mRNA_P-littoralis_Contig8.141.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.141.2
Unique NamemRNA_P-littoralis_Contig8.141.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig8.141.2 vs. uniprot
Match: D8LBI1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI1_ECTSI)

HSP 1 Score: 691 bits (1782), Expect = 1.220e-236
Identity = 386/538 (71.75%), Postives = 438/538 (81.41%), Query Frame = 1 
Query:  136 MLRRGLLRIVAHTQAHTTWASTVKS----AVGAKAWLSAATGGEN---DDPTPAKTKLTFSSSVYGKDSASAAELTAAEXXXXXXXXXXXEVDNAGMGAGVAPIHDSRNMFDSTLSQQAEDGKASDAIKREVAADTPDATRAAFGATAYGKDPQAAAALSEQETAEVEALRMRTQGGGASAGSAAAPVHDSRSMFDSDLTQGAGSTRASDAIKREVAADTPDATRVAFRASVYGKDASSAAALSEQEAAEVEALRMKARGGXXXXXXXAAPVHDSRNMFDSDLTQGVGSTRASDAIKRDVATDTPDATRVAFRASAYGKDPQTAASLSDQEAAEVEALQMRARGGGAVAGATPAPVHDSRSMFDSDLTQGAGSMQGSDSIKRHVAADTPEATRLVFGGSDYGKDQRSLARTEEKQAEIDVLAARAGAGTATAAAAPIHHDRSMFDSDLAEGAGSAPESKAIKRDVQTATPALTRLSFFGSTYGDDDPGANKAEHAQELAEKQKKGAKLARAGRGVQRSKLHDTKQAMADDEYSQAGSE 1728
            MLRRG+ R+  + ++  T A+ VK+    A G +AWLSA +GG++   DD TP KTKL FSSSVYGKD AS  E TA E           E   A  GA  AP+HD+RNMFDS+LSQQAEDGK S +IKR+VAADTPDATR AFGATAYGKDP+AAAALS QE  EVEALR R +G G  AG+AAAP+HD R+MFDSDLTQGAGST+A DAIKR+V  DTPDATRVAFRAS YGKD  +AAALSEQEAAEVEALRM+A+G        AAPVHDSR+MFDSDLTQG GST+ SD+IKR+V+ DTPDATRVAFRAS YGKD Q AA+LS+QEAAEV+ L++RA G GA + A  APVHDSRSMFDSDLTQGAG+MQGSDSIKRHVAA+TPEATRLVF GSDYGKD RS+  +E+K+AEI  LA R GAGT  AAAAPIHHDRSMFDSDLAEGAG+A ES AIKR V+TATPALTRLSFFGSTYGDDDPG+NKA+HAQ LAEKQKKGAKLAR G GVQ +K+H+T++AMADDEYSQAGSE
Sbjct:    1 MLRRGIFRVAVYARSQKTCAAGVKNLPAAAAGTRAWLSATSGGDSSDSDDVTPPKTKLAFSSSVYGKDPASGGEPTAEEAAAAAQLKREAEAGTAREGAAAAPVHDNRNMFDSSLSQQAEDGKESGSIKRDVAADTPDATRVAFGATAYGKDPEAAAALSAQEAEEVEALRARAKGDGV-AGAAAAPLHDRRNMFDSDLTQGAGSTQAFDAIKRDVKTDTPDATRVAFRASAYGKDPQTAAALSEQEAAEVEALRMRAQG---RGAAAAAPVHDSRSMFDSDLTQGAGSTQGSDSIKREVSGDTPDATRVAFRASVYGKDGQAAAALSEQEAAEVDELRVRAHGAGA-SSADAAPVHDSRSMFDSDLTQGAGAMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRSVDNSEKKKAEIAALAERVGAGTPAAAAAPIHHDRSMFDSDLAEGAGAARESTAIKRHVETATPALTRLSFFGSTYGDDDPGSNKADHAQALAEKQKKGAKLARVGAGVQSAKVHNTEKAMADDEYSQAGSE 533
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.141.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBI1_ECTSI1.220e-23671.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:614098..618791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3271
