mRNA_P-littoralis_Contig8.149.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.149.1
Unique NamemRNA_P-littoralis_Contig8.149.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig8.149.1 vs. uniprot
Match: D8LBH8_ECTSI (Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH8_ECTSI)

HSP 1 Score: 484 bits (1246), Expect = 4.220e-164
Identity = 249/281 (88.61%), Postives = 263/281 (93.59%), Query Frame = 2 
Query:  296 MARGGMMMIATAACVGVSQAFVTPMTTVSAGATSAATARKSSLTMAAENAYHKKDFWIAPSILSANMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAVFNEPRTEDNYRQTIEKMRAELADATIA 1138
            MAR G  +    ACVG SQAFV P  TVS GA++  T+  SSLTMAAENAYHKKDFWIAPSILSA+MAKLG+EVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVT PIDVHLMVSPVDRIVGDFA+AGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDK+DIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSA+FN PRTE+NY++TI+KMR+ELADATIA
Sbjct:    1 MARAGAFVAF--ACVGASQAFVVPTATVS-GASTRHTS--SSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATIA 276
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BLAST of mRNA_P-littoralis_Contig8.149.1 vs. uniprot
Match: A0A835YRZ4_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ4_9STRA)

HSP 1 Score: 393 bits (1010), Expect = 1.190e-128
Identity = 206/272 (75.74%), Postives = 228/272 (83.82%), Query Frame = 2 
Query:  320 IATAACVGVSQAFVTPMTTVSAGATSAATARKSSLTMAAENAYHKKDFWIAPSILSANMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAVFNEPRTEDNYRQTIEKMRAELADATI 1135
            +A  A VGV+ AF          A ++A +R +S    A NA+H+KDF IAPSILSA+MAKLGEEVDNAM+AGAD+VHFDVMDNHYVPNLTIGPLVCK LR+HGV   IDVHLMVSPVDRIVGDFA+AGAS+ITFHPEASPHVDRTL LIKS GCK+GLVFNPATPLD AKYVLDK+DIILLMSVNPGFGGQ+FIP+TLDKLREAR MIDESG+DIRLE+DGG    NIKEIAEAGADMFVAGSAVF  PRT + Y  TI K+RAELA A I
Sbjct:    7 VAVLATVGVACAF----------APASAPSRPTSSLRMANNAWHRKDFQIAPSILSADMAKLGEEVDNAMAAGADVVHFDVMDNHYVPNLTIGPLVCKALRNHGVKNDIDVHLMVSPVDRIVGDFAEAGASYITFHPEASPHVDRTLQLIKSTGCKSGLVFNPATPLDFAKYVLDKVDIILLMSVNPGFGGQAFIPATLDKLREARAMIDESGFDIRLEIDGGVTQNNIKEIAEAGADMFVAGSAVFKNPRTVEAYTDTITKLRAELAAAQI 268
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BLAST of mRNA_P-littoralis_Contig8.149.1 vs. uniprot
Match: W7TD18_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD18_9STRA)

HSP 1 Score: 382 bits (981), Expect = 1.890e-124
Identity = 186/224 (83.04%), Postives = 204/224 (91.07%), Query Frame = 2 
Query:  452 KKDFWIAPSILSANMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAVFNEPRTEDNYRQTIEKMRAELA 1123
            KKDFWIAPSILSA+ AKLG+EVDN ++AGADIVHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVDRI+ DFADAGASFITFHPEA+ H+DRTL LIKS GCK+GLVFNPATPL  A++VLDK+DIILLMSVNPGFGGQSFIP TL KL+EARKMIDESGYDIRLEVDGG GVANIK+IAEAGAD FVAGSA+   PRT+D Y+ TI+ MRAELA
Sbjct:   40 KKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELA 263
