mRNA_P-littoralis_Contig8.132.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.132.1
Unique NamemRNA_P-littoralis_Contig8.132.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig8.132.1 vs. uniprot
Match: D8LBI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI5_ECTSI)

HSP 1 Score: 350 bits (899), Expect = 4.800e-114
Identity = 163/202 (80.69%), Postives = 183/202 (90.59%), Query Frame = 1 
Query:  748 MAVTPTRSNGATCWSIFMDFRYPFPWEVTAAFVLRAKAKGPPDDMVTLEVDRNVFKYDVRMPWYARFILGKNIIWHDVLHADPATKMLSEDGMNMNLLRMGTVRDCSSWRACNDDPNVTLYSKRVDFEIRMPVGPTIMMQVAQPLMQWFRTKSHLCRELEVQSIRDFLVSEKGDTQQERAKRIADDTAWMAALTAE-TPATS 1350
            M+VTPTRS G T WSI MDFRYPFPWE TAAFVLR KAKGPPD+MVTLEVDRNVFKY+V MPWYAR +LGKNIIWHDVLHA+P TK LSEDG+NM+L R+GTVRDCSSWRAC DDPNVT+YSKRVDF+IRMPVGPTIMMQVAQPLM+WFRTKSHLCRELEVQ+IR+F+ +EKG T++ER +R+A+D AWMAALTAE TP  S
Sbjct:    1 MSVTPTRSGGVTSWSILMDFRYPFPWETTAAFVLRVKAKGPPDEMVTLEVDRNVFKYNVHMPWYARLVLGKNIIWHDVLHANPTTKTLSEDGINMSLQRLGTVRDCSSWRACEDDPNVTMYSKRVDFDIRMPVGPTIMMQVAQPLMRWFRTKSHLCRELEVQAIREFIEAEKGKTEEERTERLANDAAWMAALTAEATPPVS 202
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BLAST of mRNA_P-littoralis_Contig8.132.1 vs. uniprot
Match: A0A835YI97_9STRA (PRELI/MSF1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI97_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.510e-35
Identity = 66/143 (46.15%), Postives = 89/143 (62.24%), Query Frame = 1 
Query:  811 YPFPWEVTAAFVLRAKAKGPPDDMVTLEVDRNVFKYDVRMPWYARFILGKNIIWHDVLHADPATKMLSEDGMNMNLLRMGTVRDCSSWRACNDDPNVTLYSKRVDFEIRMPVGPTIMMQVAQPLMQWFRTKSHLCRELEVQSI 1239
            YPFPWE  A FVL  K KGPPDD + L  +   F Y + MPWYAR +LG  ++W DV+  D   + ++E G N NLL  G V D S W A  ++P  TLYSK VDF ++      ++++V+ PL++WFR KS L RE+E  +I
Sbjct:   68 YPFPWERVADFVLSEKTKGPPDDQIKLITEGLTFHYSIPMPWYARLLLGPVVLWDDVITVDYVKREMTERGRNTNLLSHGLVTDTSHWVASKENPQETLYSKTVDFNVKATWSAELILRVSGPLIKWFRAKSMLMREIETAAI 210
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBI5_ECTSI4.800e-11480.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YI97_9STRA3.510e-3546.15PRELI/MSF1 domain-containing protein n=1 Tax=Tribo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:570665..575385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1793
Hectar predicted targeting categorysignal peptide
