mRNA_P-littoralis_Contig8.137.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.137.1
Unique NamemRNA_P-littoralis_Contig8.137.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: D8LBI3_ECTSI (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI3_ECTSI)

HSP 1 Score: 488 bits (1255), Expect = 6.390e-167
Identity = 330/414 (79.71%), Postives = 345/414 (83.33%), Query Frame = 1
Query:    1 LAPSCSFASRAGVAQCRFLSKKAAGGL---KKGN-KPKKGPAAIKARGAITVPKAAGKHGS--------ASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKARKASADXXXXXXXXXXXTAGEGVLPAAAGGAXXXXXXXXXXXXXXXXXSGKWGWGTTFLAGTSVGLAALGIAWQLKPDEVRRLLDDSPVDHFAIWIMNKYALYSSPVKDKLLLDCAVPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQDSAAVVSDFRSKV 1206
            L PSCS      VA  RFL+KK        KKG+  PKKGPAAIKARGA+ V KA GK GS        A+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKARKAS       XXXXXX              XXXXXXXXXXXXXXXXX   WGWGT  +AGTSVGLAALGIAWQLKPDE+R+LLDDSP+DHF IW M K+ALYSSPVKDKLLLDC +PPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEM+QLYEIV+FTDSMGGLADEWITQMDP GTISQRVYRDGTRYIDGKYVKDLSALNRPL QT+IIDDNADCISMQPENAIKVKAFSLEDGSDPTADT LYDLAPFLRALATQGVADFRDVLRPH G+DS AVV+DFRSKV
Sbjct:    9 LLPSCS----GRVATRRFLAKKXXXXXXXXKKGSGTPKKGPAAIKARGAMPVSKA-GKQGSKTGKTGGAAAREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKARKASVTAKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XWGWGTKLVAGTSVGLAALGIAWQLKPDEMRKLLDDSPIDHFFIWFMGKWALYSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTALYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKV 416          
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: A0A835YRZ2_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ2_9STRA)

HSP 1 Score: 209 bits (531), Expect = 3.300e-59
Identity = 116/260 (44.62%), Postives = 162/260 (62.31%), Query Frame = 1
Query:  496 SVGLAALG---IAWQLKPDEVRRLLDDSPVDHFAIWIMNKYAL----YSSPVKDKLLLDCAVPPGALPP-----PTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDP-----------TGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQDSAAVVSDFRSKV 1206
            +V LA +G   +AW+L  D++  L   SP+     W+  + A     ++ P  DKLL D   PP  LPP     PTLVLDLE TL+   + R+ GWRVA+RPG++ FL+EM+  YEIVIFT +  G A+  +T +DP           +G  S R+YRD T + +G +VKDLS +NR +   +IIDD  +   +QP+N I++K + ++ G DP ADT L DL PFLRALA +GV D+R+VLRP  GQDS AVV+++R +V
Sbjct:   90 TVTLAVIGGGALAWRLWHDDIAALYRRSPLHAAGRWVNAQLAEIARPFTEPSSDKLLPDW--PPSELPPDTPCPPTLVLDLENTLVHMDWHRRTGWRVARRPGVEEFLREMSMYYEIVIFTSAHVGSAEPIVTSLDPAVSRARGVEVSSGYTSHRLYRDATLFSNGTHVKDLSKINRDMKHVIIIDDEPEAFQLQPDNGIRIKPYEIKPGEDPHADTALTDLIPFLRALAMEGVRDYRNVLRPFRGQDSDAVVAEYRRRV 347          