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BLAST of mRNA_P-littoralis_Contig8.149.1 vs. uniprot
Match: F0YLQ5_AURAN (Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLQ5_AURAN)

HSP 1 Score: 375 bits (963), Expect = 1.320e-121
Identity = 189/245 (77.14%), Postives = 211/245 (86.12%), Query Frame = 2 
Query:  401 ATARKSSLTMAAENAYHKKDFWIAPSILSANMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAVFNEPRTEDNYRQTIEKMRAELADATI 1135
            A A KSS+ M  E     KDF IAPSILSA+ A+LGEEV N++SAGAD+VHFDVMDNHYVPNLTIGP+VC  LR HGVT PIDVHLMVSPVDRIVGDFADAGAS+ITFHPEASPHVDRTL LI+  GCKAGLVFNPATPLD  KYV+DK+DIILLMSVNPGFGGQSFIP+TLDK REARK+ID SGYDIRLE+DGG   ANIKE+AEAG DMFVAGSA+F +PRTE++Y+ TI+ MR ELA A +
Sbjct:   27 APAAKSSMRM--ELIEPDKDFLIAPSILSADFARLGEEVVNSLSAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVGDFADAGASYITFHPEASPHVDRTLQLIRGAGCKAGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQSFIPATLDKAREARKLIDASGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEDYKVTIDAMRDELAAAKV 269
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BLAST of mRNA_P-littoralis_Contig8.149.1 vs. uniprot
Match: A0A6S8QFJ5_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8QFJ5_9STRA)

HSP 1 Score: 373 bits (957), Expect = 1.000e-120
Identity = 181/228 (79.39%), Postives = 204/228 (89.47%), Query Frame = 2 
Query:  452 KKDFWIAPSILSANMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAVFNEPRTEDNYRQTIEKMRAELADATI 1135
            +KDF IAPSILSA+ AKLG EVD +++AGAD+VHFDVMDNHYVPNLTIGP+VC  LR HGVT PIDVHLMVSPVDRIV DFADAGAS+ITFHPEASPHVDRTL LI+S GCK+GLVFNPATPLD  KYV+DK+DIILLMSVNPGFGGQ+FIP+TLDK REARKMIDESGYDIRLE+DGG   ANIKE+AEAG DMFVAGSA+F +PRTE+ Y++TI+ MR ELA A +
Sbjct:   41 EKDFLIAPSILSADFAKLGAEVDASLAAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVQDFADAGASYITFHPEASPHVDRTLQLIRSTGCKSGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQAFIPATLDKAREARKMIDESGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEAYKKTIDAMRDELAAAKV 268
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BLAST of mRNA_P-littoralis_Contig8.149.1 vs. uniprot
Match: A0A7S2UWQ6_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ6_9STRA)

HSP 1 Score: 368 bits (944), Expect = 9.710e-119
Identity = 181/237 (76.37%), Postives = 207/237 (87.34%), Query Frame = 2 
Query:  413 KSSLTMAAENAYHKKDFWIAPSILSANMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAVFNEPRTEDNYRQTIEKMRAELA 1123
            KSSL M A+  +  KD+ IAPSILSAN AKLGEEVDN ++AGAD+VHFDVMDNHYVPNLTIGP+VCK L+DHGVT PIDVHLMV PVDRI+GDFADAGA +ITFHPEAS H+DR+LGLIKS GCK+GLVFNPAT LD+AKYVLDK+DIILLMSVNPGFGGQSFIP   DK+++ARKMIDESGYDI+LE+DGG  V NIK+IAEAG DMFVAGSA+  EPR +D Y +TI+ MR +LA
Sbjct:   35 KSSLKMGAD--FPDKDYLIAPSILSANFAKLGEEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALKDHGVTAPIDVHLMVDPVDRIIGDFADAGADYITFHPEASGHIDRSLGLIKSLGCKSGLVFNPATSLDYAKYVLDKVDIILLMSVNPGFGGQSFIP-IYDKIKQARKMIDESGYDIKLEIDGGVNVNNIKDIAEAGVDMFVAGSAILKEPRNKDAYAETIKTMREQLA 268
