mRNA_P-littoralis_Contig8.145.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.145.1
Unique NamemRNA_P-littoralis_Contig8.145.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig8.145.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 1.750e-65
Identity = 106/111 (95.50%), Postives = 106/111 (95.50%), Query Frame = 1
Query:    1 LTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNACTGLGVPVVECNCHRVNSAVLWALGIAGSATTCKNKLMGDLMKKLAALVGVFSHSAVNNDMLKEIQRLEADLHRVYE 333
            LTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNA T LGVPVVECNCHRVNSAVLWALGIAG A TCKNKLMGDLMKKLAA VGVFSHSAVNNDMLKEIQRLEADLHRVYE
Sbjct:  149 LTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLMGDLMKKLAASVGVFSHSAVNNDMLKEIQRLEADLHRVYE 259          
BLAST of mRNA_P-littoralis_Contig8.145.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 3.080e-60
Identity = 102/119 (85.71%), Postives = 107/119 (89.92%), Query Frame = 1
Query:    1 LTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNACTGLGVPVVECNCHRVNSAVLWALGIAGSATTCKNKLMGDLMKKLAALVGVFSHSAVNNDMLKEIQRLEADLHRVYELIRRNDTR 357
            LTLEYF DL+G SV+  DVFL FTVDQGKN+VNACT LGVPVVECNCHRVNSAVLWALGIAGSATTCKNK M    KKLAALVGVFSHSAVNNDMLKE+QRLEADLHR+YE IRRNDTR
Sbjct:  152 LTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKNKPM----KKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTR 266          
BLAST of mRNA_P-littoralis_Contig8.145.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 8.270e-59
Identity = 100/119 (84.03%), Postives = 105/119 (88.24%), Query Frame = 1
Query:    1 LTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNACTGLGVPVVECNCHRVNSAVLWALGIAGSATTCKNKLMGDLMKKLAALVGVFSHSAVNNDMLKEIQRLEADLHRVYELIRRNDTR 357
            LTLEY  DL+G SV+  DVFL FTVDQGKN+VNACT LGVPVVECNCHRVNSAVLWALGIAGS TTCKNK M    KKLAALVGVFSHSAVNNDMLKE+QRLEADLHR+YE IRRNDTR
Sbjct:  152 LTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKNKPM----KKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTR 266          
BLAST of mRNA_P-littoralis_Contig8.145.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 2.240e-54
Identity = 92/118 (77.97%), Postives = 102/118 (86.44%), Query Frame = 1
Query:    1 LTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNACTGLGVPVVECNCHRVNSAVLWALGIAGSATTCKNKLMGDLMKKLAALVGVFSHSAVNNDMLKEIQRLEADLHRVYELIRRNDT 354
            LT EYF   +G SV+P DVFL FTVDQG N+VNACT LGV VV+CNCHR+NSAV+WALGIAGSATTC+N  MG LMKKLAALVGVFS SAVNN MLKE+QRLE DLHR+YEL+RRNDT
Sbjct:    7 LTKEYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGGLMKKLAALVGVFSPSAVNN-MLKELQRLETDLHRIYELMRRNDT 123          
BLAST of mRNA_P-littoralis_Contig8.145.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 3.360e-53
Identity = 92/119 (77.31%), Postives = 102/119 (85.71%), Query Frame = 1
Query:    1 LTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNACTGLGVPVVECNCHRVNSAVLWALGIAGSATTCKNKLMGDLMKKLAALVGVFSHSAVNNDMLKEIQRLEADLHRVYELIRRNDTR 357
            LT EYF D +G  V+P DVFL FTVDQG N+VNAC  LGVPVV+CNCHRVN+AVLWALGIAG+    +NK+MGDLMKKLAALVGVFSHSAVNND LKE+QRLE DLH VY+LIRRNDTR
Sbjct:  341 LTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR--RNKVMGDLMKKLAALVGVFSHSAVNNDKLKELQRLEEDLHAVYQLIRRNDTR 457          
BLAST of mRNA_P-littoralis_Contig8.145.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.490e-49
Identity = 88/119 (73.95%), Postives = 97/119 (81.51%), Query Frame = 1
Query:    1 LTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNACTGLGVPVVECNCHRVNSAVLWALGIAGSATTCKNKLMGDLMKKLAALVGVFSHSAVNNDMLKEIQRLEADLHRVYELIRRNDTR 357
            LTLEYF   +G SVQP DVFL FTVDQGKNI+NACT LGV VVECNCHR+N+AV+WALGIAG      N  MG LMKKLAA+VGVFSHSAVNND LKE+QRLE    R+YEL+RRNDTR
Sbjct:  343 LTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTR 459          
BLAST of mRNA_P-littoralis_Contig8.145.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 3.160e-49
Identity = 87/119 (73.11%), Postives = 96/119 (80.67%), Query Frame = 1
Query:    1 LTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNACTGLGVPVVECNCHRVNSAVLWALGIAGSATTCKNKLMGDLMKKLAALVGVFSHSAVNNDMLKEIQRLEADLHRVYELIRRNDTR 357
            LTLEYF   +G SVQP DVFL FTVDQGKNI+NACT LGV VVECNCHR+N+AV+WALGIAG      N  MG LMKKLAA+VGVFSHSAVNND LKE+QRLE    R+YEL+R NDTR
Sbjct:  148 LTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRPNDTR 264          
BLAST of mRNA_P-littoralis_Contig8.145.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 3.860e-44
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = 1
