mRNA_P-littoralis_Contig8.137.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: D8LBI3_ECTSI (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI3_ECTSI) HSP 1 Score: 488 bits (1255), Expect = 6.390e-167 Identity = 330/414 (79.71%), Postives = 345/414 (83.33%), Query Frame = 1
Query: 1 LAPSCSFASRAGVAQCRFLSKKAAGGL---KKGN-KPKKGPAAIKARGAITVPKAAGKHGS--------ASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKARKASADXXXXXXXXXXXTAGEGVLPAAAGGAXXXXXXXXXXXXXXXXXSGKWGWGTTFLAGTSVGLAALGIAWQLKPDEVRRLLDDSPVDHFAIWIMNKYALYSSPVKDKLLLDCAVPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQDSAAVVSDFRSKV 1206
L PSCS VA RFL+KK KKG+ PKKGPAAIKARGA+ V KA GK GS A+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKARKAS XXXXXX XXXXXXXXXXXXXXXXX WGWGT +AGTSVGLAALGIAWQLKPDE+R+LLDDSP+DHF IW M K+ALYSSPVKDKLLLDC +PPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEM+QLYEIV+FTDSMGGLADEWITQMDP GTISQRVYRDGTRYIDGKYVKDLSALNRPL QT+IIDDNADCISMQPENAIKVKAFSLEDGSDPTADT LYDLAPFLRALATQGVADFRDVLRPH G+DS AVV+DFRSKV
Sbjct: 9 LLPSCS----GRVATRRFLAKKXXXXXXXXKKGSGTPKKGPAAIKARGAMPVSKA-GKQGSKTGKTGGAAAREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKARKASVTAKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XWGWGTKLVAGTSVGLAALGIAWQLKPDEMRKLLDDSPIDHFFIWFMGKWALYSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTALYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKV 416
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: A0A835YRZ2_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ2_9STRA) HSP 1 Score: 209 bits (531), Expect = 3.300e-59 Identity = 116/260 (44.62%), Postives = 162/260 (62.31%), Query Frame = 1
Query: 496 SVGLAALG---IAWQLKPDEVRRLLDDSPVDHFAIWIMNKYAL----YSSPVKDKLLLDCAVPPGALPP-----PTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDP-----------TGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQDSAAVVSDFRSKV 1206
+V LA +G +AW+L D++ L SP+ W+ + A ++ P DKLL D PP LPP PTLVLDLE TL+ + R+ GWRVA+RPG++ FL+EM+ YEIVIFT + G A+ +T +DP +G S R+YRD T + +G +VKDLS +NR + +IIDD + +QP+N I++K + ++ G DP ADT L DL PFLRALA +GV D+R+VLRP GQDS AVV+++R +V
Sbjct: 90 TVTLAVIGGGALAWRLWHDDIAALYRRSPLHAAGRWVNAQLAEIARPFTEPSSDKLLPDW--PPSELPPDTPCPPTLVLDLENTLVHMDWHRRTGWRVARRPGVEEFLREMSMYYEIVIFTSAHVGSAEPIVTSLDPAVSRARGVEVSSGYTSHRLYRDATLFSNGTHVKDLSKINRDMKHVIIIDDEPEAFQLQPDNGIRIKPYEIKPGEDPHADTALTDLIPFLRALAMEGVRDYRNVLRPFRGQDSDAVVAEYRRRV 347
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: A0A7J3D5D1_9ARCH (FCP1 homology domain-containing protein n=1 Tax=Nitrososphaeria archaeon TaxID=2268198 RepID=A0A7J3D5D1_9ARCH) HSP 1 Score: 163 bits (412), Expect = 8.030e-44 Identity = 85/192 (44.27%), Postives = 123/192 (64.06%), Query Frame = 1
Query: 592 WIMNKYALYSSPVKDKLLLDCAVPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQ 1167
+I ++ Y+ P D+LL D +PP A TLVLDL+ L+ + +TR +GWR KRPG++ FLK+MAQ YE+V++T + AD + ++DP + R+YRD TRY++GK+V+DLS LNR L Q ++I + D ++QPENAIK+ ++ E D T L DL PFL A+ V D RDV+R + GQ
Sbjct: 65 YIESEMKKYADPPSDRLLPD--LPPHARHIKTLVLDLDDVLIHSDWTRARGWRTFKRPGVEDFLKDMAQYYELVVYTSQLPTYADPILDRLDPQRLLQYRLYRDSTRYVNGKHVRDLSMLNRDLKQVLLITASPDAYALQPENAIKLDKWTTEKSDD----TTLIDLLPFLEAIVRTSVTDVRDVVRSYDGQ 250
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: A0A7S0ZB92_9RHOD (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZB92_9RHOD) HSP 1 Score: 166 bits (419), Expect = 1.270e-43 Identity = 96/241 (39.83%), Postives = 142/241 (58.92%), Query Frame = 1