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: A0A7J3D5D1_9ARCH (FCP1 homology domain-containing protein n=1 Tax=Nitrososphaeria archaeon TaxID=2268198 RepID=A0A7J3D5D1_9ARCH)

HSP 1 Score: 163 bits (412), Expect = 8.030e-44
Identity = 85/192 (44.27%), Postives = 123/192 (64.06%), Query Frame = 1
Query:  592 WIMNKYALYSSPVKDKLLLDCAVPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQ 1167
            +I ++   Y+ P  D+LL D  +PP A    TLVLDL+  L+ + +TR +GWR  KRPG++ FLK+MAQ YE+V++T  +   AD  + ++DP   +  R+YRD TRY++GK+V+DLS LNR L Q ++I  + D  ++QPENAIK+  ++ E   D    T L DL PFL A+    V D RDV+R + GQ
Sbjct:   65 YIESEMKKYADPPSDRLLPD--LPPHARHIKTLVLDLDDVLIHSDWTRARGWRTFKRPGVEDFLKDMAQYYELVVYTSQLPTYADPILDRLDPQRLLQYRLYRDSTRYVNGKHVRDLSMLNRDLKQVLLITASPDAYALQPENAIKLDKWTTEKSDD----TTLIDLLPFLEAIVRTSVTDVRDVVRSYDGQ 250          
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: A0A7S0ZB92_9RHOD (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZB92_9RHOD)

HSP 1 Score: 166 bits (419), Expect = 1.270e-43
Identity = 96/241 (39.83%), Postives = 142/241 (58.92%), Query Frame = 1
Query:  454 SGKWGWGTTFLAGTSVGLAALGIAWQLKPDEVRRLLDDSPVDHFAIWIMNKYALY-SSPVKDKLLLD-CAVPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQD 1170
            SG +  G    A T VG   LGIA+ +KP+E ++L+ +S          N Y  Y + P KDK L D   + PG  P  TLVLDL+ TL+ + +TR+ GW+++KRPG++AFL  M+  YEIV+FT  +   AD  + ++DP+G I QR+YRD T++ +G +V DLS LNR L   +++D + +   +QP+N + + ++     SDP  D  L +L PFL +L    V D R VL  + G D
Sbjct:  115 SGSFSIGRFLAASTLVGGIGLGIAYFVKPEETKKLVTESSET------ANAYIKYFTEPSKDKFLPDPMPMYPGGPPMRTLVLDLDETLVHSTWTRQSGWKISKRPGVEAFLAYMSSFYEIVVFTSGLNSYADPILDRLDPSGYIMQRLYRDATKFENGTHVFDLSKLNRDLENVILLDSHVEHAKLQPDNLLLIPSWK----SDPR-DRTLIELIPFLESLVRDDVRDVRPVLSSYVGLD 344          
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: M2W7T1_GALSU (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W7T1_GALSU)

HSP 1 Score: 162 bits (410), Expect = 1.260e-42
Identity = 91/236 (38.56%), Postives = 136/236 (57.63%), Query Frame = 1
Query:  469 WGTTFLAGTSVGLAALGIAWQLKPDEVRRLLDDSPVDHFAIWIMNKYALYSSPVKDKLLLDCAVPP--GALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQD 1170
            WG   L G   G   L   +   P++     D      +   + +K   ++ P ++KLL D  +P   G LPP TLVLDL+ TL+ + ++R  GW+ AKRPG+DAFL  M+  YEIV++T +M G  +  + ++DP G IS R+YRD T+Y  G ++KDLS LNR L +T+IIDD+A+C  +QP+N I++  F+ +       D  L DL PFL  +  + + D R V+  + G D
Sbjct:   72 WGKLTLVGLLSGGVGLAAYYVGNPEQFHAYFDK-----YKDAVESKVRYFTEPSRNKLLPD-PMPQYAGGLPPRTLVLDLDETLVHSTWSRATGWKTAKRPGVDAFLAYMSSFYEIVVYTSAMPGYGEPILEKLDPNGYISHRLYRDATKYEKGVHLKDLSKLNRDLARTIIIDDDANCFRLQPDNGIRIAPFTGD-----VNDRYLLDLIPFLEYIVREDIPDVRPVIGSYRGLD 296          
