCGCCACGAATGACTGTTA
ATGGTGATATGTGTCAAAAATACAAAAATACGCGAAAACTAAATACAGCA
AAGAGCTGCCGTTGTTCCGCACAGTAGAGGAGGTATTTTTCGCCTCTGGC
GCCGCTTTGCTTTCTCATCGGCCACTCTCGAACGGATGCAGCCACAGCAA
TGCCAAAGGCATCAGCCGTAAGCTGTGTGCATGGTTCTTGTCGTCTGGTG
ATCATTGAGGTCAGGGTTACGTATGCATGTCCGCCAAAAACAGTTTGGGT
GTCTCGAACCACATGTCGAAAATTCAACAAACACCTACCGGTCGGTGCTG
CTGTACAACAGAACAGCTTTCTCTCTGGTCGTTAACAACATGTGATTGTC
ACGAGCAACTTGTTTGCGAGCCTACCGATAACTCGCGGGCCCAAACACTC
AATACACGAAAGGGATCGCACCAAAGCTCGCGGCAGATGCCCTTTTCACC
GCTGCGGCTGTATTCTTCCGAGATAAGTGGTGGGTGAAAGACCGGTGCCA
GGGGAAAAGGGCCTGCTGGGCCTCGCCAGCAAATATTATGAGGGCTACAG
AAATAAACACCTGTGACACCCAGCACGTGCTACATGGACAGCAGCCAAGC
AGCAGCAGCAGCAGCAGCAGCAATACCTCCCCTCTCCTGCTGTTGTTGTT
ATCCTTGCTTGGGTTGGTGCCTTATGCTTGGTATGTGTACATATATACCG
GTATGTGTGTGCGTATGTGTCTGTGTGCGATGATGTTGGCAACTCATCCT
TGTCATACCACATAAAGAGAGAAGACCCAAGTCACCCACATCACTTACCC
CACATGGAGAGAGAAGACCCAAGCACAATATTTCCGATCGCAAACATCGA
TCGGTTGACCGCGTCGAAATCCCTCAGATTTCCGACAGGATTCTGATCGA
AAATGACTTGTCGGGAATCTCAGATCGGAGATGGTTCATTCACAAACCAG
GCACATATCGTGTTAGAAGGAAAATGAAAAAAAAAGAAAATAAATGGACT
ATGATCACCCACACAGTCAAATCAGATAGGGTACCGTTGGGGTACCACCT
GTGGTGGCCAAAGTACAAAACAAAATACAGAAAACAAGAGCTTCGAAAGA
AAAAACAAAAATTGGAGAAAGTACAAAAACCCAAGACAAACCTTAACCAT
ATGCTTCGAAGTACTTCGTATACCGAGCCAGAGCCCAGAGCCATCTGAGT
GAGCAGGTCTGTTACATTTGAGGTGTTCGTCATGGGAACGTTCATGAGTG
TGCCTCTTGCTTCTGTGAGAGCCTTCAAAAGAGCATTTGAAGGCGGTTAA
ATGCTGACGCACACGACGAGGAGAGTAGGAAAGCGGGCCGGGGGCCATTT
GTGTGCGGGTTTCGACTTGCTTCGGCGGGCTTTCTCTGCCCGGAAAGCGA
TCCCGCGAAAGAGCCAGTCCCGGCGACTTCAGGCGTCAAGAACACGGGCC
ACCGATGCCGGGCGACCCCCGGACCTGCACGGTAATGTACCGACGGGTCT
CCTGCGTGCCTCCAGAAAAAAATGGGAGCAAAGAACCGCTGCAGGCGGAG
AAATCTAGGCCCAAGCATTAAAAATGATGAAATGATACACATACAATACT
ATGTACACACAATACATACATCCATGTACGTATACAGGAAGCACCACAAG
GTAATTTTTTTGCGCTGGGATCAGTTTGCATTGTCGCTCATAACTCTCCA
ACGAATGAAGGCAGAGCGATGACAAACCAATCCTCCGTGAGCTGTGTAGA
TGGGCCTTCTCAAATGGTAATCGTTTGAGTCATCAAGACGTCGGTAGGCT
AGAAAAAATGTGTTGATGATGTAAAAGACATGATGCATGCATTCGAAAAA
GACAGAAAGAGCTGCCGCTGCTTGCTCCGCTCAGACACGCCTTGTTCGCC