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BLAST of mRNA_P-littoralis_Contig8.149.1 vs. uniprot
Match: A0A7S0M6B2_9CRYP (Ribulose-phosphate 3-epimerase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M6B2_9CRYP)

HSP 1 Score: 361 bits (927), Expect = 1.600e-116
Identity = 174/228 (76.32%), Postives = 197/228 (86.40%), Query Frame = 2 
Query:  455 KDFWIAPSILSANMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAVFNEPRTEDNYRQTIEKMRAELADATIA 1138
            KDF IAPSILSAN AKLGEEVDN ++AGAD+VHFDVMDNHYVPNLTIGP VCK LRDHGVT PIDVHLMVSPVDRI+GDF DAGAS+ITFHPEA+ HVDR+L L+++ GCK+GLVFNP+T LD+ KYV+DK+DIILLMSVNPGFGGQ FIP+ LDK REARKMIDESG+DIRLE+DGG  V NIK++AEAG D FVAGSA+   PRT+D YR TI +MR  LA A  A
Sbjct:   25 KDFLIAPSILSANFAKLGEEVDNMLAAGADVVHFDVMDNHYVPNLTIGPGVCKALRDHGVTAPIDVHLMVSPVDRIIGDFVDAGASYITFHPEATNHVDRSLSLVRAAGCKSGLVFNPSTSLDYLKYVMDKVDIILLMSVNPGFGGQKFIPNVLDKAREARKMIDESGFDIRLEIDGGVTVDNIKDVAEAGVDFFVAGSAILKAPRTKDAYRSTINQMRTNLAAAKRA 252
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BLAST of mRNA_P-littoralis_Contig8.149.1 vs. uniprot
Match: L1JR28_GUITC (Ribulose-phosphate 3-epimerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JR28_GUITC)

HSP 1 Score: 362 bits (928), Expect = 2.290e-116
Identity = 171/228 (75.00%), Postives = 198/228 (86.84%), Query Frame = 2 
Query:  455 KDFWIAPSILSANMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAVFNEPRTEDNYRQTIEKMRAELADATIA 1138
            KD+ IAPSILSA+ AKLG+EVDN ++AGAD+VHFDVMDNHYVPNLTIGP+VCK LR+HGVT PIDVHLMV PVDRI+GDF DAGAS+ITFHPEAS H+DRTL +I+  GCKAGLV NPAT LD+ KYV+DKIDIILLMSVNPGFGGQ FIPS L+K +EARK+ID SGYDIRLE+DGG  V NIK++AE G DMFVAGSA+  EPRT+D Y+ TI+KMR +LA A +A
Sbjct:   49 KDYLIAPSILSADFAKLGQEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALRNHGVTAPIDVHLMVQPVDRIIGDFIDAGASYITFHPEASNHIDRTLAMIRDGGCKAGLVLNPATSLDYCKYVMDKIDIILLMSVNPGFGGQKFIPSVLEKAKEARKLIDASGYDIRLEIDGGVTVDNIKQVAECGVDMFVAGSAILKEPRTQDAYKTTIDKMRQQLASAKVA 276
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BLAST of mRNA_P-littoralis_Contig8.149.1 vs. uniprot
Match: A0A7S0YLA0_9CRYP (Ribulose-phosphate 3-epimerase n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0YLA0_9CRYP)

HSP 1 Score: 358 bits (918), Expect = 1.470e-114
Identity = 173/225 (76.89%), Postives = 195/225 (86.67%), Query Frame = 2 
Query:  461 FWIAPSILSANMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAVFNEPRTEDNYRQTIEKMRAELADATI 1135
            + IAPSILSA+ AKLGEEVDN ++AGAD+VHFDVMDNHYVPNLTIGP VCK LRDHGVT PIDVHLMV PVDRI+GDF DAGAS+ITFHPEAS H+DR+L LI+  GCK+GLVF PAT LD+AKYVLDK+DIILLMSVNPGFGGQ FI  TLDK REARKMIDESGYDIRLE+DGG G ANIK++AEAG DMFVAGSA+   PRT+D Y +TI+ +R ELA A +