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: F0WSY2_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WSY2_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.880e-42
Identity = 100/241 (41.49%), Postives = 139/241 (57.68%), Query Frame = 1
Query:  490 GTSVGLAALGIAWQLKPDE-----VRRLLDDSPVDHFAIWIMNKYALYSSPVKD----KLLLDCA---VPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQDSA 1176
            G  +G  +  I W    DE     VR  L+ +P+     +   K A +  P+ D    KLL D     VPP   P P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ + Q YEIVIF+++   +A+E + ++DP   +   + RD TRY++G  VKDLS LNR L Q V++DD+     +QPENA+ +K F+     D   D  L DL PFL+ALA++ V+DFR VL     +D A
Sbjct:   85 GLIIGSISGSIVWFYLLDENVKTKVRHQLNQTPLGELYRFSAGKVAEWIRPITDPSRSKLLPDWPIPQVPPNTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQFYEIVIFSENY--MAEEIVMKLDPKQCVLHVLSRDATRYLNGSRVKDLSKLNRDLKQVVLLDDDPAAYQLQPENAVPIKPFANARDRD---DHELRDLIPFLKALASERVSDFRQVLAEFRDEDGA 320          
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: A0A8K1FDJ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDJ8_PYTOL)

HSP 1 Score: 160 bits (406), Expect = 6.010e-42
Identity = 92/199 (46.23%), Postives = 126/199 (63.32%), Query Frame = 1
Query:  616 YSSPVKDKLLLDCA---VPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQDSAAVVSDFRSK 1203
            Y+ P K+KLL D     VPP   P P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ +AQ YEIV+F+ +   +A+E + ++D    +   + R+ TRY +  +VKDLS LNR L Q VIIDD+     +QP+NAI +KA++  DG D   D  L DL PFL+ALA++ V DFR VL     +D   V+ D  +K
Sbjct:  143 YTEPSKEKLLPDWPIPQVPPDTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLEALAQYYEIVVFSQNHMYMAEEILVKLDRKQNVLHLLARESTRYFNSAHVKDLSKLNRDLRQVVIIDDDPSAYQLQPDNAIPIKAYT--DGRD-RGDHELKDLIPFLKALASERVGDFRSVLAEFRDEDG--VIRDLPTK 336          
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: M1V986_CYAM1 (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V986_CYAM1)

HSP 1 Score: 160 bits (406), Expect = 1.150e-41
Identity = 97/235 (41.28%), Postives = 138/235 (58.72%), Query Frame = 1
Query:  469 WGTTFLAGTSVGLAALGIA------WQLKPD-EVRRLLDDSPVDHFAIWIMNKYALYSSPVKDKLLLDCAVP-PGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVL 1149
            W   F  G  +G  ALG A      W + P+  V RL      +     + ++   Y  P ++KLL D   P PG+LPP TLVLDL+ TL+ + +TR  GWR +KRPG+DAFL  MAQ YEIV+FT ++ G AD  + +MDP G I+ R+YR  T+Y DG ++KDL+ LNR L +T+IID++    ++Q EN I++  ++   G+DP  D  L  L  FL  +    VAD R ++
Sbjct:   74 WRALFRPGRLLGFVALGSAATVLTFWVVDPEGTVARL------ERLRHELESRIRYYVEPSREKLLPDPVAPFPGSLPPRTLVLDLDETLVHSDWTRSTGWRTSKRPGVDAFLAYMAQFYEIVVFTSALPGYADPILDRMDPNGYITHRLYRHETKYRDGLHMKDLAKLNRDLRRTIIIDNDPRVFALQSENGIEIAPWN---GTDPD-DKELLRLTAFLEWVVRNDVADVRPII 298          