TTGGTGAGCACTGGTTTGCTTTTTCGTTCACCGCTTTCGAACAAATGGGG
CCACAGCAATGACAAAGGCATCTTCAGTGAGCTGTGTGTATGATCCTTGT
GTGGCGATCGCTTGGGTTAGGATTACATCTTTACGTTCGCAACAAAAGGT
TGCTCATGGCCAACATGTGTGAAAAAAATCAAATTGAAGAAAGACTGTCG
GCCAATCTGCTGCATGAGGACACATTATTGGCATAGCTCTTGCTCTATTT
TTTACAACACATCACAGAACGAGCAAGCTCATTTTGCGGACATGGCGGTG
TAATCTTACCCAAACGATCACCACACGAGGAGGACCATAGTCGCAGCTCA
CTGGAAATAGGCTTATCATCGCTGTGGTTTTATTCAATGAGGAGTAACAT
GCGAGAGTGCAAACTGGTCTCAAAACAAAAAAGCTACCCTCCTGCTGCTG
CTCGCTGCTGCTGCGGTTGGTTTTGGTTGCCGCTGATGAATGGAATGGAA
GGAATCATGACGGCAAACACACAAAGACAGAGGGCGGGCACAATCATGGG
CAGCAGCAGCAGCAGTTACAGCGCAGCAAGTAGCAGGACTCCACTGCTGC
TGCTCTGTTTGCTTTGGTTTGGATCGGTGGTTTGGCCTATCCTTTAGTTC
GTGGCACATATAGAGAGACACCATCCCGAAACGTTTTTTTCAAGTATTAC
CGATCGTATTTTCCGACACGGTCCAGCGCTCGGAAATCGTAGGGTTTTCC
GACAGAATCCCGATCAAAGTCCGATCGGAGAGTATTGTCCGGAAACTGGT
AGTTTATGAACGGATTTCCTGAGCTCACAAGAAACCGCCTGATCCGTAGT
TTTTTAGGCTTGGTACAGCCCCACCGAGGAAACCCCCCTGCTTTTAGGCA
AAAAAAAGGGGTACAGCAGTGCTCTTCGTGCCAGTGTGAGGTGCTGTATG
GCGGCTGTATCAATCCTCGGAAACAAACTGCGTCAGCGAGACGGACACGG
AGTAAAGGTAGTGCGCCCAACCTATTTTTTGTTTGTTTGGGCGCGGGAAT
GATATTTGGGGCGTGGAAAAGTACGACTTCAAGGTGCACCCATTTTTGTT
GACGAATCCGGGGGATACACCTCCTTGTCTGCCAAAGATCATATTCTACC
CCGTTTCTTTCATCTCAAACTCCCTTTTTGTTCAAAGCCCACCGTTTTTA
GCCCTCTTTGTTCACTTAAGCCTCCCATGCGCGGAACCCTCTGCAGCGGA
ATCAACAATTGGCTGCGTATCCAGGCAAGTATGTATGGTGCCGCTGCGTA
CCTCCATATTTGTTGTGCGTACCATACTACACGTGTCATGTATTCCGGAT
GCTGCTGCGTATCTACGATTGTGACCCGCGCTAAAGTATCTATCGCATCG
CGGAAGATGTTCATGTAGTATAGGCTGCTCCGAACCCACGTATTGTATGA
CTATGACAACAACAGGGCATGAAGCAAGTTTGTTGGGCGGCCCGCCCTTT
TTTGCGACTTTTTCTCGAATGACACGCGGGAAACGACACACATCACCACA
CAGGCGAGTCAGCCTCAGGATCACACATAAAACATTTCGCCGCAGTTTGT
GCGCAGGATGCCTCTGGCGGTCCCTCCTCTCCTATACGAGTCAATCTTCT
CACGGTCAACGACTCTTTCGCCATGGTGAAAGATCTTCGGAATGCCGCCG
AACGCGTGCTGCTTTCGCAAGGCCGTACCACTTGGAACATTTTTTTTTTG
TACTGCGGGTATTTTTTTATCCGATGGTGGGGACGCTCATGTCGCTGCTG
AAAAGGCCGATTCACAAGAAGGGGTACAACAGTTACCAAGAAGCAACATC
