mRNA_P-littoralis_Contig8.196.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.196.1
Unique NamemRNA_P-littoralis_Contig8.196.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig8.196.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 2.050e-35
Identity = 68/100 (68.00%), Postives = 81/100 (81.00%), Query Frame = 3 
Query:  366 DCLASHGIFAVGTCRKDRTAGAVPFWESLDRRLLERGDMHFARSGNIAFVQWLDSKDVILCSTIHIAQPSEGSEEPEAEPDSEPKAGDDGDDHFKPIPYR 665
            +CLASH IFAVGTCR +RT GAVP+ +SLDRR +ERG+MHFAR+GN+AFVQWLDSK++ILCS+IHIAQP     EP+ E DS     D GDDHF P+PYR
Sbjct:   78 ECLASHDIFAVGTCRSNRTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKE-DS-----DGGDDHFAPLPYR 171
[Close]
BLAST of mRNA_P-littoralis_Contig8.196.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 8.930e-35
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 3 
Query:  366 DCLASHGIFAVGTCRKDRTAGAVPFWESLDRRLLERGDMHFARSGNIAFVQWLDSKDVILCSTIHIAQPSEGSEEPEAEPDSEPKAGDDGDDHFKPIPYR 665
            +CLASH IFAVGTCR +RT GAVP+ +SLDRR +ERG+MHFAR+GN+AFVQWLDSK++ILCS+IHIAQP     EP+ E D      D GDDHF P+PYR
Sbjct:  853 ECLASHDIFAVGTCRSNRTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDD------DGGDDHFAPLPYR 946
[Close]
BLAST of mRNA_P-littoralis_Contig8.196.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.670e-34
Identity = 69/106 (65.09%), Postives = 84/106 (79.25%), Query Frame = 3 
Query:  348 KALAVCDCLASHGIFAVGTCRKDRTAGAVPFWESLDRRLLERGDMHFARSGNIAFVQWLDSKDVILCSTIHIAQPSEGSEEPEAEPDSEPKAGDDGDDHFKPIPYR 665
            K+  + +CLASH IFAVGTCR +RT GAVP+ +SLDRR +ERG+MHFAR+GN+AFVQWLDSK++ILCS+IHIAQP     EP+ E DS     D GDDHF P+PYR
Sbjct:  901 KSPTLFECLASHDIFAVGTCRSNRTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKE-DS-----DGGDDHFAPLPYR 1000
[Close]
BLAST of mRNA_P-littoralis_Contig8.196.1 vs. uniprot
Match: A0A6H5KIY7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY7_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.400e-33
Identity = 66/99 (66.67%), Postives = 76/99 (76.77%), Query Frame = 3 
Query:  366 DCLASHGIFAVGTCRKDRTAGAVPFWESLDRRLLERGDMHFARSGNIAFVQWLDSKDVILCSTIHIAQPSEGSEEPEAEPDSEPKAGDDGDDHFKPIPY 662
            +CLASH IFAVGT R  RTAGA+PF +SLDR  ++RGDMHFAR+GNIAFVQ LDSKD+ILCSTIH+AQP     EP+ E D      D GDDHF P+PY
Sbjct:   12 ECLASHDIFAVGTYRVKRTAGAIPFLQSLDRIPVKRGDMHFARAGNIAFVQRLDSKDIILCSTIHLAQPRAAIGEPKKEDD------DGGDDHFAPLPY 104
[Close]
BLAST of mRNA_P-littoralis_Contig8.196.1 vs. uniprot
Match: A0A6H5KNL0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNL0_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.110e-25
Identity = 58/98 (59.18%), Postives = 68/98 (69.39%), Query Frame = 3 
Query:  366 DCLASHGIFAVGTCRKDRTAGAVPFWESLDRRLLERGDMHFARSGNIAFVQWLDSKDVILCSTIHIAQPSEGSEEPEAEPDSEPKAGDDGDDHFKPIP 659
            +CLASH IFAVGTCR DRTA A  + ESL R +  RGDM+F RSG +A VQW DSKD+ L STIH+AQP++G EE          AG  G DHFKP+P
Sbjct:  237 ECLASHDIFAVGTCRADRTASADVYLESLGRTIPNRGDMNFCRSGQVACVQWADSKDIFLISTIHVAQPAKGKEE----------AG--GIDHFKPLP 322
[Close]
BLAST of mRNA_P-littoralis_Contig8.196.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.900e-25
Identity = 59/98 (60.20%), Postives = 69/98 (70.41%), Query Frame = 3 
Query:  366 DCLASHGIFAVGTCRKDRTAGAVPFWESLDRRLLERGDMHFARSGNIAFVQWLDSKDVILCSTIHIAQPSEGSEEPEAEPDSEPKAGDDGDDHFKPIP 659
            +CLASH IFAVGTCR DRTAGA  + ESL R +  RGDM+F RSG +A VQW DSKD+ L STIH+AQP++G EE          AG  G DHFKP+P