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: A0A059LE39_9CHLO (Mitochondrial import inner membrane translocase subunit TIM50 (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LE39_9CHLO)

HSP 1 Score: 155 bits (393), Expect = 1.900e-41
Identity = 84/214 (39.25%), Postives = 128/214 (59.81%), Query Frame = 1
Query:  574 VDHFAIW---IMNKYALYSSPVKDKLLLDCAVPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQDSAAVVSDFRSKV 1206
            VD +  W   +  +   Y+ P  D LL D  +PP A    TLVLDL+G L+ + +TR++GWR  KRPG++ FL  MAQ YE+VI+T  +   AD  + ++DP   +  R+YRD T+Y+ G++V+DLS LNR   Q +++  +A   ++QP++AIK++ + L+       DT L DL PFL A+    V D RDV++ + G D A    +  +KV
Sbjct:   20 VDWYVDWRTYLEGELRKYADPPSDALLPD--LPPAARHVKTLVLDLDGVLVHSDWTRERGWRTFKRPGVEDFLGTMAQYYELVIYTSQLPTYADPILDRLDPQRLVQYRLYRDSTQYVGGRHVRDLSKLNRDPRQVLLLTSDAHAYALQPDSAIKLQPWKLQ-----AQDTTLLDLIPFLEAIVRTAVPDVRDVVKSYEGLDVAVAFKERMAKV 226          
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: A0A662Y4U5_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4U5_9STRA)

HSP 1 Score: 159 bits (401), Expect = 4.420e-41
Identity = 94/199 (47.24%), Postives = 127/199 (63.82%), Query Frame = 1
Query:  616 YSSPVKDKLLLDCAVP--PGALPP-PTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQDSAAVVSDFRSK 1203
            ++ P + KLL D  +P  P   PP P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ + Q YEIVIF+ + G  A+E +T++DP       + RD TRY++G +VKDL+ LNR L Q VI+DD+     +QPENAI +K F+  DG D   D  L DL PFL+ALA++ V DFR V+     +D   V+ D  SK
Sbjct:  152 FTDPSRQKLLPDWPIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFSQNYG--AEEIVTKLDPKQCALHCLSRDSTRYLNGAHVKDLANLNRDLRQVVILDDDPAAYQLQPENAIPIKPFT--DGRD-REDHELKDLIPFLKALASERVPDFRSVIGEF--RDDDGVIRDVASK 343          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBI3_ECTSI6.390e-16779.71Mitochondrial import inner membrane translocase su... [more]
A0A835YRZ2_9STRA3.300e-5944.62Mitochondrial import inner membrane translocase su... [more]
A0A7J3D5D1_9ARCH8.030e-4444.27FCP1 homology domain-containing protein n=1 Tax=Ni... [more]
A0A7S0ZB92_9RHOD1.270e-4339.83Mitochondrial import inner membrane translocase su... [more]
M2W7T1_GALSU1.260e-4238.56Mitochondrial import inner membrane translocase su... [more]
F0WSY2_9STRA1.880e-4241.49Mitochondrial import inner membrane translocase su... [more]
A0A8K1FDJ8_PYTOL6.010e-4246.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M1V986_CYAM11.150e-4141.28Mitochondrial import inner membrane translocase su... [more]
A0A059LE39_9CHLO1.900e-4139.25Mitochondrial import inner membrane translocase su... [more]