Exons6
Cds size963
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.132.1prot_P-littoralis_Contig8.132.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 570778..574668 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791637.78747-UTR-P-littoralis_Contig8:570664..5707771680791637.78747-UTR-P-littoralis_Contig8:570664..570777Pylaiella littoralis U1_48UTRP-littoralis_Contig8 570665..570777 -
1680791637.8754053-UTR-P-littoralis_Contig8:574668..5753851680791637.8754053-UTR-P-littoralis_Contig8:574668..575385Pylaiella littoralis U1_48UTRP-littoralis_Contig8 574669..575385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791637.7986968-CDS-P-littoralis_Contig8:570777..5710021680791637.7986968-CDS-P-littoralis_Contig8:570777..571002Pylaiella littoralis U1_48CDSP-littoralis_Contig8 570778..571002 -
1680791637.8099084-CDS-P-littoralis_Contig8:571759..5720471680791637.8099084-CDS-P-littoralis_Contig8:571759..572047Pylaiella littoralis U1_48CDSP-littoralis_Contig8 571760..572047 -
1680791637.8218045-CDS-P-littoralis_Contig8:573007..5731691680791637.8218045-CDS-P-littoralis_Contig8:573007..573169Pylaiella littoralis U1_48CDSP-littoralis_Contig8 573008..573169 -
1680791637.8352733-CDS-P-littoralis_Contig8:573319..5734161680791637.8352733-CDS-P-littoralis_Contig8:573319..573416Pylaiella littoralis U1_48CDSP-littoralis_Contig8 573320..573416 -
1680791637.8467803-CDS-P-littoralis_Contig8:573727..5738261680791637.8467803-CDS-P-littoralis_Contig8:573727..573826Pylaiella littoralis U1_48CDSP-littoralis_Contig8 573728..573826 -
1680791637.8620899-CDS-P-littoralis_Contig8:574576..5746681680791637.8620899-CDS-P-littoralis_Contig8:574576..574668Pylaiella littoralis U1_48CDSP-littoralis_Contig8 574577..574668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.132.1

>prot_P-littoralis_Contig8.132.1 ID=prot_P-littoralis_Contig8.132.1|Name=mRNA_P-littoralis_Contig8.132.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=321bp
MSVSPQLLALMAVTPTRSNGATCWSIFMDFRYPFPWEVTAAFVLRAKAKG
PPDDMVTLEVDRNVFKYDVRMPWYARFILGKNIIWHDVLHADPATKMLSE
DGMNMNLLRMGTVRDCSSWRACNDDPNVTLYSKRVDFEIRMPVGPTIMMQ
VAQPLMQWFRTKSHLCRELEVQSIRDFLVSEKGDTQQERAKRIADDTAWM
AALTAETPATSSSTPASSSCSSPPCCSEDDRRDSADEEEEEESHVQVSSP
