mRNA_P-littoralis_Contig10.100.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.100.1
Unique NamemRNA_P-littoralis_Contig10.100.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig10.100.1 vs. uniprot
Match: A0A6H5JIW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.300e-24
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   97 MNALHNVPLKWRLLIGGQVLITAGLVVHRFETVNSMNVERRGAVGEGRFAAPG-VEQPGHARRKDDSSPTRG 309
            MNALHNVPLKWRLLIGGQVLITAGL+VHR ET+N+M  ER+ A GEGRFA P  +E+P  ARR+ + S T G
Sbjct:    1 MNALHNVPLKWRLLIGGQVLITAGLMVHRMETINTMKEERKTAGGEGRFAPPAPLEEPDRARRRSEGSTTEG 72
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIW5_9PHAE2.300e-2469.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:432266..433750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size693
Hectar predicted targeting categorysignal peptide
Exons3
Cds size219
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789331.6319404-UTR-P-littoralis_Contig10:432265..4326431680789331.6319404-UTR-P-littoralis_Contig10:432265..432643Pylaiella littoralis U1_48UTRP-littoralis_Contig10 432266..432643 -
1680789331.6699035-UTR-P-littoralis_Contig10:433654..4337501680789331.6699035-UTR-P-littoralis_Contig10:433654..433750Pylaiella littoralis U1_48UTRP-littoralis_Contig10 433655..433750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789331.640103-CDS-P-littoralis_Contig10:432643..4327921680789331.640103-CDS-P-littoralis_Contig10:432643..432792Pylaiella littoralis U1_48CDSP-littoralis_Contig10 432644..432792 -
1680789331.6483192-CDS-P-littoralis_Contig10:433212..4332361680789331.6483192-CDS-P-littoralis_Contig10:433212..433236Pylaiella littoralis U1_48CDSP-littoralis_Contig10 433213..433236 -
1680789331.6577501-CDS-P-littoralis_Contig10:433608..4336541680789331.6577501-CDS-P-littoralis_Contig10:433608..433654Pylaiella littoralis U1_48CDSP-littoralis_Contig10 433609..433654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.100.1prot_P-littoralis_Contig10.100.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 432644..433654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.100.1

>prot_P-littoralis_Contig10.100.1 ID=prot_P-littoralis_Contig10.100.1|Name=mRNA_P-littoralis_Contig10.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=73bp
MNALHNVPLKWRLLIGGQVLITAGLVVHRFETVNSMNVERRGAVGEGRFA
APGVEQPGHARRKDDSSPTRGD*
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mRNA from alignment at P-littoralis_Contig10:432266..433750-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.100.1 ID=mRNA_P-littoralis_Contig10.100.1|Name=mRNA_P-littoralis_Contig10.100.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1485bp|location=Sequence derived from alignment at P-littoralis_Contig10:432266..433750- (Pylaiella littoralis U1_48)
CGCAGCCAGCGGCAGTCGTACCCACTACTACTGTACCCAGTAGAGCAGAG
GCTACAATCCACCCGGGTACAACGGCAGTAGGGATATCTGTGGGCCATGA
ATGCTTTGCACAACGTACCGCTCAAGTGGAGGCTGTTGATAGGTAAGAAG
TACCAAATGGAATATCTGAAGGTTGCATCCGTCCCCGATGGCACCAACAG
AAACACATCATTATTACTCCGGAGCCACATAGCAGATGACAGATGCAGGA
TGAGCAGCGTTATAGGTACACACATCATCGCGACAGTTTCAGAGGAGCTG
TAGCAGTACTCATCGATACCTTCTATCCACAAGCTGCTCAGCAGCCCTAT
GATTCATATTATGAACATGTTCGTGCGTGGTAGCACCCCCCACCCCCTTT
CTCCCCCAAACAACCACAGCAGCAGTCGTCTTTCTTCTCTCCCGGTCTTT
CGTGTGTTTGTCGTGCACTCGTTTTCATGTGCGTCCGGACCGTAATATCA
CCGACGGGGCAAAGGCGGGCAAGTCCTGATAACCGCCGGTGAGACCCTAA
CGAATATGTGTGCGGCAAGAAGTACGATACACTTCTAAGCAGCACAGTAT
ACAAACCAAGAATGCACGCACACATGGGTGTCACCACGCTGCTGTGTATC
GCGCACGGCGGTGCGTACCTCCGGTGTGCTCGTGTAACGACTGCTCCAAC
GCGCGCCCCCGCCGTCGTGCAGTTCCTCCAGCACTTGTCACGTCCCGCCT
CTCACTACAAGTTTCAGCAGCGATGCTGTTGAGGGCAGGCAGCGTCTTAA
ACGCGTGAAAAACAGGCGCCCGCTTGTTCCCCTTTCGCTCTCCCTCATTT
TTCGGCACACGCCTTCCCCGTCCTGCACCCGTTGATTAGCCATACCGCAT
CTATATCACGTTGTATCCTGCGCCGCCGTCTGCCCAATCGTCCACGACGT
ACCACCAGGTCTTGTGGTGCACCGGTTTGAAACGGTCAACTCTATGAACG
TCGAGAGAAGGGGTGCAGTAGGGGAGGGGCGGTTCGCGGCCCCGGGCGTG
GAACAGCCTGGTCATGCGCGGAGAAAAGACGACAGTTCTCCAACTAGAGG
CGACTAGAGACTTCTGCAGTAGACATCCACAAGTAAAGTGTTAGGTTTAG
GAGGACCGCACTCCTGCGGCTGCTGAATGAAAGCAGCTCAAAACGTAGCG
ACTGCCCTCGTACTTGGTGTATCGAGTACAGTAAAAAAAGCAGTTAGTGG
GGCACAACACTGCGAGAGAAAATGCACAGGGAATCCTTAAATGGAGAATA
CTTTCCCACACGCGAGCAAACGCGAGCGAATACTGTTTTTCAGAACGTGC
TTTGGATTCTGTCTAGGAGAGATACAACATGCCAAGAACGGGGTGGGACC
CACTGAGCATTTGTCGAAACAACGGGCTCGCTCCATGACAGCGACCACGT
TCTACGATAAACTGTGTGAAACTGCTGTGCTTCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig10:432266..433750-

>mRNA_P-littoralis_Contig10.100.1 ID=mRNA_P-littoralis_Contig10.100.1|Name=mRNA_P-littoralis_Contig10.100.1|organism=Pylaiella littoralis U1_48|type=CDS|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig10:432266..433750- (Pylaiella littoralis U1_48)
ATGAATGCTTTGCACAACGTACCGCTCAAGTGGAGGCTGTTGATAGGCGG
GCAAGTCCTGATAACCGCCGGTCTTGTGGTGCACCGGTTTGAAACGGTCA
ACTCTATGAACGTCGAGAGAAGGGGTGCAGTAGGGGAGGGGCGGTTCGCG
GCCCCGGGCGTGGAACAGCCTGGTCATGCGCGGAGAAAAGACGACAGTTC
TCCAACTAGAGGCGACTAG
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