A0A662Y4U5_9STRA4.420e-4147.24Mitochondrial import inner membrane translocase su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:592113..597107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBI3
Preferred nameTIMM50
PFAMsNIF
Model size1206
Max annot lvl2759|Eukaryota
KEGG koko:K17496
KEGG TC3.A.8.1
Hectar predicted targeting categorymitochondrion
GOsGO:0001836,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005048,GO:0005102,GO:0005126,GO:0005134,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006464,GO:0006470,GO:0006605,GO:0006626,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009987,GO:0012501,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0017038,GO:0019538,GO:0019866,GO:0023052,GO:0030150,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0035335,GO:0036211,GO:0042277,GO:0042578,GO:0042886,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0044743,GO:0044877,GO:0045184,GO:0046902,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0070851,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090559,GO:0097190,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1990542
Exons6
Evalue1.05e-167
EggNOG OGsCOG5190@1|root,KOG2832@2759|Eukaryota
Ec32 ortholog descriptionTim50 homolog, mitochondrial inner membrane protein of TIM23 complex
Ec32 orthologEc-27_003880.1
Descriptionprotein import into mitochondrial matrix
Cds size1206
COG categoryK
BRITEko00000,ko02000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.137.1prot_P-littoralis_Contig8.137.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 592113..597107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791638.0747094-CDS-P-littoralis_Contig8:592112..5927271680791638.0747094-CDS-P-littoralis_Contig8:592112..592727Pylaiella littoralis U1_48CDSP-littoralis_Contig8 592113..592727 +
1680791638.0894055-CDS-P-littoralis_Contig8:593984..5941121680791638.0894055-CDS-P-littoralis_Contig8:593984..594112Pylaiella littoralis U1_48CDSP-littoralis_Contig8 593985..594112 +
1680791638.0999937-CDS-P-littoralis_Contig8:594702..5948081680791638.0999937-CDS-P-littoralis_Contig8:594702..594808Pylaiella littoralis U1_48CDSP-littoralis_Contig8 594703..594808 +
1680791638.1152523-CDS-P-littoralis_Contig8:595253..5954151680791638.1152523-CDS-P-littoralis_Contig8:595253..595415Pylaiella littoralis U1_48CDSP-littoralis_Contig8 595254..595415 +
1680791638.1272533-CDS-P-littoralis_Contig8:595710..5958211680791638.1272533-CDS-P-littoralis_Contig8:595710..595821Pylaiella littoralis U1_48CDSP-littoralis_Contig8 595711..595821 +
