mRNA_P-littoralis_Contig8.209.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.209.1
Unique NamemRNA_P-littoralis_Contig8.209.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:908872..909485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size444
Hectar predicted targeting categoryother localisation
Exons2
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791641.89945-UTR-P-littoralis_Contig8:908871..9088771680791641.89945-UTR-P-littoralis_Contig8:908871..908877Pylaiella littoralis U1_48UTRP-littoralis_Contig8 908872..908877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791641.9118283-CDS-P-littoralis_Contig8:908877..9091821680791641.9118283-CDS-P-littoralis_Contig8:908877..909182Pylaiella littoralis U1_48CDSP-littoralis_Contig8 908878..909182 +
1680791641.924967-CDS-P-littoralis_Contig8:909352..9094851680791641.924967-CDS-P-littoralis_Contig8:909352..909485Pylaiella littoralis U1_48CDSP-littoralis_Contig8 909353..909485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.209.1prot_P-littoralis_Contig8.209.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 908878..909485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.209.1

>prot_P-littoralis_Contig8.209.1 ID=prot_P-littoralis_Contig8.209.1|Name=mRNA_P-littoralis_Contig8.209.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
MESTGLRVEDHPLVLHYVSTRGGRPASANILHQRPTADMVLIAHCDTGGS
QSFTCNDKVTSEHPFGAPAGTVAIPKSSMIQLPAPGRNQAVPTTALSYAV
NRFTSVGDTVCCLPIETSLEISGVALRTGRKIEVFGRSDAGRETFR
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mRNA from alignment at P-littoralis_Contig8:908872..909485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.209.1 ID=mRNA_P-littoralis_Contig8.209.1|Name=mRNA_P-littoralis_Contig8.209.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=614bp|location=Sequence derived from alignment at P-littoralis_Contig8:908872..909485+ (Pylaiella littoralis U1_48)
GACGCCATGGAAAGCACCGGGCTGAGAGTGGAGGACCACCCTCTCGTTCT
CCACTACGTTTCCACGCGAGGAGGCCGACCCGCCAGCGCAAATATTTTGC
ACCAGCGGCCCACTGCTGATATGGTACTCATCGCTCACTGCGATACAGGG
GGAAGCCAGTCCTTCACATGCAACGACAAGGTGACCTCCGAACATCCTTT
CGGAGCTCCGGCGGGAACGGTGGCCATTCCGAAATCATCCATGATTCAAC
TTCCAGCTCCGGGCAGGAACCAAGCCGTACCGACTACAGCTTTGAGTTAC
GCCGTGAACAGGTGCGCATGACGTTATCTATCAATGCCCCTCGGAACATG
TGGGTGGCTTCGTCCATATTGTTGTGTTTATCAGCACAGAACAGCAGCGT
CTCATCATAGCCAGATTTCGTGGAGGCTATTTTCGCTGGTTGTAGCGATC
TGAACCCAGCCGCTTGTATCGTCGAATTTAGGTTCACCTCTGTTGGAGAC
ACGGTGTGCTGCTTGCCGATCGAAACATCGTTAGAGATATCTGGAGTCGC
CTTGAGGACAGGCAGAAAGATCGAGGTGTTCGGGCGAAGTGATGCAGGGC
GCGAGACTTTTCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:908872..909485+

>mRNA_P-littoralis_Contig8.209.1 ID=mRNA_P-littoralis_Contig8.209.1|Name=mRNA_P-littoralis_Contig8.209.1|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig8:908872..909485+ (Pylaiella littoralis U1_48)
ATGGAAAGCACCGGGCTGAGAGTGGAGGACCACCCTCTCGTTCTCCACTA
CGTTTCCACGCGAGGAGGCCGACCCGCCAGCGCAAATATTTTGCACCAGC
GGCCCACTGCTGATATGGTACTCATCGCTCACTGCGATACAGGGGGAAGC
CAGTCCTTCACATGCAACGACAAGGTGACCTCCGAACATCCTTTCGGAGC
TCCGGCGGGAACGGTGGCCATTCCGAAATCATCCATGATTCAACTTCCAG
CTCCGGGCAGGAACCAAGCCGTACCGACTACAGCTTTGAGTTACGCCGTG
AACAGGTTCACCTCTGTTGGAGACACGGTGTGCTGCTTGCCGATCGAAAC
ATCGTTAGAGATATCTGGAGTCGCCTTGAGGACAGGCAGAAAGATCGAGG
TGTTCGGGCGAAGTGATGCAGGGCGCGAGACTTTTCGA
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