CCSSPSTNNKPSTRTRLAAGWAKVKHLTARAREKLANAAGSSAVAERRPR
PHTATAATATETSTDRFDSV*
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mRNA from alignment at P-littoralis_Contig8:570665..575385-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.132.1 ID=mRNA_P-littoralis_Contig8.132.1|Name=mRNA_P-littoralis_Contig8.132.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4721bp|location=Sequence derived from alignment at P-littoralis_Contig8:570665..575385- (Pylaiella littoralis U1_48)
GCAGTCTTCACTCCAACACTCACATCCTTACACGTGGACACGCACATGCA
CCCACCACACAGCTCCCCACAGCAGTATTCCACTTTTCCTTATTGGCACC
ATGTTATGGAGCCGGTGTGCACAAACGCACAATACCTGGTATACGATGTA
AAAGGCGCCGCACTTGTTGCGATTCCGCACTCAATTCAAATCTCGGAGTA
GTTGAGCGTCACGGCCTGCCCGCAGTCGTACCGGTAACGTCCTCTATTAC
GACGGAAACGCACAACATAGAGGTGAGAAAACCCTAATACATGCTCGTAA
TAGTCACACAACGCCCTGCTTCAGTGAGGCAACTGGCTAAGTATTTTCCT
CCTGGCTGCATGTGCACAATCTTTAAGATCGATTGAAATTACTCACACCA
TGTTTCATCCCCACCCAATGGGCCTACGTTGTTATGGCTGAGCATACCGT
GTGATGCAGTTCTTACCCCAGTCGTCGAAACACTGCTGTATCGTCAACCA
CGAACCGTTAAACTTCGCTAGCCATCAGTCTCATCGAGCTCTTGGCTGAT
GTTGTTCAATCGCTGAGTCATCCTCGGTTGACTGTTGCATTCAACAATTT
TATCAGGGAACCGCCACAGGCGAGGGCGGAACTGAAGACGGAGGGGCGGT
GTTGGGGTCGGTTGATTGCGTCCTCACTCTTCACGGTAGCTCGCGGTATC
ATTGACCTACATCAAGCATGAGCGTGTCGCCGCAGCTGCTCGCTCTCATG
GCCGTCACCCCGACTCGCAGCAATGGTGCCACCTGTTGGTCCATCTTCAT
GGACTTCAGGTGATGACTCTTCCAATGATATCATACGGCGCACGCGAGAG
AGAACTTGCGCAGTCAGTTTCAAAGAATGGTGGAGGATAGGGAAGGCGTC
AGTACGCATGATAATACAATTTACCGATGATGTGATATTGACTGCTTCTT
GTACTGACTGCCGTGTTTTTTCATTTGGTCAGATGCATCTGACCTTTTTT
TCCTAGATAGCCATGTCGTCGAAAGGAAGTCGACTCCAGCCGTGTGTGGT
AACATCTCATCATCGTATATCACGTCATGACAGGGTTCTTGTGGTCTACC
ACCGCATTTTACAGTCGGAAGTCACTGCTGTTACACCGCCCGCTGTTGCT
GTCGTCGTTGTTGCTGGTGTCCTTCATCCTTCACCGCAAGTGCTTGTGCG
TATCGGATTATTGCCGCGAATGTACCGCTACATGCAGAAGAACCCAGCCG
TTGAAAACAAGAGGAGATAATTAGCTCGCTCCTCCGTTAACCCGCTGCTG
CTTGTGGCACACACGGTACATAACCCCCGACGTCCGCACACCGCTCGTCC
ACACGGTTGTATTTCTCGTCTACTAGTTTTTTCAAAATAATTTTTTTTAG
GGCTGCGTTCGGATCTCGGTCACACAGAAAGGTGTCCGATTTGATTGTCA
TCCCCGCGCCCCGCCCTGACTCCTCTCGTGTGTACACGTACCACTCCTCT
TTTTTTTTGTGTGTGCGTGTGCGTGTCTGCCCTCGATTACATCGCCGTCG
TTTTTCCAGATATCCCTTCCCCTGGGAGGTAACCGCTGCTTTTGTTTTGA
GGGCGAAAGCTAAAGGACCCCCAGACGATATGGTGACTCTGGAGGTCGAC
CGCAACGTGTGAGTGAGAGCAGAGCAGTCGCAGCAGGGGCAGTACCGGCA
