mRNA_P-littoralis_Contig8.113.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.113.1
Unique NamemRNA_P-littoralis_Contig8.113.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig8.113.1 vs. uniprot
Match: D8LBJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBJ2_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.720e-15
Identity = 68/126 (53.97%), Postives = 77/126 (61.11%), Query Frame = 2 
Query:  833 STWVFRPPARVSSAEIDAMSRAQAVPNVDPVSSHRTT--EGSSSCNRAGRSNHIGGAEFTVSTQRIKDDSS--VDASFEDETEGGVASAXXXXXXXXRVGSLPSFPRTLPATSTKAPLNKKFAWVP 1198
            STW+  PP  V  ++    +   A    +PVSSH  T   GSSSC+    S H  GAEF VS QRI DDS    D+SF +         XXXXXXXXRVG+LPSFPRTLPAT  KAP NKKFAWVP
Sbjct:  108 STWIPNPPVMVRESDTTPKTHNSAA---EPVSSHPPTGASGSSSCH----SRH--GAEFAVSKQRIVDDSDSDTDSSFVEXXXXXXXXXXXXXXXXXRVGALPSFPRTLPATHGKAPFNKKFAWVP 224
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBJ2_ECTSI3.720e-1553.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:492982..494897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1916
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_003780.1
Cds size780
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791636.5548384-UTR-P-littoralis_Contig8:492981..4934021680791636.5548384-UTR-P-littoralis_Contig8:492981..493402Pylaiella littoralis U1_48UTRP-littoralis_Contig8 492982..493402 +
1680791636.5796797-UTR-P-littoralis_Contig8:494182..4948971680791636.5796797-UTR-P-littoralis_Contig8:494182..494897Pylaiella littoralis U1_48UTRP-littoralis_Contig8 494183..494897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791636.5678246-CDS-P-littoralis_Contig8:493402..4941821680791636.5678246-CDS-P-littoralis_Contig8:493402..494182Pylaiella littoralis U1_48CDSP-littoralis_Contig8 493403..494182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.113.1prot_P-littoralis_Contig8.113.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 493403..494182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.113.1

>prot_P-littoralis_Contig8.113.1 ID=prot_P-littoralis_Contig8.113.1|Name=mRNA_P-littoralis_Contig8.113.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=260bp
MRTAISYSSTNNFLLTLWSILQQTTKTWCSHAGVSFYKFALSFRKYSQTM
PRELTRPQARGSWWRRGGRRAACRGTCPFPPPDFGCQGGAQTIVNGFIAR
RPHTHLLCCAFDSYWVCAIPSLKFPLKNMTAMTRTNRSTWVFRPPARVSS
AEIDAMSRAQAVPNVDPVSSHRTTEGSSSCNRAGRSNHIGGAEFTVSTQR
IKDDSSVDASFEDETEGGVASAGGGGGGGGRVGSLPSFPRTLPATSTKAP
LNKKFAWVP*
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mRNA from alignment at P-littoralis_Contig8:492982..494897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.113.1 ID=mRNA_P-littoralis_Contig8.113.1|Name=mRNA_P-littoralis_Contig8.113.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1916bp|location=Sequence derived from alignment at P-littoralis_Contig8:492982..494897+ (Pylaiella littoralis U1_48)