CCGGCGCGGCGTCACGAAAAGCACAAACCCTTTTTTGTGTCAAAAGTAGG
GGGTATACCCCTTGATGTCGATGGCCCAAGCTCAGAAAAGCGTTTTGCTT
TTCTCGGAGCCCGTGTTATCAGCTGCCACGCTGCCACACTGGCAGGATTG
CGTCTTGTGACACTTGTGCTGTCTACAGCAGCATGTCAAGCTCATCGGGT
ATCTGATACATGCACGCGCTCCCCCGTGCTACTGATGGATCTCTCGGCTA
GATACGCCTGTCTGTGTGTGTACTTCGAGAGCACCGTCGTAGGAATACGA
GAGACACTTGAACGCTGCCGCAATACCTCTCTCGGCAGCCGCTCTTCTCA
CACTCGATCCAACTAATTGTGTGAATTTATGTGCTCGACGCAGCAAAAGC
AGTTCTCTCCCGCTCTGCTGCCCCTGTTTTGCTGACTCTCTCAAAGCAAA
TTTTTGTCTGTCTTTTGCATCAGTTTTTGCGCTCTCTCTGCCCCGGCATC
TCTCTTGAACCGAATACCTCGCGCTCTCACCAGCCAGGATACCTGGGATG
GGGGCCCTACCCCCGCCCACTGCGATTCAATTATTTTTATATCGCGTCGG
ATAGCCCTTCCGTCCGTTCGTTGAATTGCGCGCCCTCCACGTACACGTGT
CAGTAGTTTTCTGCTGCGACTACATCGTTAGGACTGACATATTTTGACAC
TGGACACGGGAAGTAGATTACAATATCGAGGCAATTTGCAGAGCAACAGC
GCTCACTTCGAGTGATGACAAAGAAAGCACACATGGCGTTAGGTCCTCGC
TCAATTTACTCCTTTCTCGTATCAATGCTGGCCCTTCGAACTGTTAGGTC
CGAGTTGACTTAAACTCCTTCGCTTTTGTGCGTTGAAACTCTGCACAGCA
TCACTCAGTTACGGTGGGAAACAGGACCCGTCGTTCCGCAAGAGCTGCAG
CAGAGCTTGAGTGCCAGAGAGATGGAGTTGTTCAACACGTACGATCGAAT
TCTTACGAATTTCACACAGGTATGGCGGCCACATGGTAGGTTTGTACCTG
ACAAGCCTGCATAAACGTGCATTGTACGTTACCAACGTTACACATGGTTC
GTGTATGCGGCTGTAGTATCGACAGGAGGCTTCCGGTACGCCGCCAAATG
TGTCGTCACATCTACAGGTTTCATAGTCGCTGCTCCCTGGCCAGCCTGCG
TCCGCGTCGGTAATACCTCGACCCGAGGAGCCTCAGTGACCGGTATACCG
TGATTGTTTTTCTCGCAGGGTTTAAATTTGGATCTCACCGCAGATCTTCA
ACCACCAAAGGAGCTGCACGTTGAGGTCAGGGTCTTGAACGACTGCGGGG
AAATCATGACAGATCACGTGAGACTGAAATTCCTAGGTAGATTTTGTCAA
TCTCGCACGTGCGGCATGCCCGTTTTGTGAGCCGCGCCTGCTCCATAGTA
CCATATCGCAAAGATATACAAAACCTGGCCGTGCAATTAGTATTGCAACG
TCCCCCACCTACTCGCGGTACTATTGTGATTCGCGCTCAGGGATCTGTAA
AGCTTGACCGGGGAACGACTCACCTATTGCGGAGATCTGACGTGGAGCAC
TTGGTACGTCAAGGCCTTCTCCAAGAGCTAGAGAACGAATCAACCTGACG
CGGTAAATTGACAGAGGCGTCGGTTCTCGATGGAGTGTTGGGGGAAAATG
CTGCGAACCCTGTTAGCTAGCTAGGTATTGGAGGTGTTCGCGACAGTCAG
TGGTACGTTGAAACTGCTTTAGTGGTGGGTTTCGGCGGAGAATGTCAACA
TGCGCGCACGTGGGAAATGTGCACGCTAGAATGCACCCGTGCGCACCATG
TTCCGATGGGACCGAACGACGGCTCGGCTCCACACGCTATCACACAGCAT