1680791638.140736-CDS-P-littoralis_Contig8:597023..5971071680791638.140736-CDS-P-littoralis_Contig8:597023..597107Pylaiella littoralis U1_48CDSP-littoralis_Contig8 597024..597107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.137.1

>prot_P-littoralis_Contig8.137.1 ID=prot_P-littoralis_Contig8.137.1|Name=mRNA_P-littoralis_Contig8.137.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=402bp
LAPSCSFASRAGVAQCRFLSKKAAGGLKKGNKPKKGPAAIKARGAITVPK
AAGKHGSASANSSGAGAAGAGANAKPPPAVAAGSGGGGGSGFTKSEMLAA
RKARKASADAKTAAAAAAASTAGEGVLPAAAGGAAAGGKGAAAGGAGEAG
GSGKWGWGTTFLAGTSVGLAALGIAWQLKPDEVRRLLDDSPVDHFAIWIM
NKYALYSSPVKDKLLLDCAVPPGALPPPTLVLDLEGTLLGTIYTRKKGWR
VAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYR
DGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLE
DGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQDSAAVVSDFRS
KV
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mRNA from alignment at P-littoralis_Contig8:592113..597107+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.137.1 ID=mRNA_P-littoralis_Contig8.137.1|Name=mRNA_P-littoralis_Contig8.137.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4995bp|location=Sequence derived from alignment at P-littoralis_Contig8:592113..597107+ (Pylaiella littoralis U1_48)
CTCGCTCCTTCATGCAGCTTCGCCAGCAGGGCAGGGGTAGCTCAATGCCG CTTTCTCTCCAAGAAAGCAGCAGGAGGATTGAAGAAGGGCAACAAGCCGA AAAAGGGACCGGCAGCGATAAAAGCAAGGGGGGCGATTACGGTGCCGAAA GCCGCGGGAAAGCATGGAAGTGCCAGTGCTAATAGCAGCGGTGCAGGAGC AGCAGGAGCAGGAGCAAACGCAAAGCCTCCTCCGGCGGTGGCGGCTGGAA GCGGCGGCGGCGGCGGCAGTGGTTTCACCAAGAGCGAGATGCTTGCCGCA AGAAAGGCCAGAAAAGCGAGTGCGGACGCGAAAACGGCCGCGGCGGCTGC TGCAGCCTCGACGGCGGGAGAAGGGGTATTACCTGCAGCAGCAGGAGGAG CAGCAGCGGGTGGTAAAGGCGCTGCCGCGGGAGGGGCGGGCGAGGCGGGG GGATCGGGAAAGTGGGGATGGGGAACCACGTTCCTCGCGGGAACGTCGGT AGGGCTAGCGGCGTTGGGGATTGCATGGCAACTGAAGCCTGACGAAGTGA GGAGGCTCTTGGATGACAGTCCTGTCGACCATTTCGCCATCTGGATTATG AACAAGTACGCACTGGTGAGATGAGACCTTCGGTGCGTACCTGAAAGCGA AATTTTATACCTTTTTCATCGTGGCATTCTGACGATTTTATGGCACAACA GTGTTCCAATTTCATTTTGTAGGTGTGCACCTGCGATACGAACATGCTCA TGCGGGGGTACATACATGTTTGGGTTTCGACAAAGCCAGTTTATTAATCC TCCCGGAGCGGCGTATTTTTTCTCACATGTCAGGCTACGGTAGGTCGTGA GTCGTCACTTGTTTTCGAGACTGGCCAGCGCTGGTGAAAACCTGCCGTGG TGTACGCTAGAATCAAGAATGGCCGCGCGCAGGCGCCGCTCTTTGTCCCG CTCACCAAACAGCCGCGCAAAATAACGTCGATTTTTTTTTCATTCGACGT TTTACCGTTCAGTACGTTTGGCATTTTTGTACGGTGGTGTTAGAACGCTA AATAACACTTTCCTCCGGAAGTCTGTCCTCCGTATTGGACGAACGAAAAT ATATGTACGAGAAGGGTTGGGGCCTGTATGCGATGTGCTACTCTTGACCG TGCGCATTTCGAGAGCAGTCAAGGAACATTGAAGCACATGACACAGCCGG CGTTTTTGCCCGCGTTACCTGTCCATCGTTTGAGAACGTGTTGATGGTGA AGGAGCAGAGACGAAGTGTCTGATCTCGTCTAGGCGAAAGACGATTTGTA GCGGACAGTCCGGTAGGGGCCCTGATATTCCAGACGGTGTACTCTGACAA AAAGAGGCATTTTGCGCCTGTTCAATACTTCACGTACTTCCCACGCCAAT AGTAGAGCATCCTGGCAGGCTTCTCAATCCCCGATACTGTGGTTTCCCGC