Query: 454 SGKWGWGTTFLAGTSVGLAALGIAWQLKPDEVRRLLDDSPVDHFAIWIMNKYALY-SSPVKDKLLLD-CAVPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQD 1170
SG + G A T VG LGIA+ +KP+E ++L+ +S N Y Y + P KDK L D + PG P TLVLDL+ TL+ + +TR+ GW+++KRPG++AFL M+ YEIV+FT + AD + ++DP+G I QR+YRD T++ +G +V DLS LNR L +++D + + +QP+N + + ++ SDP D L +L PFL +L V D R VL + G D
Sbjct: 115 SGSFSIGRFLAASTLVGGIGLGIAYFVKPEETKKLVTESSET------ANAYIKYFTEPSKDKFLPDPMPMYPGGPPMRTLVLDLDETLVHSTWTRQSGWKISKRPGVEAFLAYMSSFYEIVVFTSGLNSYADPILDRLDPSGYIMQRLYRDATKFENGTHVFDLSKLNRDLENVILLDSHVEHAKLQPDNLLLIPSWK----SDPR-DRTLIELIPFLESLVRDDVRDVRPVLSSYVGLD 344
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: M2W7T1_GALSU (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W7T1_GALSU) HSP 1 Score: 162 bits (410), Expect = 1.260e-42 Identity = 91/236 (38.56%), Postives = 136/236 (57.63%), Query Frame = 1
Query: 469 WGTTFLAGTSVGLAALGIAWQLKPDEVRRLLDDSPVDHFAIWIMNKYALYSSPVKDKLLLDCAVPP--GALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQD 1170
WG L G G L + P++ D + + +K ++ P ++KLL D +P G LPP TLVLDL+ TL+ + ++R GW+ AKRPG+DAFL M+ YEIV++T +M G + + ++DP G IS R+YRD T+Y G ++KDLS LNR L +T+IIDD+A+C +QP+N I++ F+ + D L DL PFL + + + D R V+ + G D
Sbjct: 72 WGKLTLVGLLSGGVGLAAYYVGNPEQFHAYFDK-----YKDAVESKVRYFTEPSRNKLLPD-PMPQYAGGLPPRTLVLDLDETLVHSTWSRATGWKTAKRPGVDAFLAYMSSFYEIVVYTSAMPGYGEPILEKLDPNGYISHRLYRDATKYEKGVHLKDLSKLNRDLARTIIIDDDANCFRLQPDNGIRIAPFTGD-----VNDRYLLDLIPFLEYIVREDIPDVRPVIGSYRGLD 296
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: F0WSY2_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WSY2_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.880e-42 Identity = 100/241 (41.49%), Postives = 139/241 (57.68%), Query Frame = 1
Query: 490 GTSVGLAALGIAWQLKPDE-----VRRLLDDSPVDHFAIWIMNKYALYSSPVKD----KLLLDCA---VPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQDSA 1176
G +G + I W DE VR L+ +P+ + K A + P+ D KLL D VPP P P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ + Q YEIVIF+++ +A+E + ++DP + + RD TRY++G VKDLS LNR L Q V++DD+ +QPENA+ +K F+ D D L DL PFL+ALA++ V+DFR VL +D A
Sbjct: 85 GLIIGSISGSIVWFYLLDENVKTKVRHQLNQTPLGELYRFSAGKVAEWIRPITDPSRSKLLPDWPIPQVPPNTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQFYEIVIFSENY--MAEEIVMKLDPKQCVLHVLSRDATRYLNGSRVKDLSKLNRDLKQVVLLDDDPAAYQLQPENAVPIKPFANARDRD---DHELRDLIPFLKALASERVSDFRQVLAEFRDEDGA 320
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: A0A8K1FDJ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDJ8_PYTOL) HSP 1 Score: 160 bits (406), Expect = 6.010e-42 Identity = 92/199 (46.23%), Postives = 126/199 (63.32%), Query Frame = 1
Query: 616 YSSPVKDKLLLDCA---VPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQDSAAVVSDFRSK 1203
Y+ P K+KLL D VPP P P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ +AQ YEIV+F+ + +A+E + ++D + + R+ TRY + +VKDLS LNR L Q VIIDD+ +QP+NAI +KA++ DG D D L DL PFL+ALA++ V DFR VL +D V+ D +K
Sbjct: 143 YTEPSKEKLLPDWPIPQVPPDTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLEALAQYYEIVVFSQNHMYMAEEILVKLDRKQNVLHLLARESTRYFNSAHVKDLSKLNRDLRQVVIIDDDPSAYQLQPDNAIPIKAYT--DGRD-RGDHELKDLIPFLKALASERVGDFRSVLAEFRDEDG--VIRDLPTK 336
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: M1V986_CYAM1 (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V986_CYAM1) HSP 1 Score: 160 bits (406), Expect = 1.150e-41 Identity = 97/235 (41.28%), Postives = 138/235 (58.72%), Query Frame = 1