Query:    1 LTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNACTGLGVPVVECNCHRVNSAVLWALGIAGSATTCKNKLMGDLMKKLAALVGVFSHSAVNNDMLKEIQRLEADLHRVYELIRRNDTR 357
            LT E+F D++G +VQP DVFL FTVDQG N+VNAC  L V V++CN HR+NS  +WALGI GS  T +N  M  LMK+LAA+VGVFSHSAVNND LK+IQRL+ +   +YELIRRNDTR
Sbjct:    3 LTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTR 121          
BLAST of mRNA_P-littoralis_Contig8.145.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.840e-43
Identity = 79/110 (71.82%), Postives = 88/110 (80.00%), Query Frame = 1
Query:   28 IGPSVQPHDVFLGFTVDQGKNIVNACTGLGVPVVECNCHRVNSAVLWALGIAGSATTCKNKLMGDLMKKLAALVGVFSHSAVNNDMLKEIQRLEADLHRVYELIRRNDTR 357
            +G SV P + FL FTVDQGKNI+NACT L V VVECNCHRVN+AV+WALGIA      KN  MG LMKKLAA+VGVFSHSAVNND LKE+QRLE    R+YEL+RRNDTR
Sbjct:    1 MGESVVPSNDFLAFTVDQGKNIINACTALDVTVVECNCHRVNTAVVWALGIAAKGR--KNPTMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTR 108          
BLAST of mRNA_P-littoralis_Contig8.145.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.830e-43
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = 1
Query:    1 LTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNACTGLGVPVVECNCHRVNSAVLWALGIAGSATTCKNKLMGDLMKKLAALVGVFSHSAVNNDMLKEIQRLEADLHRVYELIRRNDTR 357
            LT E+F D++G +VQP DVFL FTVDQG N+VNAC  L V V++CN HR+NS  +WALGI GS  T +N  M  LMK+LAA+VGVFSHSAVNND LK+IQRL+ +   +YELIRRNDTR
Sbjct:  331 LTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTR 449          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JXV5_9PHAE1.750e-6595.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE3.080e-6085.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE8.270e-5984.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE2.240e-5477.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE3.360e-5377.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG8_9PHAE1.490e-4973.95Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JTB8_9PHAE3.160e-4973.11Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KAN7_9PHAE3.860e-4464.71Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KAS2_9PHAE1.840e-4371.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ52_9PHAE5.830e-4364.71Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:621662..622020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size360
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791638.5491261-CDS-P-littoralis_Contig8:621661..6220181680791638.5491261-CDS-P-littoralis_Contig8:621661..622018Pylaiella littoralis U1_48CDSP-littoralis_Contig8 621662..622018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.145.1prot_P-littoralis_Contig8.145.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 621662..622018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.145.1

>prot_P-littoralis_Contig8.145.1 ID=prot_P-littoralis_Contig8.145.1|Name=mRNA_P-littoralis_Contig8.145.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
LTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNACTGLGVPVVECNCHRV
NSAVLWALGIAGSATTCKNKLMGDLMKKLAALVGVFSHSAVNNDMLKEIQ
RLEADLHRVYELIRRNDTR
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mRNA from alignment at P-littoralis_Contig8:621662..622020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.145.1 ID=mRNA_P-littoralis_Contig8.145.1|Name=mRNA_P-littoralis_Contig8.145.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=359bp|location=Sequence derived from alignment at P-littoralis_Contig8:621662..622020+ (Pylaiella littoralis U1_48)
CTCACGCTGGAGTACTTCAAGGACTTGATCGGGCCGTCGGTCCAGCCCCA CGACGTCTTCCTCGGGTTCACGGTGGATCAAGGAAAGAACATCGTGAACG CGTGTACGGGGTTGGGAGTTCCAGTCGTCGAGTGCAACTGTCACCGCGTC AATTCCGCCGTCCTGTGGGCCCTGGGTATTGCGGGTAGTGCGACGACTTG CAAGAACAAGCTGATGGGAGACCTGATGAAGAAGCTGGCAGCGTTGGTCG GCGTCTTCAGCCACTCCGCTGTCAACAACGACATGCTGAAGGAAATCCAG CGGCTGGAGGCGGATCTTCATCGCGTCTACGAGCTCATCCGGCGAAACGA CACCAGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:621662..622020+

>mRNA_P-littoralis_Contig8.145.1 ID=mRNA_P-littoralis_Contig8.145.1|Name=mRNA_P-littoralis_Contig8.145.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig8:621662..622020+ (Pylaiella littoralis U1_48)
CTCACGCTGGAGTACTTCAAGGACTTGATCGGGCCGTCGGTCCAGCCCCA
CGACGTCTTCCTCGGGTTCACGGTGGATCAAGGAAAGAACATCGTGAACG
CGTGTACGGGGTTGGGAGTTCCAGTCGTCGAGTGCAACTGTCACCGCGTC
AATTCCGCCGTCCTGTGGGCCCTGGGTATTGCGGGTAGTGCGACGACTTG
CAAGAACAAGCTGATGGGAGACCTGATGAAGAAGCTGGCAGCGTTGGTCG
GCGTCTTCAGCCACTCCGCTGTCAACAACGACATGCTGAAGGAAATCCAG
CGGCTGGAGGCGGATCTTCATCGCGTCTACGAGCTCATCCGGCGAAACGA
CACCAGG
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