Sbjct:  505 ECLASHDIFAVGTCRADRTAGADAYLESLGRTIPNRGDMNFCRSGQVACVQWADSKDIFLISTIHVAQPAKGKEE----------AG--GIDHFKPLP 590
[Close]
BLAST of mRNA_P-littoralis_Contig8.196.1 vs. uniprot
Match: A0A6H5KN67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN67_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.330e-25
Identity = 56/98 (57.14%), Postives = 66/98 (67.35%), Query Frame = 3 
Query:  366 DCLASHGIFAVGTCRKDRTAGAVPFWESLDRRLLERGDMHFARSGNIAFVQWLDSKDVILCSTIHIAQPSEGSEEPEAEPDSEPKAGDDGDDHFKPIP 659
            +CLASH IFAVGT R DRTAGA  + ESL R +  RGDM+F RS  +A VQW DSKD+ L STIH+A P++G EE          AG  G DHFKP+P
Sbjct:   12 ECLASHDIFAVGTYRADRTAGADAYLESLGRTIPNRGDMNFCRSRQVACVQWADSKDIFLISTIHVAYPAKGKEE----------AG--GIDHFKPLP 97
[Close]
BLAST of mRNA_P-littoralis_Contig8.196.1 vs. uniprot
Match: A0A6H5K5H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H6_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.730e-25
Identity = 57/100 (57.00%), Postives = 66/100 (66.00%), Query Frame = 3 
Query:  366 DCLASHGIFAVGTCRKDRTAGAVPFWESLDRRLLERGDMHFARSGNIAFVQWLDSKDVILCSTIHIAQPSEGSEEPEAEPDSEPKAGDDGDDHFKPIPYR 665
            +CLASH IFAVGTC  DRTAGAVP   SL  +L +RG M F RSG +AF+QW DSKDV+LCSTIHIAQP EG E               G +H KP+P +
Sbjct:  271 ECLASHDIFAVGTCPSDRTAGAVPSLTSLGHKLAQRGAMQFRRSGEVAFMQWKDSKDVLLCSTIHIAQPGEGEE-----------LVGGGINHVKPLPLQ 359
[Close]
BLAST of mRNA_P-littoralis_Contig8.196.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 8.910e-25
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 3 
Query:  366 DCLASHGIFAVGTCRKDRTAGAVPFWESLDRRLLERGDMHFARSGNIAFVQWLDSKDVILCSTIHIAQPSEGSEEPEAEPDSEPKAGDDGDDHFKPIP 659
            +CLASH IFAVGTCR DRTAGA  + ESL R +  RGDM+F RSG +A VQW DS D+ L STIH+AQP +G EE          AG  G DHFKP+P
Sbjct:  222 ECLASHDIFAVGTCRADRTAGADAYLESLGRTIPNRGDMNFCRSGQVACVQWADSNDIFLISTIHVAQPVKGKEE----------AG--GIDHFKPLP 307
[Close]
BLAST of mRNA_P-littoralis_Contig8.196.1 vs. uniprot
Match: A0A6H5JXZ2_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.480e-22
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 3 
Query:  351 ALAVCDCLASHGIFAVGTCRKDRTAGAVPFWESLDRRLLERGDMHFARSGNIAFVQWLDSKDVILCSTIHIAQPSEGSEE 590
            +L + +CLASH IFAVGTCR DRTAGA  + E+L R +  RGDM+F RS  +A VQW DSKD+ L STIH+AQP++G EE
Sbjct:  180 SLTLFECLASHDIFAVGTCRADRTAGADAYLETLGRTIPNRGDMNFCRSWQVACVQWTDSKDIFLISTIHVAQPAKGKEE 259
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5KCK7_9PHAE2.050e-3568.00DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5JJP9_9PHAE8.930e-3567.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW40_9PHAE1.670e-3465.09HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5KIY7_9PHAE1.400e-3366.67DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KNL0_9PHAE1.110e-2559.18DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5LEE0_9PHAE1.900e-2560.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN67_9PHAE2.330e-2557.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5H6_9PHAE2.730e-2557.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCC7_9PHAE8.910e-2559.18DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JXZ2_9PHAE2.480e-2261.25DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:826621..827871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size668
Hectar predicted targeting categoryother localisation
Exons3