GCTGCAGCAGCGAGCTCGAAAACACCCGAGGGACCAAACAGGCGCCACTG
TGTTTTTGTGTTTGCTCGCCTTTCCAACGCTGCGAAGGTGTCGCGGATTT
GATCTGCCCACTCTCCTCACGTTTCTAATTGTGGTCGTTATCCGCACCTC
TTGTTTATCCCTCTCGTGTCTCCGGTACTAATGCTGGTGCTGGTGCTGGT
GCTCGTTCTTGGGCAAACATCGGATTTCCCTGCCGCCGGGGTCCCGTTTC
GATTGCTCGGCTTGTTCAGCTTCAAGTACGATGTTCGCATGCCTTGGTAC
GCCCGGTTCATCCTCGGAAAGAATATCATTTGGCACGACGTTCTTCACGC
CGACCCAGCCACAAAGGTATACTTGGGTGGTGCCGCTGGTGCTCGGTATA
CATCCGGCTCATGTATTGGTTTCCTTCCTCTGTTTTGAGTTTGATACGTG
ACGGATTGATAAATACTCTGGTGCAACGCATCTCAGTGCTGCTACTGCTG
ATTGTCAACACGCCAGATGCTTTCGGAAGACGGCATGAACATGAACCTGC
TACGTATGGGCACCGTGCGGGACTGTTCCTCGTGGCGAGCCTGCAATGAC
GACCCGAACGTGACCCTGTACAGCAAGCGCGTGGACTTTGAGATCCGGAT
GCCAGTGGGGCCGACAATCATGATGCAGGTGATCCTAGTAAAGTTAGTGC
GGTTGCTGACATCTCTTGTACACACTACCGTACATATGCTTCGAAGTTCA
AGGTAATTCATGAGTTGGAACGGCCTATCACACATTATTCGATGATCGAG
TGAGCCCCATGGTGTGGTTCACGTGCACAATTTGTCGTGTACCCGGTGCC
CGTATGTGTGGATGACTAGCAAGCAAACCTTGAGCTGTGCTGGACGTGCC
GAGGTTTGCACCTGCACTTGCAGTCGCAGCTCCAGCATCGACAAAGTCCC
GAGCCTACCGTGTTCAAACTCCCTGCCGTCGGCCCTCCGTGGCATCAACG
CCGAGAACGTTATGACCATATTGGCATGTGGCCTGTTTTTGGCTTAATCC
CCCTCGCCCGTGTATTTTTTGCAAGTTGCACCGCTGGTTCGATCCTCTGG
TGTAGTTCTCTGTTTGAACCCCCCTCGTAAACTCGTAAATCCAACCTGCT
TTCAGCGTGCTTCCCCCTCCCCTCCCTGTACTCTTAAGAGCACCCAATAC
TGGTGGTGACTACTGTATAAGGAATTCGAAATGAGAACGGTGCGCCTCGA
AAGGATTGCAAGCATGCGTGGTCAGTGGTCAAACGACGAAGGCACGCAAC
AATTGAGTGCACACACACACGCATCGTCCAAAAATTGTAATTTTCGTGGA
TGAGAATGAAAACGAGAGCCGTTTGATCGCGTCTGCACACCACATCAGTG
CGTGGAGAGAGACCCTTCGGGTGAAAGGGGCTCGAGCGACCTTGTGTCGG
GGGGGTAACGAGCAGCTGAATGGTTGAAAATGTGAATTCCCCTACCACCA
CCACCACCACCACCACCACCACCACCACCACCACTCCCTTCTACACCCAG
CACGCACCGCACTCCGCACACCGCACAACGACAGTCGCTGGAACACCCGC
CGTTGCCATTTGCTGCCGCCAACCAACAACCAACGCAGGTGGCGCAGCCA
CTCATGCAGTGGTTCAGGACCAAGAGCCACTTGTGCCGAGAGCTAGAGGT
GCAGTCTATCCGAGACTTCCTCGTATCCGAGAAGGGAGACACGCAGCAGG
AGCGAGCGAAGCGCATCGCGGACGATACGGCTTGGATGGCTGCCCTAACT
GCGGAGACCCCGGCGACTTCTTCTTCTACGCCGGCATCGTCGTCTTGTTC
CTCTCCTCCGTGTTGTTCCGAAGACGATCGGAGAGATTCAGCCGACGAGG
AGGAGGAGGAGGAGTCTCATGTACAGGTGCAAATGCGGCCCTCACTTAAG
AAACTCTTGTTTTATCCAAGGCTCGAGGCTTACTTTCTCTGTCGGGTAAC
CCGATAGCGACTGTATAGGTTTTAGCGCAGGATTATTGACGGAGCACCTA
TTTTCACGGCCAGGTTCTTCAATTTCGATTTTTCTTAGGCTGGATTTCTG
AACTGCCGGTTTCTTGAGTGGTGGCGGCATCTGCAATGTTTTGTTTTGAT
TGATTTATTCGTGGATCGATTCAAATCGTACCAGTTTTTATTTGTTCATT