ACAGTGTGCATGCAGCACACACCCGCCTTTCACGGGCCCCCAATGCTCTA TTCGCAACCGAATATCGACATTTGTGAATAGCCATTGCGTACAGAGGACT TCAAGATTGAACAAGTGGCTCTGTTCTTGGCAGGCACGATGTTCTGTCTC ACCTGATATGCGCTGCCAATGGTCGACCACTAGCGCAAGAAGCAAACGAG TTCCCCCGCCCCCCCGCCCCTCCCCTCTCTTGCTGTGGGAGCTACCGGCT TTTGTTGCCGACGGCTTGATGAATCGGGCTTAGTCACGCTCTCCTTCCGC TGTCTCAGCATCTGTGCAACATCGTGATGTTTTTGACGAGAGGACGACAT CAATGTTCCACTCGCTTGCTTTGCCCATATGTGCTTTTGTGCTCGGTTGG TGTTCTGCCTGCTTGCTTTTAGTACTCGAGTCCGGTGAAAGACAAGCTCC TCCTCGACTGTGCGGTCCCACCGGGCGCGCTGCCCCCCCCTACGCTGGTG CTTGACCTGGAAGGGACACTTTTAGGCACCATCTACACCCGCAAAAAAGG GTAAGTGCCACGTACACCCTCTTGGATGAAAAATTAAAAATGGTTAACCT AGATGAAAGTTTTCTTTCGAGGAATGTCAATGAAGGATTTTCAGGCGGAG AGAAAAAACGAAACGAAATTCTACAATTTGCTTTACTAGACTCGATATTA GGTGTTTTGATGAAACGGATTCAGGTCTGGATATCAATGCATTGAAATCT ATTTCTGAAACAATTAATGGATTAATGGAAAATAAAAATACGTCTTCCAC ATTGGTGTCGAGATGCGTGTAGGGGTGGAAGTTAGTCGGTTGTTGCGTAC GGTCACCCAAGGACTGCGGGGCTCACTGGCCAATACGCAAGTTTAGAGGT TTTCAAGGTTGCCATCACCAAACTTCTCGTCTGCGAATAGTTGTTTGAGA TCGTGCTATCGCTCACCCGCCCCAAGATGTGGGGTATGTCCCTAGCGTGG TGTTGGTCGGTTTTTGACATTTTCATCGCAGCTCTTTGCATTCCGCATAT TTGCAAAACGACCAGGACGATACAGTAGATTGTGTATCACCAAGTTGCGA CATTTTACTCATTTTGCGTGTTTCGTGTTTGTTTCAACAGGTGGAGGGTT GCCAAGCGGCCAGGTCTGGACGCGTTTTTGAAGGAAATGGCCCAGCTGTA CGAAATTGTGATTTTCACGGACAGTATGGGGGGCTTAGCTGATGAGGTAG GAGAGGCAGAGAGAATCCAGCGTATCGTTGCCAAATAAATGCTCGAAATG CGCTTCTCACAACAGGACTCCTGGAACTCCAGTCGTGTATTGGCTTAACC CTGTTGGGGGCTTCCACTCAAAATCAGCAGTATAACCCGGCTAGTAACGA CTCCTCCGTGTTTCCGTTCTCTCAGTTGGTTGGCAGCGATCAACACATAC GTCGCTACTCTCTTATATAGCTGTTAGACACATCATGATAATGTAGGAAG CGTATTCTATCGCGAATACTTGTACATTTGCTGTACGCCGAATTTACGGT TTTAGCTGTCACACGCACCATGACAGTGCAGGAAGCGTATTCGCCAATAC ATGTACGCCAAATTTACGGTTCTCTCATGGCTCATCCCTCTATTGCGTCC TCGCCGAATTTTGCGATGGCTGTTCTATCTGCAACTCACAGTGGATCACC CAGATGGACCCTACCGGAACGATCAGCCAAAGGGTGTACCGCGACGGTAC AAGGTACATCGACGGCAAGTACGTCAAGGACCTATCCGCGCTTAATCGGC CTCTGAACCAAACGGTCATCATCGACGACAACGCCGACTGCATTTCGATG CAGGTGTGTGTGCTGAAGGAACTCCCCCTGCTGATTGATGTGCTGCCTGT ACCGCGTGTTGTTCGTGAGCATTTGCCGCCAGCGCCATTTGGGATGCGCT ACAGGCACAGCGATTTTCCATCAATCCAATTCAGCTGTCGGTGTACGGAA GGTCGGGAGTAGTCTTCAGCATGGAACCTGTCGTACCGACCTTTCATCGA CTGCTTCCCTTCATTTTTTCGGTGGAATGAAACATAAAACACCAACACAC CAACCCTCCACTTTTTTGTGCTGTATCCCCCTTCCTGTCCTCATTCAGCC TGAAAACGCCATCAAGGTGAAGGCGTTTTCGCTCGAGGACGGGTCTGATC CCACCGCCGATACTGTCCTGTACGACTTGGCTCCATTCCTCAGGGCGCTG GCAACACAGGTGAGTCTTAAGCGTATACTTCCTCTGTATCATAAGTATAG TCCGTTATGGGCGCGTAGTCGTTAGGGTACTTACACGTTGACGTTTAGCC TTTGGCCGGGTGCGTTGGAAAGGCAAAGCACATGCAAAGCTGACTAAAAA AAAATAAAATCGAAGACCATGTTATACACTAATATTAGGTCAAAATATGC CCAATTTGGCCCTTTTTGAGAATACTTTTTGAGAACTTTTTTGAGGTGTC TTGGTTTTTAGTGTGGTACCCCCAAGTGTCTTGGTTTTAGTAAGGGGACG