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003900.1
Cds size1596
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791638.4050214-UTR-P-littoralis_Contig8:614097..6141951680791638.4050214-UTR-P-littoralis_Contig8:614097..614195Pylaiella littoralis U1_48UTRP-littoralis_Contig8 614098..614195 +
1680791638.4163585-UTR-P-littoralis_Contig8:615058..6150951680791638.4163585-UTR-P-littoralis_Contig8:615058..615095Pylaiella littoralis U1_48UTRP-littoralis_Contig8 615059..615095 +
1680791638.4504614-UTR-P-littoralis_Contig8:617251..6187911680791638.4504614-UTR-P-littoralis_Contig8:617251..618791Pylaiella littoralis U1_48UTRP-littoralis_Contig8 617252..618791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791638.4312863-CDS-P-littoralis_Contig8:615095..6165181680791638.4312863-CDS-P-littoralis_Contig8:615095..616518Pylaiella littoralis U1_48CDSP-littoralis_Contig8 615096..616518 +
1680791638.4410806-CDS-P-littoralis_Contig8:617078..6172511680791638.4410806-CDS-P-littoralis_Contig8:617078..617251Pylaiella littoralis U1_48CDSP-littoralis_Contig8 617079..617251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.141.2prot_P-littoralis_Contig8.141.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 615096..617251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.141.2

>prot_P-littoralis_Contig8.141.2 ID=prot_P-littoralis_Contig8.141.2|Name=mRNA_P-littoralis_Contig8.141.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=532bp
MLRRGLLRIVAHTQAHTTWASTVKSAVGAKAWLSAATGGENDDPTPAKTK
LTFSSSVYGKDSASAAELTAAEAAAAAQLKLDVEVDNAGMGAGVAPIHDS
RNMFDSTLSQQAEDGKASDAIKREVAADTPDATRAAFGATAYGKDPQAAA
ALSEQETAEVEALRMRTQGGGASAGSAAAPVHDSRSMFDSDLTQGAGSTR
ASDAIKREVAADTPDATRVAFRASVYGKDASSAAALSEQEAAEVEALRMK
ARGGGAAAGAAAAPVHDSRNMFDSDLTQGVGSTRASDAIKRDVATDTPDA
TRVAFRASAYGKDPQTAASLSDQEAAEVEALQMRARGGGAVAGATPAPVH
DSRSMFDSDLTQGAGSMQGSDSIKRHVAADTPEATRLVFGGSDYGKDQRS
LARTEEKQAEIDVLAARAGAGTATAAAAPIHHDRSMFDSDLAEGAGSAPE
SKAIKRDVQTATPALTRLSFFGSTYGDDDPGANKAEHAQELAEKQKKGAK
LARAGRGVQRSKLHDTKQAMADDEYSQAGSE*
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mRNA from alignment at P-littoralis_Contig8:614098..618791+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.141.2 ID=mRNA_P-littoralis_Contig8.141.2|Name=mRNA_P-littoralis_Contig8.141.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4694bp|location=Sequence derived from alignment at P-littoralis_Contig8:614098..618791+ (Pylaiella littoralis U1_48)
