mRNA_P-littoralis_Contig8.219.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.219.1
Unique NamemRNA_P-littoralis_Contig8.219.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig8.219.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.480e-6
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    7 IASRLVGRLHCSHGVEKPEPLPVIKNRDKRRKAARDHPGTCGVHQAELTAAVSMESV 177
            +AS+ VG  +CSH V  PEPL  + +  KR+KAA DHPG CGV+ A + AAV  + V
Sbjct:  117 VASK-VGARYCSH-VSAPEPLEDMSHA-KRKKAAADHPGLCGVYHAHIIAAVRTQDV 170
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BLAST of mRNA_P-littoralis_Contig8.219.1 vs. uniprot
Match: A0A6H5KH61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH61_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 1.780e-5
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   22 VGRLHCSHGVEKPEPLPVIKNRDKRRKAARDHPGTCGVHQAELTAAVSMESV 177
            VG  +CSH +  PEPL  + +  KR+KAA DHPG CGV+ A + AAV  + V
Sbjct:   52 VGARYCSH-LSAPEPLEDMSHA-KRKKAAADHPGLCGVYHAHIIAAVRTQDV 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH50_9PHAE5.480e-650.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH61_9PHAE1.780e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:957434..957622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size189
Hectar predicted targeting categoryother localisation
Exons1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791642.0380661-CDS-P-littoralis_Contig8:957433..9576221680791642.0380661-CDS-P-littoralis_Contig8:957433..957622Pylaiella littoralis U1_48CDSP-littoralis_Contig8 957434..957622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.219.1prot_P-littoralis_Contig8.219.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 957434..957622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.219.1

>prot_P-littoralis_Contig8.219.1 ID=prot_P-littoralis_Contig8.219.1|Name=mRNA_P-littoralis_Contig8.219.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
QSIASRLVGRLHCSHGVEKPEPLPVIKNRDKRRKAARDHPGTCGVHQAEL
TAAVSMESVKATA
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mRNA from alignment at P-littoralis_Contig8:957434..957622-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.219.1 ID=mRNA_P-littoralis_Contig8.219.1|Name=mRNA_P-littoralis_Contig8.219.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig8:957434..957622- (Pylaiella littoralis U1_48)
CAATCAATCGCAAGCCGCCTTGTGGGCCGGCTGCACTGCTCTCACGGCGT
GGAGAAGCCCGAGCCTCTCCCTGTCATCAAAAACAGGGATAAGCGACGCA
AGGCCGCGAGGGACCACCCGGGCACCTGCGGCGTGCACCAAGCGGAGCTC
ACAGCTGCTGTCTCGATGGAGTCTGTGAAGGCAACAGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:957434..957622-

>mRNA_P-littoralis_Contig8.219.1 ID=mRNA_P-littoralis_Contig8.219.1|Name=mRNA_P-littoralis_Contig8.219.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig8:957434..957622- (Pylaiella littoralis U1_48)
CAATCAATCGCAAGCCGCCTTGTGGGCCGGCTGCACTGCTCTCACGGCGT
GGAGAAGCCCGAGCCTCTCCCTGTCATCAAAAACAGGGATAAGCGACGCA
AGGCCGCGAGGGACCACCCGGGCACCTGCGGCGTGCACCAAGCGGAGCTC
ACAGCTGCTGTCTCGATGGAGTCTGTGAAGGCAACAGCC
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