Query: 469 WGTTFLAGTSVGLAALGIA------WQLKPD-EVRRLLDDSPVDHFAIWIMNKYALYSSPVKDKLLLDCAVP-PGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVL 1149
W F G +G ALG A W + P+ V RL + + ++ Y P ++KLL D P PG+LPP TLVLDL+ TL+ + +TR GWR +KRPG+DAFL MAQ YEIV+FT ++ G AD + +MDP G I+ R+YR T+Y DG ++KDL+ LNR L +T+IID++ ++Q EN I++ ++ G+DP D L L FL + VAD R ++
Sbjct: 74 WRALFRPGRLLGFVALGSAATVLTFWVVDPEGTVARL------ERLRHELESRIRYYVEPSREKLLPDPVAPFPGSLPPRTLVLDLDETLVHSDWTRSTGWRTSKRPGVDAFLAYMAQFYEIVVFTSALPGYADPILDRMDPNGYITHRLYRHETKYRDGLHMKDLAKLNRDLRRTIIIDNDPRVFALQSENGIEIAPWN---GTDPD-DKELLRLTAFLEWVVRNDVADVRPII 298
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: A0A059LE39_9CHLO (Mitochondrial import inner membrane translocase subunit TIM50 (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LE39_9CHLO) HSP 1 Score: 155 bits (393), Expect = 1.900e-41 Identity = 84/214 (39.25%), Postives = 128/214 (59.81%), Query Frame = 1
Query: 574 VDHFAIW---IMNKYALYSSPVKDKLLLDCAVPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQDSAAVVSDFRSKV 1206
VD + W + + Y+ P D LL D +PP A TLVLDL+G L+ + +TR++GWR KRPG++ FL MAQ YE+VI+T + AD + ++DP + R+YRD T+Y+ G++V+DLS LNR Q +++ +A ++QP++AIK++ + L+ DT L DL PFL A+ V D RDV++ + G D A + +KV
Sbjct: 20 VDWYVDWRTYLEGELRKYADPPSDALLPD--LPPAARHVKTLVLDLDGVLVHSDWTRERGWRTFKRPGVEDFLGTMAQYYELVIYTSQLPTYADPILDRLDPQRLVQYRLYRDSTQYVGGRHVRDLSKLNRDPRQVLLLTSDAHAYALQPDSAIKLQPWKLQ-----AQDTTLLDLIPFLEAIVRTAVPDVRDVVKSYEGLDVAVAFKERMAKV 226
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Match: A0A662Y4U5_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4U5_9STRA) HSP 1 Score: 159 bits (401), Expect = 4.420e-41 Identity = 94/199 (47.24%), Postives = 127/199 (63.82%), Query Frame = 1
Query: 616 YSSPVKDKLLLDCAVP--PGALPP-PTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMAQLYEIVIFTDSMGGLADEWITQMDPTGTISQRVYRDGTRYIDGKYVKDLSALNRPLNQTVIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTVLYDLAPFLRALATQGVADFRDVLRPHAGQDSAAVVSDFRSK 1203
++ P + KLL D +P P PP P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ + Q YEIVIF+ + G A+E +T++DP + RD TRY++G +VKDL+ LNR L Q VI+DD+ +QPENAI +K F+ DG D D L DL PFL+ALA++ V DFR V+ +D V+ D SK
Sbjct: 152 FTDPSRQKLLPDWPIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFSQNYG--AEEIVTKLDPKQCALHCLSRDSTRYLNGAHVKDLANLNRDLRQVVILDDDPAAYQLQPENAIPIKPFT--DGRD-REDHELKDLIPFLKALASERVPDFRSVIGEF--RDDDGVIRDVASK 343 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig8.137.1 >prot_P-littoralis_Contig8.137.1 ID=prot_P-littoralis_Contig8.137.1|Name=mRNA_P-littoralis_Contig8.137.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=402bp LAPSCSFASRAGVAQCRFLSKKAAGGLKKGNKPKKGPAAIKARGAITVPKback to top mRNA from alignment at P-littoralis_Contig8:592113..597107+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig8.137.1 ID=mRNA_P-littoralis_Contig8.137.1|Name=mRNA_P-littoralis_Contig8.137.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4995bp|location=Sequence derived from alignment at P-littoralis_Contig8:592113..597107+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig8:592113..597107+ >mRNA_P-littoralis_Contig8.137.1 ID=mRNA_P-littoralis_Contig8.137.1|Name=mRNA_P-littoralis_Contig8.137.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1206bp|location=Sequence derived from alignment at P-littoralis_Contig8:592113..597107+ (Pylaiella littoralis U1_48)back to top |