Sbjct:   72 YLIAPSILSADFAKLGEEVDNMLAAGADVVHFDVMDNHYVPNLTIGPGVCKALRDHGVTAPIDVHLMVDPVDRIIGDFIDAGASYITFHPEASNHIDRSLQLIRDGGCKSGLVFTPATSLDYAKYVLDKVDIILLMSVNPGFGGQKFIEGTLDKAREARKMIDESGYDIRLEIDGGVGEANIKKVAEAGVDMFVAGSAILKAPRTQDAYAKTIKTLRGELAKAEV 296
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BLAST of mRNA_P-littoralis_Contig8.149.1 vs. uniprot
Match: A0A7S0LBR0_9EUKA (Ribulose-phosphate 3-epimerase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LBR0_9EUKA)

HSP 1 Score: 356 bits (914), Expect = 1.600e-114
Identity = 179/252 (71.03%), Postives = 211/252 (83.73%), Query Frame = 2 
Query:  380 SAGATSAATARKSSLTMAAENAYHKKDFWIAPSILSANMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAVFNEPRTEDNYRQTIEKMRAELADATI 1135
            S G   AA +R S++ MA+E       + IAPSILSA+ AKLGEEVD  ++AGAD VHFDVMDNHYVPNLTIGPLVCK LR+HG+T PIDVHLMVSPVDRI+GDFADAGAS+ITFHPEA+ H+DR+L L+++ GCK+GLVFNPAT LD  KYV+DK+DI+LLMSVNPGFGGQSFIP+TLDKLREAR MIDESG+DI LE+DGG G ANI E+A AGADMFVAGSA+FN P    +Y++TI+KMRAELA   +
Sbjct:   13 SLGVRPAAVSRGSTVRMASE-------YLIAPSILSADFAKLGEEVDTVLAAGADTVHFDVMDNHYVPNLTIGPLVCKALRNHGITAPIDVHLMVSPVDRIIGDFADAGASYITFHPEATTHIDRSLQLVRAAGCKSGLVFNPATSLDCLKYVMDKVDIVLLMSVNPGFGGQSFIPATLDKLREARAMIDESGFDISLEIDGGVGPANIAEVAAAGADMFVAGSAIFNTP----DYKETIDKMRAELATVPV 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBH8_ECTSI4.220e-16488.61Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus ... [more]
A0A835YRZ4_9STRA1.190e-12875.74Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema m... [more]
W7TD18_9STRA1.890e-12483.04Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsida... [more]
F0YLQ5_AURAN1.320e-12177.14Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus... [more]
A0A6S8QFJ5_9STRA1.000e-12079.39Ribulose-phosphate 3-epimerase n=1 Tax=Pelagomonas... [more]
A0A7S2UWQ6_9STRA9.710e-11976.37Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa ... [more]
A0A7S0M6B2_9CRYP1.600e-11676.32Ribulose-phosphate 3-epimerase n=1 Tax=Cryptomonas... [more]
L1JR28_GUITC2.290e-11675.00Ribulose-phosphate 3-epimerase n=1 Tax=Guillardia ... [more]
A0A7S0YLA0_9CRYP1.470e-11476.89Ribulose-phosphate 3-epimerase n=2 Tax=Hemiselmis ... [more]
A0A7S0LBR0_9EUKA1.600e-11471.03Ribulose-phosphate 3-epimerase n=1 Tax=Coccolithus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:643636..651234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009041362.1
PFAMsRibul_P_3_epim
Model size2336
Max annot lvl2759|Eukaryota
KEGG rclassRC00540
KEGG koko:K01783
KEGG ReactionR01529
KEGG Pathwayko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007
Hectar predicted targeting categorychloroplast
Exons3
Evalue1.52e-129
EggNOG OGsCOG0036@1|root,KOG3111@2759|Eukaryota
Ec32 ortholog descriptionribulose-phosphate 3-epimerase
Ec32 orthologEc-27_003930.1
EC5.1.3.1
Descriptionribulose-phosphate 3-epimerase activity