CAAACCTATCGGTTTCTTTGCTTGTTCATTACTTCTGGTATTATTTCATT
GGTGTGATGTTCTTTGGATTTACTCCGTACATTTTTCGTGTGTATATATA
CGAAGTATATGTTTTTAGCTCCTTTGCACACATTGGACGAACGCACTAGC
TGCCCCGGCGTTCGGGGGGCCAAGTGCTATTCCAGTGCTATTCCTGTGCA
TGCGGATGTTGAGTGAAGAACATAGATTTGTATTTGAAAGTGCGTGCGTA
TACGTACAGGTGGGAGGCACACGTACCTCAAATGTGCGTGAATATTGAAC
TTCTTAGCGGAATAGCTTTGCGTGCGGTTCGGGAGGGAGGTCAAAAATTA
CGCATCCGCTTTGGCTGGCTGGCGCTTTCACGTTTTGGGACACGTATCAT
CGCCCCCCCCCCATACATCTTCTGCATCATTTGCTTTGATCGTTACCTGG
TATATTTTTATTTTTTTGTTTTCTGTTCTGCAGGTGTCGTCGCCTTGCTG
TTCTTCACCGTCGACGAACAACAAGCCTTCGACCAGAACGAGACTAGCAG
CAGGCTGGGCTAAGGTGAAACACCTGACCGCCAGAGCGAGGGAAAAGCTG
GCCAACGCGGCGGGTTCAAGCGCGGTGGCCGAGAGAAGACCACGGCCGCA
CACAGCAACGGCGGCGACCGCCACAGAGACTTCTACGGATCGGTTTGATT
CGGTGTAAAGATTCGATTCCGATTGTTCGCATCGTGTTTTTTTTTTTTAT
GCGGTTTGTGAAGACCCATCATACAAAAGTTTTTGACAATGTTATTTCAA
ATTGATTTTTTTAGTTTATTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:570665..575385-

>mRNA_P-littoralis_Contig8.132.1 ID=mRNA_P-littoralis_Contig8.132.1|Name=mRNA_P-littoralis_Contig8.132.1|organism=Pylaiella littoralis U1_48|type=CDS|length=963bp|location=Sequence derived from alignment at P-littoralis_Contig8:570665..575385- (Pylaiella littoralis U1_48)
ATGAGCGTGTCGCCGCAGCTGCTCGCTCTCATGGCCGTCACCCCGACTCG
CAGCAATGGTGCCACCTGTTGGTCCATCTTCATGGACTTCAGATATCCCT
TCCCCTGGGAGGTAACCGCTGCTTTTGTTTTGAGGGCGAAAGCTAAAGGA
CCCCCAGACGATATGGTGACTCTGGAGGTCGACCGCAACGTCTTCAAGTA
CGATGTTCGCATGCCTTGGTACGCCCGGTTCATCCTCGGAAAGAATATCA
TTTGGCACGACGTTCTTCACGCCGACCCAGCCACAAAGATGCTTTCGGAA
GACGGCATGAACATGAACCTGCTACGTATGGGCACCGTGCGGGACTGTTC
CTCGTGGCGAGCCTGCAATGACGACCCGAACGTGACCCTGTACAGCAAGC
GCGTGGACTTTGAGATCCGGATGCCAGTGGGGCCGACAATCATGATGCAG
GTGGCGCAGCCACTCATGCAGTGGTTCAGGACCAAGAGCCACTTGTGCCG
AGAGCTAGAGGTGCAGTCTATCCGAGACTTCCTCGTATCCGAGAAGGGAG
ACACGCAGCAGGAGCGAGCGAAGCGCATCGCGGACGATACGGCTTGGATG
GCTGCCCTAACTGCGGAGACCCCGGCGACTTCTTCTTCTACGCCGGCATC
GTCGTCTTGTTCCTCTCCTCCGTGTTGTTCCGAAGACGATCGGAGAGATT
CAGCCGACGAGGAGGAGGAGGAGGAGTCTCATGTACAGGTGTCGTCGCCT
TGCTGTTCTTCACCGTCGACGAACAACAAGCCTTCGACCAGAACGAGACT
AGCAGCAGGCTGGGCTAAGGTGAAACACCTGACCGCCAGAGCGAGGGAAA
AGCTGGCCAACGCGGCGGGTTCAAGCGCGGTGGCCGAGAGAAGACCACGG
CCGCACACAGCAACGGCGGCGACCGCCACAGAGACTTCTACGGATCGGTT
TGATTCGGTGTAA
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