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791641.3553703-CDS-P-littoralis_Contig8:826620..8268091680791641.3553703-CDS-P-littoralis_Contig8:826620..826809Pylaiella littoralis U1_48CDSP-littoralis_Contig8 826621..826809 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791641.3662877-UTR-P-littoralis_Contig8:826809..8269201680791641.3662877-UTR-P-littoralis_Contig8:826809..826920Pylaiella littoralis U1_48UTRP-littoralis_Contig8 826810..826920 -
1680791641.378987-UTR-P-littoralis_Contig8:827130..8271561680791641.378987-UTR-P-littoralis_Contig8:827130..827156Pylaiella littoralis U1_48UTRP-littoralis_Contig8 827131..827156 -
1680791641.391045-UTR-P-littoralis_Contig8:827529..8278711680791641.391045-UTR-P-littoralis_Contig8:827529..827871Pylaiella littoralis U1_48UTRP-littoralis_Contig8 827530..827871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.196.1prot_P-littoralis_Contig8.196.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 826621..826809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.196.1

>prot_P-littoralis_Contig8.196.1 ID=prot_P-littoralis_Contig8.196.1|Name=mRNA_P-littoralis_Contig8.196.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
MHFARSGNIAFVQWLDSKDVILCSTIHIAQPSEGSEEPEAEPDSEPKAGD
DGDDHFKPIPYR*
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mRNA from alignment at P-littoralis_Contig8:826621..827871-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.196.1 ID=mRNA_P-littoralis_Contig8.196.1|Name=mRNA_P-littoralis_Contig8.196.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1251bp|location=Sequence derived from alignment at P-littoralis_Contig8:826621..827871- (Pylaiella littoralis U1_48)
CAGAGAGCTCGAACAGATCTTGAACAGCGCGTGGTCGAAACACATGGACG
TCAACCAGTGGCTGTCCTACGACGAGCAGATGATCAAGACGGTGTCGACC
TTTGCGCGATTACTCCTGAGGCACATGCCCAAGAAACCGATCACCCACGG
TAAGCATTTCGTACGTTGTGGCGGCGTGAGTCACTGAAACTGGACTTTTC
TCGTCAGCGGGCTGAACTTGCGTCGTGAAGAAGCGTGGTGGACATGTATT
AGTTGAAAACGGAGCTATTGAAAGTCCACAAGAGGAGGGGTGATCACTTC
ATATTTTTGGGAGAAGGGATGGACAAGCTTTGAACCCCTCAGGTGTGTGC
CAATAGTGAGTGCGATTTACATGCACACACGCACATCCGTCAACATCCCT
CTCACCCCAATCCACGACAGTACAAAAGCACCACATCTCCCGGTTTCGAA
GGATGTTATATTATTTCCGGTTTTGCAACGAGATATCCCCGGGGGAGTTT
CAAATGCACCTTTTTTTTTCGCCGAATATTTTGCGCGTGGGGCCGGCTGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGAAAGGGGTCGGCGTTGATA
CTTGCTGTCCTATGGTTGCACACAGCTGATGAAGACCGACCAGTAACCAG
CTCGACTTATTTTTTCTGTTGAAATACGCCATCCTACTTGTCTGTTTGTC
GTGTTGACACTACAGGTATCAAAGCATTAGCGGTGTGCGATGTTACGGGG
TATTGTTTCGTGAGCAGCGTCGACGGTGGTTTCAACGGGGACCCGAAGAT
TAGGGACTGGTTCAACTGCCCGCTAGGGCGCACCACTCGGCACGTTCTGT
ATGTTCTTCTTGACGCCTGCAAGGAGTTCAAAGACAAGATCGACGGGTCA
GGCGTCCACGTCGCGATGGATAACTTCTTCACAAGCCCGACGCTCTTCGA
GTGCCTTGCGAGCCACGGCATATTCGCAGTGGGAACATGCCGGAAGGACC
GAACCGCTGGTGCCGTCCCGTTCTGGGAGAGCCTAGATCGCCGCCTCCTC
GAGCGGGGTGACATGCATTTTGCCCGCTCCGGCAACATCGCGTTCGTGCA
GTGGCTCGACTCCAAAGACGTCATCCTCTGCAGCACCATCCACATCGCCC
AACCGAGTGAAGGTAGCGAAGAGCCCGAGGCGGAGCCCGATTCGGAGCCC
AAGGCGGGCGACGACGGCGACGACCACTTCAAACCTATACCGTACAGGTG
A
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:826621..827871-

>mRNA_P-littoralis_Contig8.196.1 ID=mRNA_P-littoralis_Contig8.196.1|Name=mRNA_P-littoralis_Contig8.196.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig8:826621..827871- (Pylaiella littoralis U1_48)
ATGCATTTTGCCCGCTCCGGCAACATCGCGTTCGTGCAGTGGCTCGACTC
CAAAGACGTCATCCTCTGCAGCACCATCCACATCGCCCAACCGAGTGAAG
GTAGCGAAGAGCCCGAGGCGGAGCCCGATTCGGAGCCCAAGGCGGGCGAC
GACGGCGACGACCACTTCAAACCTATACCGTACAGGTGA
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