CTTGCCCCCTCTACTCGTCGCTGAAGTACTAAACTGGCACACGTCTACAG
CTCAACAGCAACGGAAGCACAGCGCTGTCTCGTGCTGTATGCAACAAGGT
GAGCAAGGCGCGAAGCATGATTTCAAGGTTCCAAAGGCATGAGAAAAAAG
GTGCCTGCCATGGGCCGTATGCTCAAGTACGCGGCTCATCCGTTGTGTAT
ATTATGCCTGCTCCGGCAGACTGCTATTAGTCCGTGACAGCTGCTTGATT
ATGGCACTTCTCACGGAGCTGGAAGGTGTAATGCAGTTCCTGGTGGTTTC
AAACCGCGAAGGATGGCGACGCCCTAGCCGTCAAGTCCTGTAACTTGAAG
TGTCAATTTCAAGTGCAGCGATCTGGGTTTCGTTTGCGCTGCTGTCCCAC
TGAAAATTAATATCACAGCTGACAGAGTGTCGCAGCAAGCACACCAACCA
GCCTTGACTACCATATGGTACGCTTGTACAGCGAGGACAACGCAGTAGGA
CGACGCAGTACTGCGTCGTACTCGCTGCTGCGTCGTATCCGCTGTACAAA
TGTAGCAGTATGTTACTGCTGCTGCCGCTGCCACGATCGATCAGCAGTAC
TTATGTTTGTGATGAATCACACTTTTCGTGCACATGAACCTTGTTCCAGA
TCCAACAGGCAATACAAGTAGTCAAGCTGCTCGCTGTGTAGGTTTGTCGC
ATCCAGCACCCTACACCGTACTACTCGTACTACTGCTGGTTGCACTGGTG
TACAGCGTGTACGACGCAGTTGCTGCCGCTGCTACTGCCGCTGCTACCTT
TGTATGTGATGGATCATACTTTTCGTGCAGCATGAACCCTATTCTAGAGC
CAATAGGCAGTCGTCAAACTGCTTGCTTTGTTTGTACAGGCAAAAGTATT
TGACCTCGTCAGACGCTCGCCATGCCCACCCCTACTTGCACGTGGATTCT
GCATTCCGCAGCTGCAGTTTCCTGCTGCGACAACGCACGAAAGAAACCAT
GCTGCGAAGAGGGCTGTTAAGGATCGTTGCTCATACCCAGGCGCATACGA
CGTGGGCCTCCACCGTAAAGAGTGCCGTGGGGGCGAAAGCATGGCTATCC
GCGGCAACTGGCGGAGAAAATGACGACCCGACCCCCGCCAAGACGAAGCT
TACGTTTTCTTCCAGCGTGTATGGAAAGGATTCAGCGTCAGCGGCGGAAC
TCACCGCAGCAGAGGCGGCCGCGGCGGCGCAACTTAAGCTAGACGTGGAG
GTGGACAATGCGGGGATGGGAGCGGGAGTGGCACCCATTCACGACAGCAG
GAACATGTTTGACTCTACGTTGTCTCAACAAGCGGAGGACGGTAAGGCGT
CCGACGCCATCAAGCGCGAAGTTGCAGCCGACACACCGGATGCTACGCGA
GCAGCCTTCGGCGCAACCGCGTATGGCAAAGACCCTCAGGCTGCCGCCGC
GCTCTCTGAGCAGGAGACCGCCGAGGTAGAGGCGTTGCGGATGAGGACGC
AGGGCGGCGGTGCATCCGCTGGTTCCGCCGCCGCTCCTGTCCACGATTCC
AGGAGCATGTTCGACTCTGACCTCACGCAGGGGGCAGGGAGCACGCGGGC
GTCCGACGCCATCAAACGCGAGGTTGCTGCGGATACCCCAGACGCTACAC
GAGTAGCCTTCCGCGCGAGCGTGTATGGAAAGGATGCTTCGTCGGCGGCT
GCACTTTCAGAGCAAGAGGCCGCCGAGGTGGAAGCATTGCGGATGAAGGC
AAGAGGTGGCGGTGCTGCCGCTGGTGCCGCTGCCGCCCCGGTCCACGATT
CGAGGAACATGTTCGACTCCGACCTCACGCAGGGGGTAGGGAGCACACGG
GCATCCGACGCTATCAAGCGCGACGTTGCGACCGATACTCCGGACGCCAC
GCGAGTAGCCTTTCGTGCAAGTGCTTACGGGAAAGACCCTCAGACTGCCG
CTTCGCTCTCTGATCAGGAGGCCGCCGAGGTAGAGGCGTTGCAGATGAGG
GCCAGAGGCGGCGGTGCTGTCGCTGGTGCCACCCCCGCTCCGGTTCACGA
CTCGAGGAGCATGTTCGACTCCGACCTCACGCAGGGTGCCGGGAGCATGC
AGGGATCAGACTCGATCAAGCGGCACGTTGCGGCCGACACACCAGAAGCG