Cds size846
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791638.9215941-UTR-P-littoralis_Contig8:643635..6439301680791638.9215941-UTR-P-littoralis_Contig8:643635..643930Pylaiella littoralis U1_48UTRP-littoralis_Contig8 643636..643930 +
1680791638.9736445-UTR-P-littoralis_Contig8:650039..6512341680791638.9736445-UTR-P-littoralis_Contig8:650039..651234Pylaiella littoralis U1_48UTRP-littoralis_Contig8 650040..651234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791638.9357243-CDS-P-littoralis_Contig8:643930..6444261680791638.9357243-CDS-P-littoralis_Contig8:643930..644426Pylaiella littoralis U1_48CDSP-littoralis_Contig8 643931..644426 +
1680791638.9458928-CDS-P-littoralis_Contig8:648249..6484341680791638.9458928-CDS-P-littoralis_Contig8:648249..648434Pylaiella littoralis U1_48CDSP-littoralis_Contig8 648250..648434 +
1680791638.9620798-CDS-P-littoralis_Contig8:649874..6500391680791638.9620798-CDS-P-littoralis_Contig8:649874..650039Pylaiella littoralis U1_48CDSP-littoralis_Contig8 649875..650039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.149.1prot_P-littoralis_Contig8.149.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 643931..650039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.149.1

>prot_P-littoralis_Contig8.149.1 ID=prot_P-littoralis_Contig8.149.1|Name=mRNA_P-littoralis_Contig8.149.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=282bp
MARGGMMMIATAACVGVSQAFVTPMTTVSAGATSAATARKSSLTMAAENA
YHKKDFWIAPSILSANMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTI
GPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPH
VDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQ
SFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVA
GSAVFNEPRTEDNYRQTIEKMRAELADATIA*
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mRNA from alignment at P-littoralis_Contig8:643636..651234+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.149.1 ID=mRNA_P-littoralis_Contig8.149.1|Name=mRNA_P-littoralis_Contig8.149.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7599bp|location=Sequence derived from alignment at P-littoralis_Contig8:643636..651234+ (Pylaiella littoralis U1_48)
AAAGAGAGAAGTGGGGTTGTGGCAGCCAGAGGCGAGAAGGACGGTGGTCA
CGAGACACACCAGATACGGCAACGGCGAACGTGGCGGAGAAGTACACACC
ACACACACGGCACCCTGCACACGAGACACGAGACACGACGCGGGGTTCCG
TGCATGTTCTAAAATCTCCCATGCGAGGGTGTACCTGTACGGAGCCGACT
GAATAAATCGCGAGTCCACGACACACGCGCATGTAATTAAAACGAATACA
AAAACGCAACGTCCTAGCACTCATCATCAACCACCAGCAACGACTATGGC
TAGGGGAGGAATGATGATGATTGCCACTGCGGCGTGCGTCGGCGTGAGCC
AGGCGTTCGTCACCCCGATGACAACTGTCTCGGCGGGCGCCACGTCGGCG
GCAACTGCACGAAAGTCCTCGTTGACGATGGCAGCGGAGAACGCATACCA
CAAGAAGGACTTCTGGATCGCCCCTTCCATCCTCTCGGCCAACATGGCCA
AGCTGGGGGAGGAGGTGGACAACGCGATGTCTGCGGGCGCGGATATCGTC
CACTTCGATGTGATGGACAACCACTACGTGCCGAACCTCACGATCGGCCC
CCTCGTGTGCAAGGGGCTGAGGGACCACGGCGTAACCAAACCCATCGACG