GGGATTGCGCTGCCCGTTGCTGTTTCAGAACACGCATGTCATCAGCTACA
TACACGTTTGCGAGCTATTTTGCATCTAACACTTATGGGCAGCCAAATGA
AACCGTTATTTCATTCCAACCCATTCAAAATATCTAGTCGGACCACTTGG
AGGGTGCACGACTTATCTGATTGTCTCCTCTGTTACCTATTCCCTCTCGC
CGCCCCCATTATGTATTTGTATGCTCTACGGCTTTGAGTCAAGCGGAGCT
CTGGTGGGGCGTTCTTGCGCCAATCATACTGCAAGATTAACATTCGTTCA
CAAGAGTCAATGACAGGAAAGCTACACTCAAGAAGTCTTGCTTAATAACC
GACGGTTTCAAAACGGGTCCGCTTGAAGGAGTCTCCCAGACTTTTCGCAA
TATTTATGATTCCATACCTACGAAGTTGTTTTGTCTTTGATATTTCCGCG
CACATGAGCATACGGTATTTGCATGAGAAATAGAGTAGATGCCAGCTCGG
AGTACTTTCGTACGTATAAACGAATATAAACGAGTTGGAGACAACGCTGG
TCCCATGCTGAGGCTTGATCATCTTCCAGAAAAAAATACCTACACACACT
CATGGGGACAGTAGCGGGTTTCTTGTCGCTACACGGATTGTGCGGAACTG
GTGACAACCCTTGTGGGAAAACGACAAAGTTGATTCCGTGATGATGTGTA
GGTGGGAATCCCATTATTGCCGGCCTCTGTTGCCTTTCTGAGTGGTATTG
CCGTTGTTGGCATTGTGTATTTGCACAGATACCGATGAAATAAGTGGGTG
TGGTGCGCCGAGTGAAATGTTGAGTGTAGTGGGTCTATGGGTGTGCAAAA
ACGGCGGCTTGTTGTGTGTGTACTCGTCCCATCGTATCTAGACGCCAGTC
TTTACCTTCGTGGGCGAATCATCCGAGATCACATAGGAGGAATGTCAACA
CAGGAGTTTTTTTTCATCTACACCTTCCTTCTGC

Coding sequence (CDS) from alignment at P-littoralis_Contig8:1006512..1014995+

>mRNA_P-littoralis_Contig8.239.1 ID=mRNA_P-littoralis_Contig8.239.1|Name=mRNA_P-littoralis_Contig8.239.1|organism=Pylaiella littoralis U1_48|type=CDS|length=585bp|location=Sequence derived from alignment at P-littoralis_Contig8:1006512..1014995+ (Pylaiella littoralis U1_48)
ATGAACTTTGGGTCGAAGAGCAAAGATCTCCTTGTGGAGCTGAAGAGGAG
TGACTGGCTGCCTCCTTACAACGAAGATGGTGTTCGCGGCGTTTTGGCCG
AGATTCAGGCTCTTTATGATGAACTCACCGATACTCTCGGGGGCAGGACA
ACGAGTGACATACCAGATCCCGTCAAGGTCAGCCTAGTGGTACACCATCA
AGCACTCCTCCGCAACAAGCGCTGCCTCCTGACGTATCTCAAGCGGCGAG
CAGATAGCATCACTCAGTTACGGTGGGAAACAGGACCCGTCGTTCCGCAA
GAGCTGCAGCAGAGCTTGAGTGCCAGAGAGATGGAGTTGTTCAACACGTA
CGATCGAATTCTTACGAATTTCACACAGGGTTTAAATTTGGATCTCACCG
CAGATCTTCAACCACCAAAGGAGCTGCACGTTGAGGTCAGGGTCTTGAAC
GACTGCGGGGAAATCATGACAGATCACGGATCTGTAAAGCTTGACCGGGG
AACGACTCACCTATTGCGGAGATCTGACGTGGAGCACTTGGTACGTCAAG
GCCTTCTCCAAGAGCTAGAGAACGAATCAACCTGA