ACGCGGTTGGTCTTTGGAGGGTCCGACTACGGGAAGGACCAGCGCTCATT
GGCCCGCACGGAAGAGAAACAGGCCGAGATCGACGTGCTCGCAGCGAGAG
CAGGGGCGGGCACCGCCACTGCAGCTGCGGCACCGATCCACCACGATAGA
TCGATGTTTGACTCGGACCTAGCGGAAGGCGCAGGTTCAGCACCGGAGTC
CAAGGCGATCAAGCGGGACGTTCAGACGGCGACTCCGGCATTGACCCGTC
TCAGTTTCTTCGGTAGCACGTGTAAGTATTTTTTAATCGTTTTTTTTGTA
GGGGATGCTGTTGTAGGGAGGTTCGGCGGGTGTTCGTGTCCTGCTGTCTT
CTTGAAACTTCTTTTGTTTGCTTAATTGTCAATTTTGAGATATGCAACCG
TCCTATTTACACCTCTCTTGTCTCTGTCTTCACGTCTTTGTCGCGCAAGG
ACTTGCCGAGTTCATGTTTTTTCCGTGTGTGTCGCCTTGCATGCCTTACT
GGTAGTGCCTCAGTCGATGCCGCCCCAGGTTTGATGCAATATACTCTCCC
TCTGACGCAAGAGGCTGCAGTCGTGTTTCCCGTGACCCCACGAAAGCAAG
TAAGGAAGTACAGCAGTTGTGCGCTAAAGATATACACGAAATATTGCATT
ACTACGCGATAGCACTAGATATTATGTGGTCATTGCTTTCGTCCCCCTCC
TGTTTTATATGGGACGGTCCGTGGTTTGTCCGCGCGCTGACACCCAGAAC
ATGAGAAAATACCCTACCCCGACTTGTGTGGCATCCACCGCTGATTCGTG
TTGTGACCATGCTCGCTGTTGCTGCCAACAGACGGCGATGACGATCCTGG
CGCGAACAAAGCGGAGCACGCCCAGGAATTGGCAGAAAAGCAGAAGAAGG
GAGCCAAGCTGGCGAGGGCTGGAAGGGGTGTTCAACGTTCCAAGCTTCAT
GATACGAAGCAAGCGATGGCAGACGACGAGTATTCCCAAGCGGGGTCAGA
GTAACTTGGCAAACCTCACACCGTGCGTTCACTTTACGAGACGGATATAT
GCTTCACACGACGGATGTATGCAAATCGTTGTAGGGTGGGCACGTCTATT
TCTGGCGTTCGAGTTGGGCGTTCTAGTCGGGTTTGCTGCGACGTGTTGTG
ACGATTTGGGCGCGTGACTGGGGACGCGATCTGTGAAATACGAGAAGAAG
CACGTGACACAAAAAGCGCATTCCGATTCGGACAAATGACGCGCATAACA
AATCAAAACGGTATTAGTTGGTTGACGTCGGTGAGCTCAACTTGTTTTGC
TCCTTCATCTATTGCGTTTTTCCGACCAGTTATTTATGTTGGTTTTTCGG
GGTGGACCATGGGGAACGATACTTCACGGCCTCAAGTGAGATGCTGTACA
AAATGTGAAACCCCATCTCCGTGGTGTGTGGTGTGTATTTACATCCTATT
CACTTGAGGGCACCAGACTGGTCTACGGTCTACACCTTTGGAACATGGGG
GAACGATACTTGTAGGGCCGGATTTTTTTTTCATTTTTTGATAGAATCCG
AACGAACTTTTTCCGGCCAACGGTTGCCGATCCGCTGTTCTTATAGGTAC
ATAGGTGTTCGGATTTTCGGTGATCCCTTTTTTTAAGTATGTGGTTGACG
AGTCGCCTCCAGAGTGTATAGCTGCATCGAAGGACCGCAGGGTGGTGTTT
TTTGCGCTGAAACCCGTTTGCATCGCCGCTCGTAACTTTCGAACGAATGA
AGACACAGCAATGACGAAGGCATCTTCCGTGAGCTGTGTATATGATCCCC
CTCGTGTCGTGATCGCTTGGGTTAGGGTTACATCCGTACATTCGCAACGT
AGGTTTGCTCATGGCCAACTCATGCGAAACAAATTGAGAAAGATGTTTCA
GCCGGACTGCTGTAGAGCAGCATTGTTTTATACTGCTGTCTGTATTGTAG
TTGTACAGCAGTAGAGAAAGGAGATGACAGCTCGGGTTCTTTTTACAACA
CAACATGCCACAGCCACGAGCGATGACCATTTTGCGAACATGCTATTGCA
ATCCTCACCCAAACGATTACCACACGAGAGGAGCCATACGCACAGCTCAC
GGGAGATGGGTTTGTCATCGCTGTGGCTTCATTCATTGGGGAGTTACGAG
CGAAGATGCGAACTGTGGTCTCTCTCAGAGGAAGCTTTGATACTCCTCCT
CCTGCTGCTGCTGCTGTGCTGATGATGCTGCTGCTACGTACGGTTGGTTT