TTCACCTCATGGTGTCGCCCGTGGACCGCATCGTCGGCGACTTTGCTGAC
GCCGGCGCGTCCTTCATCACGTTCCACCCCGAGGCCTCGCCCCACGTGGA
CCGTACTTTGGGTCTCATCAAGTCCTACGGCTGCAAGGCTGGTAAGTTTG
GCATGCGTCCGTCACTGTGCAATATTTACTTCTCGCCCAAACCCTCGATA
GCTACACCTTCCACCGAAACACATGTACAACGCCTTCTTTATCCTTGTGT
CAGACTACAAACAAAGTACGTATTCACCCTTCGCCGTTTTCATATTTACG
ACGTGGGCTGTTCACAATCATCGGCTTTGTGTGCAAGATGTCCAACGAAT
GTTATTTAACTTCTAGACTCAATCCGCTACTGCTGTCGTACGAGTATACG
GCCGGTGTTTCGTTGTTACAATGCAGCAGCAGATCGCCATCCGAGCGAGC
GGACGGAGAAAAGGAGAGTGAATCCCAAGGGAGCTTCCCTATCCAAAGGC
ACCAACATGTCAAACCTGGACACTCCCTTGTTAAAAACAAAAAAAATGAT
ACCTCTTACTCGTAGTATTCACGTATTAGTCCTATAACATTACACTTCGA
AGTACTACACTTCAGTTTAGACATTCATTCAGCAATTGTATGGATGTAAA
GGAGTTTTTCGAAAATGAAAAAACATCCTGCTGCGTTTTAGGTGTGACTC
CTATCTTAACACTTTTCGGTGCGTGTCCTTGGGGTCAGCCGGGGCCGCAT
AGGAAGGTCACAGACGAGCTTTTTATTTTTTATTTTTTTTGTAATAATAC
GACCTGTCTTTGATTTTTAAGACGTGACAAGTTCAGCAATCCCTCCCTTC
TGTCTACTCACGAACAAATCGCTCTCCTTCACTGCTGAAAAGTTGCCGTC
AAAAGCTCTCAGAGAGAATCGAGCCTGCAGGCTTCCTGCTAGCAGGCGAA
TGAGGGAACCACCCGACCACCGGGGCGACCGGATATGCAGCAGTAAATTA
GGTACACAGACTTATACAAACCAGACACTCGCCCACCCACCTTGGAACCG
CTCTCTCCTCTTCTCCCTGTGTATCCGGCCTCCTTATTGTTTTCTGTTCA
ATTCCCCCTTCTCAACACGATATGATACCAGAATCACAGGACACAGCAAC
ACTCACACGAAGAGTACTTCGTAGTTGTATTTACTGGACGTGTCCGTCCA
ACGCCGCAGCCCCGATCCCTATGCTTGTATAGACACCGCTTCACCACGGA
CGGGCGGAAGCAGGGCGGTACATTTGAATTTGAAGTGGGGGGGATTCCCA
TCCCAGTTAAGAAGCAATGCAACCGAACGAGTGAAGTCTCCGGTGCGAGG
ACGATATCCATGTAGGAACAGCAACCGACTTTCATCCGGCGGCCTGCGTC
CTTCATTCACCGCGTGTCCCTTACCGTACTTGTGCCGCGTTGCTTTCGAA
TGTACTCCTTTGTTGGATGCTGTCGGCCGCTTGCCTTTCCTGACGAGGAC
CTTGCCTAATCAGCAATGATTGTTCACTGAACCTCACGCGACTAGCGGCC
CGTAGACCTACCCAAACATGCAGAAGAACATTTTACCGGACTTTTTGCGA
TTTCTCTTTTCGATGAGGAGGTGAACATGCTTGACACGCTCTTGGATACG
CGAGCAGGTTTCCACTCTTCCTGAAGTAGCTTCAAACCCAGAGCACGTGC
GTCCGACCGGAACCCCAACCGTATTTCCCATCGTAAAAAGAGGTTGGTGC
TCGGCTGCTGTGCGTTCGCAAGGTATTCCTGGTACATGGTTATGACCGTG
ACATCGCTCGAGGAAAAACGGTTTCCTTCTGCCCGTGATGGTAGATCTGC
AGGCGCACCCCATATCATACGACGCACTCGATTCTGAATCTCCTGTCATG
GAAGCTCTATTTCGATGTGAAGAGTCCGCGAAAAATATGACACTCACCAA
AGCAACGCCGCAGCTGTGCCCGTATGATGAGCGACACGCACACACCAGTG
TGAAGGAGACATAGACTAAGGAGTACCCGGGAGAAGGCCATGTTGAGAAC
GCTCAGACCACTCCATGCTTGCGCCGTCTGTTGTGGTGATGACTGTGTGG
ATTATATATATAGAGAAAGTTGCAAGCGAGCAAGAATTGGCGTGGTCCGT
TATGAACAACGAAAAACAACACAACAGCCGATATGCGACCGCAGCACATA
TCCTTTAATATCAGCAGCAGTTGGATCACTGTCTCCGTGAGGGCGAAGTT
CCGCGCATAAATACATGCTGGAACTGACTGATGTTGTTGTTGTTGTTGAT
TCTTACCGCTTAGCTAGCCACCATAGTCCAGCCCGTGGCCACAAATAGTA
AAAGGAAGGGTATACAGGAGACCGAAGAAGCCACAGCAGTGCCCATCATC
TTTCTATTTGTGTACGTTGTGTGCGTTTACTGGACACACACAAACTACTA
CACCATCATCGTGCTCAATCTCCACCCCGTCCAACTACCAAATAATCTTT
CATCGCTGCAGACTTCAACAGTTGCTGTCTGGAGTGCTGCCTGCTGCGAC
GCAAATAGACCCAGTAGTCAGGTACAGCAGAGAAAACGCACAATGTTGAT
GTCTGGAGTGCTGTCAGAATGACGAGGCCTGCAGGCAGTAGTGACGTAAA
AAAACACCAGCAAGGCCAACGAAAGCTACCGCACGTTCGACAATCCCCGA