CGATATGGATGGTTGAGTATAGCGAGGGTTAGCTTTAGGGTTGGGATAAT TCTTCTGTTTTTTGGCGGGGTTTCGGCTTGGTGCCCCACCCGCCCCTCTC CCTGAAAAGGGGCAAAATATGGCCGTTTTTGGGCCGACTCAATGTTTTCC GGCCGTTCGGCCGCGTGGTTCAAGCGCCGGCTAAAAAAAAAAAGTTTTTC TTGCTAAAAAAACGCCGGAGAATTAAAATAAAAACGAAAAACAGATTGGA CACCGTTAACGGTCTCTCCCAACATAACGGGCTATACTTATGATACAGAG AAGTATTGCTATATATGCCCTCTCGTGCATTGATGTCTTGCGGTGCGGGG TTGATTCCGGGATCAGCTGCACGTTCACTGTTTTCGAGCCTCCTAGCGTT GATAAACGCAACGATGGCTGCACACTGGCAAGGTGTCAAGTGTGCCTCAT CCCTGCTTCAGTCGGAGGAGCTACATAATAAAACACGTCTAATAATCGAC AAGCTCCCATCGTCGGTTTTACGATTGACTGTAAATGTATCTGACTGGTC TCGCTTTTTGTATCGCGGTTTTGCGAAGTGTTCTGGCTGCTGTGTTTCAC GCAAATAAGCGCCAGTTTCGCGAAGCGTGAAAACCGCCTAGATGTGGAGT GTGTGTTGTGTGTGTTGTCATCCCTTTAATTTGGAGTGGACAGTATTTCT GTAATTTTGGCCTAAACCACAACAAGTACGATACACACCATCACCGACAC TTGTGACCTGTGTGCCGCATGGCAACATCGTTATTACTGGACTCAACCAC AATACAGCATGGTCACAGCAGTAGTACACGCCACCATCGACGCAAACTCG CTACTCCCCGTTCTCACTCACACCCCGGCGGCTGCATCTGCCTGTTGAAC GCTTCGTCCAGGGGGTCGCCGACTTCCGCGACGTTTTGCGGCCCCACGCC GGCCAGGATTCCGCCGCCGTCGTGTCCGACTTCCGCTCCAAAGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:592113..597107+

>mRNA_P-littoralis_Contig8.137.1 ID=mRNA_P-littoralis_Contig8.137.1|Name=mRNA_P-littoralis_Contig8.137.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1206bp|location=Sequence derived from alignment at P-littoralis_Contig8:592113..597107+ (Pylaiella littoralis U1_48)
CTCGCTCCTTCATGCAGCTTCGCCAGCAGGGCAGGGGTAGCTCAATGCCG
CTTTCTCTCCAAGAAAGCAGCAGGAGGATTGAAGAAGGGCAACAAGCCGA
AAAAGGGACCGGCAGCGATAAAAGCAAGGGGGGCGATTACGGTGCCGAAA
GCCGCGGGAAAGCATGGAAGTGCCAGTGCTAATAGCAGCGGTGCAGGAGC
AGCAGGAGCAGGAGCAAACGCAAAGCCTCCTCCGGCGGTGGCGGCTGGAA
GCGGCGGCGGCGGCGGCAGTGGTTTCACCAAGAGCGAGATGCTTGCCGCA
AGAAAGGCCAGAAAAGCGAGTGCGGACGCGAAAACGGCCGCGGCGGCTGC
TGCAGCCTCGACGGCGGGAGAAGGGGTATTACCTGCAGCAGCAGGAGGAG
CAGCAGCGGGTGGTAAAGGCGCTGCCGCGGGAGGGGCGGGCGAGGCGGGG
GGATCGGGAAAGTGGGGATGGGGAACCACGTTCCTCGCGGGAACGTCGGT
AGGGCTAGCGGCGTTGGGGATTGCATGGCAACTGAAGCCTGACGAAGTGA
GGAGGCTCTTGGATGACAGTCCTGTCGACCATTTCGCCATCTGGATTATG
AACAAGTACGCACTGTACTCGAGTCCGGTGAAAGACAAGCTCCTCCTCGA
CTGTGCGGTCCCACCGGGCGCGCTGCCCCCCCCTACGCTGGTGCTTGACC
TGGAAGGGACACTTTTAGGCACCATCTACACCCGCAAAAAAGGGTGGAGG
GTTGCCAAGCGGCCAGGTCTGGACGCGTTTTTGAAGGAAATGGCCCAGCT
GTACGAAATTGTGATTTTCACGGACAGTATGGGGGGCTTAGCTGATGAGT
GGATCACCCAGATGGACCCTACCGGAACGATCAGCCAAAGGGTGTACCGC
GACGGTACAAGGTACATCGACGGCAAGTACGTCAAGGACCTATCCGCGCT
TAATCGGCCTCTGAACCAAACGGTCATCATCGACGACAACGCCGACTGCA
TTTCGATGCAGCCTGAAAACGCCATCAAGGTGAAGGCGTTTTCGCTCGAG
GACGGGTCTGATCCCACCGCCGATACTGTCCTGTACGACTTGGCTCCATT
CCTCAGGGCGCTGGCAACACAGGGGGTCGCCGACTTCCGCGACGTTTTGC
GGCCCCACGCCGGCCAGGATTCCGCCGCCGTCGTGTCCGACTTCCGCTCC
AAAGTC
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