TGGTTGCTGATGAACACGATGGTATGAATGATGACACGGCAAGCGCACGC
AGAAAGATGGTGGACACATGTATGGACAGCAGCAGCTGCAACAACACAGA
AAGTAGTAGCAGAGCTCTCCTCCTCTTATGCTCTGTTGTGATTGATATCG
TTTGTTTTGTCTATACACCAAGAGAGAGATAACTTCACACATTTTTTTTT
TATATATTCTCCGATCGTATTTTCCGAACTGATCCAGCGTTCGGAAAATG
TCCGATTTTCCGAACGAAGTCCGATTCAAAGCTGTTCGGAAAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:614098..618791+

>mRNA_P-littoralis_Contig8.141.2 ID=mRNA_P-littoralis_Contig8.141.2|Name=mRNA_P-littoralis_Contig8.141.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1596bp|location=Sequence derived from alignment at P-littoralis_Contig8:614098..618791+ (Pylaiella littoralis U1_48)
ATGCTGCGAAGAGGGCTGTTAAGGATCGTTGCTCATACCCAGGCGCATAC
GACGTGGGCCTCCACCGTAAAGAGTGCCGTGGGGGCGAAAGCATGGCTAT
CCGCGGCAACTGGCGGAGAAAATGACGACCCGACCCCCGCCAAGACGAAG
CTTACGTTTTCTTCCAGCGTGTATGGAAAGGATTCAGCGTCAGCGGCGGA
ACTCACCGCAGCAGAGGCGGCCGCGGCGGCGCAACTTAAGCTAGACGTGG
AGGTGGACAATGCGGGGATGGGAGCGGGAGTGGCACCCATTCACGACAGC
AGGAACATGTTTGACTCTACGTTGTCTCAACAAGCGGAGGACGGTAAGGC
GTCCGACGCCATCAAGCGCGAAGTTGCAGCCGACACACCGGATGCTACGC
GAGCAGCCTTCGGCGCAACCGCGTATGGCAAAGACCCTCAGGCTGCCGCC
GCGCTCTCTGAGCAGGAGACCGCCGAGGTAGAGGCGTTGCGGATGAGGAC
GCAGGGCGGCGGTGCATCCGCTGGTTCCGCCGCCGCTCCTGTCCACGATT
CCAGGAGCATGTTCGACTCTGACCTCACGCAGGGGGCAGGGAGCACGCGG
GCGTCCGACGCCATCAAACGCGAGGTTGCTGCGGATACCCCAGACGCTAC
ACGAGTAGCCTTCCGCGCGAGCGTGTATGGAAAGGATGCTTCGTCGGCGG
CTGCACTTTCAGAGCAAGAGGCCGCCGAGGTGGAAGCATTGCGGATGAAG
GCAAGAGGTGGCGGTGCTGCCGCTGGTGCCGCTGCCGCCCCGGTCCACGA
TTCGAGGAACATGTTCGACTCCGACCTCACGCAGGGGGTAGGGAGCACAC
GGGCATCCGACGCTATCAAGCGCGACGTTGCGACCGATACTCCGGACGCC
ACGCGAGTAGCCTTTCGTGCAAGTGCTTACGGGAAAGACCCTCAGACTGC
CGCTTCGCTCTCTGATCAGGAGGCCGCCGAGGTAGAGGCGTTGCAGATGA
GGGCCAGAGGCGGCGGTGCTGTCGCTGGTGCCACCCCCGCTCCGGTTCAC
GACTCGAGGAGCATGTTCGACTCCGACCTCACGCAGGGTGCCGGGAGCAT
GCAGGGATCAGACTCGATCAAGCGGCACGTTGCGGCCGACACACCAGAAG
CGACGCGGTTGGTCTTTGGAGGGTCCGACTACGGGAAGGACCAGCGCTCA
TTGGCCCGCACGGAAGAGAAACAGGCCGAGATCGACGTGCTCGCAGCGAG
AGCAGGGGCGGGCACCGCCACTGCAGCTGCGGCACCGATCCACCACGATA
GATCGATGTTTGACTCGGACCTAGCGGAAGGCGCAGGTTCAGCACCGGAG
TCCAAGGCGATCAAGCGGGACGTTCAGACGGCGACTCCGGCATTGACCCG
TCTCAGTTTCTTCGGTAGCACGTACGGCGATGACGATCCTGGCGCGAACA
AAGCGGAGCACGCCCAGGAATTGGCAGAAAAGCAGAAGAAGGGAGCCAAG
CTGGCGAGGGCTGGAAGGGGTGTTCAACGTTCCAAGCTTCATGATACGAA
GCAAGCGATGGCAGACGACGAGTATTCCCAAGCGGGGTCAGAGTAA
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