TCTTTCCCCGAATTGTTCACAAAGGGCACAAGACAATCACACACCATCAA
TATCGTAAAGGAGTCGTTCCACAATAAAAGGCACAACGAAGGCACAAAGG
CCGCGCTCTTCACGAAAGACAGGCGGTACCATCTACAGTGCCCCTATAGC
TGTAAAAATCCCAAAAAAGAAAGAAAACTTGCGAAGGTCGTGATGAATGA
TGTCGCTGAGGGTGGTCTCGATGCTGTCCTTGCGCTAGTGGTGATGTGAC
CCAAGCATGGCAACCTCCAGCTCCCTCGTCATGTGAGTTCCATTGTCCTA
GGCCACCCCCAGCACCGATCGCCTATCTCGCACTCGTCCACATGCTCTCG
TTGTTGTTTCTTTCCAGTCGGTTCCCCCTCAGCTCCTCTTGACACTTGAG
GTACCAGTCTGGTGAAAAAAAATGTTCACGCTCAGGGTGAGTTCGACCAT
GCTCTTCCCTGTTCGTCGCCGCTCGTCTCCCTCCGTCTATGGCTTCGAAT
CCGGCTACTGGACGGCATTATCCCTCTGTGCATCCTAGACCGTGGCGCCT
TTTCGCCTTTAGTGTCGCCTGCCTCCGCGCACAAATGATTGTGATGTATG
ATGTGTTGGTGTAAGTGACTGAAGTACGAGCGATTAAGTCTACACAACAT
TTATATTCCCACACACAGGAGCAGCAGCAGCAGCGGCCGGCAATATCACC
CCCGTGGAGCACATACTTAATAAACATGGTTACCAAAGTCTTCGCCACAT
GAGCCTGGGTTCAGGGGTACAAATTGCAGTTCACACTCTGTGCAATCAGC
CGATAAAACGCCACCAGAGGCGAGTATGCTGAGCGAAGTTGTACTATGCT
CGAGTAATCTCCATCTGTGCCTGTCCGTCGTGTAGAGTAGTGCATCGTTA
TTTAAATGTCTTGAATTCAAATCTACCTTAGCTTTACATGCACGCCAAAC
GCGTACGACCCAACGGTAGCCCTTATCGATAACTCCACTCTTCGTTTTGC
AGCATCAGTCCTGAACATGGCGGGGAGGCAAGCTGCACCTAGCTGTCAAA
TGAAGCTCTCCGTATGTTTCTTCGTGCAGACGGGATCTGTTGTTCTGTTC
CCGCCCTGTGTGGAGGTGACCCATTTGTGTGTGTTTTTTTTTTTGAAAAA
CAAAATTACGTCCCGCAGACCTTCACTCCCGCCCTGCTGAAGTCACAATC
CAGTAAGGCTTTCACTCCCACCCCTCCGCCCCCCAACTCCTTCTCTTTTT
TGAATACAACGCAGGACTTGTGTTCAACCCCGCCACTCCGCTTGACCACG
CCAAGTACGTGCTGGACAAGATCGACATCATCCTTCTCATGTCGGTTAAC
CCTGGCTTCGGCGGACAGAGCTTCATCCCGAGCACTCTCGACAAGCTCAG
GGAGGCGCGCAAGATGATCGACGAGTCTGGCTACGATATCCGCCTCGAGG
TAAATCTAGCGCCGTCGAGGTAAATCTAGCGCCGATATATCCCATGAAAC
AGCAGCAGTACTGCATGGCGAAAGTGATGGGACAGCAGTACGGCAAGGCT
GGAGAGGCCGGTACCGGCCGTAGCTGGTGTCCCAGCCCCTTCATTCACTA
CAGAGTATTAACGATTGCTCATATTTCACACCGCACCAGCCATACAGCGA
GCAAGGCGTCGCCGTCCACTTGGACAAGAACTCAGCGACGAGGGTGCCGC
ATCCGTGGTATTGAAACGATCCGTTTTTGTCTATGATAGCGTTATTATTG
CGGGAGATGGCGCGACAAGTTGCGGATGTTGCATGCAACTAGCAGGTAGA
TCTGTGCGCTCTTGTCATTCGTGGCCCATATAACCGAGAGGGTGGGGGGG
CATGTATTGGTCGAAGCTTCAGATCGTAGACCCTCTCATCGCTGGATTGC
CCAGACGAAGCACGTCGGCAGTTGTCCGCTAACTCTCTTGCACGCATGAC
AGCTTCGAATAACCAGAGTGGTTTGGTGACCCAGTAGCACGCAGACCCAT
TTCAGGAAACGTATAGGATTTAGTATGGAAATGGCCGAATGTTATCTCGC
CGCCTACGCGCGGAGTTGTAGGATCCATATCGGCCTTGGTTATGAAAAAG
GCCCAAGTGTCGGGGTTAGCGTCAGCGTTCGTAGACAGCCCCTTCCCATC
ATATCAACTTCTTTTTTTTGCTCTTTTCATTTTTGTGACAGAAGCTTCCA
TATAGGGCAAACTATGTGAAAATAGTCGGCCAATCCTATACTTCACCCTT
TATGTTGACTTAATCGAGCTGCGAAGGCAGTCCCAGTGACCAGTCATGGA
CAAGTCACGGGGACATACTATCGTGACCTCGTATGTGCCTGATCAAATCA
CCTCCTATTCGTGGAGTTGGGGTTCTCCACCCCGCACAAAATGATCTTAC
TCGATCACCACATGTCCACACACATACACACAAAAATATATATTCTGCTG
CGAGCCTGGCCACCAATCTCAAGCACTGCTGTATCGGCTGGATGTTATTA
CAAAGCCGTGTCATAGAATTTCACAGCACCGGCTGTGTGCCAGTAGTTTA
CCAACCACAAATGAGTTGGAGAATTAGCAGGGGTGGCAACTTTTTTACTT
GCATTTGTCTGCACGTTAGGTGCGCTATGCCGGTTCTGGGGTCCCGCCTT
GTCTGTAGCGCCGAGATAGTGTGGATGGATGGCTCTTGTTGTAAGACGCA
GTGAACTGTGATATTTTTTTTACACGATGCTATTTAGCGCTTCACCCCCG
TTTCGATGACCAGATCTTATATCTATGCATCGTCCAGGATGTGTTTGTGC
CCCATCAACTGAATTGCGGCCACACTGTTTCTTAGCATTACTAATTACGT
AGGCGTGAGTAAATCAACCGAGATTCGCTTATCGTACAGGTGGACGGTGG
GTGCGGCGTGGCAAACATCAAGGAGATTGCGGAGGCGGGCGCCGACATGT
TCGTCGCGGGATCTGCCGTCTTCAACGAACCCCGGACAGAGGACAACTAC
AGGCAGACCATTGAAAAGATGCGCGCGGAGCTGGCCGACGCCACAATCGC
GTAAAGACATTGGCATGTTCGGTTTTTGTTAGGCACAACCTGCCGCGGCG
GACACAGATCGGTTCTTAAATTTAGAATCGTGTTTGATTTTTGGATTTGA
TCCTGCCGGGCGCTGGCGCGAGGGGGCTACACAGCTGTAATACAACTTAT
GTCGGCTCTCTACTTTGTTGCGAATGATACTCATGTCGATGCCAGGTTCC
CGTCCGAAAATGCGCCCCAGTCTACGCACATCAACACGATACCAGTGTAG
CTTGCGTCCTGTCGTCCGTGTTATGAAGTAGAGGAGAGAAAGGTGGCACT
GACTGCTGTGAATTCTGTGCCTGCCTACTTGAGATTTGTAGAACCCATTA
AAGACTTTTCTGTCAACCCATGTCAGATGAAATCCTTTTTGAGTGAGTTG
GACTGCTTCATTGGCATTCGTGGACATCGAATCAAGTCTTGTGTTTATTT
TTGAGCTGCTCACACCGCTTGTTATGGCAGGCAAAAGTACCCTCGAAAAG
TTTCTTCTTTTGGCAACTTTCTATCGGGAACTTTTGTCAAAAAAACTTTC
GTTGCACGCTCGGTATGGGGGCGAAGAAAGTTTTCTTCACGGGACTGGTG
GAATTCGGAGGCGTGATCATTTCTTGGTTATTGACCAACGGCGACAGCCA
GGCCCGTCACTTCAAACTACACCGCAAACCAACCAGGGCGTGCAGTAAAG
CCTGGAAAACATGTTGGGAGGTATCAAACCTGGCGTTTGCCTTCAAATCG
AAGCTAGGGAGACCTCTACTTGTGTTCATATTGGACAGAAACTGCTGACG
TAGACTCTATAATCCAAGTTTTCTACACAAGTGCGGCCATCTAGGCAACA
ACAGCTCGTCGTTCAAGTACTCTGAGCTGGCCGTTCATCTATCGTGTCGA
TCGTGCGCGTGTGTGTGTTTGGCGGGAGGGTCTACCTGTGTACCTGTGTG
GTACGGGAAAAGGTTCTCATCGTGGATTGGCCAAAGTCCCGCCGCGGGTA
CTTTCTTCGTCTACTTTCGAGGGGTCAAAAGTTTCCAAACTTTCTCTCCG
AATCGGGCGATTTTTTGCGAAAGCAAAAGTTTCCAAACTTTTAGAGGGTA
CTTTTTGCTCCCATACCGAGCGTACATGAGAAAGTTCCCGACGAAAGTAC
CAGAAAAAAACTTTTTGAGGGAACTTTTGCTTGCCATAACAAGCGGTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:643636..651234+

>mRNA_P-littoralis_Contig8.149.1 ID=mRNA_P-littoralis_Contig8.149.1|Name=mRNA_P-littoralis_Contig8.149.1|organism=Pylaiella littoralis U1_48|type=CDS|length=846bp|location=Sequence derived from alignment at P-littoralis_Contig8:643636..651234+ (Pylaiella littoralis U1_48)
ATGGCTAGGGGAGGAATGATGATGATTGCCACTGCGGCGTGCGTCGGCGT
GAGCCAGGCGTTCGTCACCCCGATGACAACTGTCTCGGCGGGCGCCACGT
CGGCGGCAACTGCACGAAAGTCCTCGTTGACGATGGCAGCGGAGAACGCA
TACCACAAGAAGGACTTCTGGATCGCCCCTTCCATCCTCTCGGCCAACAT
GGCCAAGCTGGGGGAGGAGGTGGACAACGCGATGTCTGCGGGCGCGGATA
TCGTCCACTTCGATGTGATGGACAACCACTACGTGCCGAACCTCACGATC
GGCCCCCTCGTGTGCAAGGGGCTGAGGGACCACGGCGTAACCAAACCCAT
CGACGTTCACCTCATGGTGTCGCCCGTGGACCGCATCGTCGGCGACTTTG
CTGACGCCGGCGCGTCCTTCATCACGTTCCACCCCGAGGCCTCGCCCCAC
GTGGACCGTACTTTGGGTCTCATCAAGTCCTACGGCTGCAAGGCTGGACT
TGTGTTCAACCCCGCCACTCCGCTTGACCACGCCAAGTACGTGCTGGACA
AGATCGACATCATCCTTCTCATGTCGGTTAACCCTGGCTTCGGCGGACAG
AGCTTCATCCCGAGCACTCTCGACAAGCTCAGGGAGGCGCGCAAGATGAT
CGACGAGTCTGGCTACGATATCCGCCTCGAGGTGGACGGTGGGTGCGGCG
TGGCAAACATCAAGGAGATTGCGGAGGCGGGCGCCGACATGTTCGTCGCG
GGATCTGCCGTCTTCAACGAACCCCGGACAGAGGACAACTACAGGCAGAC
CATTGAAAAGATGCGCGCGGAGCTGGCCGACGCCACAATCGCGTAA
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