GTTAACGCTCGGAGTGAGATCGACCAAGCTCGCGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTTTTTTAAGGTCACAATAATTAAATTATTCCTACTG
TACCGGTATCTGATTCTCACTTGTGTTCTCCGTCCTCTCTGGTACTCGGG
GCATCATAGAACCGGCCAGGTGACCAGAGAGAGGATACCCCTTCTCCCAC
ATACTTCTCCCTCTTTCTCTTTCTCCTCATAGCGTCACAGCAGCAGCGCG
TGTATTTCATGTGTTCATGTGAAGTCGCACAACTGCTGTTCCTTCTTTGT
TACGTGAGAAAGTTTAAGTGTTGTACTGCTGTACCGGGCATGTCAACTTC
GACCAATCGTTCGCTTCAAGGATTGCCTGCAGAAGAGGAACGAAACCTTC
ACTACATGGTGGACGTAACCGATGCGTACAGCAATATCATACAGCAGTAC
GAACAACTTTCTTCTCACTCTATGGTCGATATTGCAGCAAACAACAAAGA
CATGGTGCTCGCATGCCGGAGTGTCCTTCTACAAATTCGCCCTTTCTTTC
CGTAAATATAGTCAAACTATGCCAAGAGAGCTCACGAGGCCGCAGGCGCG
CGGGAGTTGGTGGAGGAGGGGTGGGAGGCGCGCGGCCTGTAGGGGCACTT
GTCCCTTCCCACCCCCCGACTTTGGTTGCCAAGGAGGAGCCCAAACCATA
GTCAATGGCTTTATAGCTCGCCGTCCCCATACTCATTTGCTGTGCTGCGC
TTTCGACTCATATTGGGTTTGTGCCATTCCATCACTAAAATTCCCATTGA
AAAACATGACTGCCATGACACGAACGAACAGATCGACATGGGTTTTCCGT
CCGCCAGCGAGAGTAAGCTCCGCAGAAATAGATGCGATGTCGCGCGCGCA
GGCCGTGCCGAACGTCGATCCTGTCAGCTCGCACCGGACAACGGAGGGCA
GCAGCAGCTGCAACCGGGCCGGCAGAAGCAACCACATCGGCGGTGCAGAG
TTTACCGTCTCCACGCAGCGAATTAAGGACGACAGCAGTGTCGACGCTTC
ATTTGAGGACGAGACAGAAGGTGGTGTCGCTAGTGCTGGTGGCGGCGGCG
GCGGTGGCGGTAGGGTTGGCTCCCTGCCGTCTTTCCCACGGACTCTCCCG
GCGACAAGCACGAAGGCCCCGCTCAACAAGAAGTTCGCCTGGGTTCCCTG
ATGGGACTTACTGCAGACAGCGATCCGATTGAGAATTTCAGAGTTCGGCC
CCTCCCTAGGGTGTCGTGGCGGCGCCCACTTTTGTTTGTTTCGACGTCCG
TGGTGGCGGGGCGAATTGGCACGAGGGGCGTGCTACGGAGATGACCGCCC
AGGAAGGAGACGTGAGCGGCTGCCCTCATTCCATGAGTCTACTTGTTTCA
CGGGGGGACGGGAGGTATTGCTGAGCGGTTGAGCTCGCCGCTTGCCCCTT
GTGAATTTCAAGATAAGATTGTCAAAAGCTACACAGGGAGTAACCTTGCT
GTCCCGAGTGCGATTGAGTTCCTCTCTCGGACATGCGTGGTCTCATTATG
GTGGGCATCGTATGATACAGTGTCACATGATAACGCTTTCGCGTCTCAAA
AGTAAAGTCTCTCTATTCTTCATTTTGATTAGGACTAATCGACCAAGATT
TATTCTGGTATGCAGAGCCAGTCTTGTCTTGTTCGTAGGCCGTCACCTCG
TGTTAAGTTACGTACGGGGCCGCTCGCTCAAGAGAGGTTCGTTCGAGAAC
TAGGTAAGCGAGAAGAGGGAATTATAGTTGGATTACAACCCCTCTCTATC
ATCCGGTAAATAATACTTCGTACGAAGTGGTTAAGTTTGTCGTTGGTGCA
GGTGTCACACATCTCGCGCTTTGCAAACACTCTAAGGAGAAGAGGCCTGA
CGTCGGGGCTGCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:492982..494897+

>mRNA_P-littoralis_Contig8.113.1 ID=mRNA_P-littoralis_Contig8.113.1|Name=mRNA_P-littoralis_Contig8.113.1|organism=Pylaiella littoralis U1_48|type=CDS|length=780bp|location=Sequence derived from alignment at P-littoralis_Contig8:492982..494897+ (Pylaiella littoralis U1_48)
ATGCGTACAGCAATATCATACAGCAGTACGAACAACTTTCTTCTCACTCT
ATGGTCGATATTGCAGCAAACAACAAAGACATGGTGCTCGCATGCCGGAG
TGTCCTTCTACAAATTCGCCCTTTCTTTCCGTAAATATAGTCAAACTATG
CCAAGAGAGCTCACGAGGCCGCAGGCGCGCGGGAGTTGGTGGAGGAGGGG
TGGGAGGCGCGCGGCCTGTAGGGGCACTTGTCCCTTCCCACCCCCCGACT
TTGGTTGCCAAGGAGGAGCCCAAACCATAGTCAATGGCTTTATAGCTCGC
CGTCCCCATACTCATTTGCTGTGCTGCGCTTTCGACTCATATTGGGTTTG
TGCCATTCCATCACTAAAATTCCCATTGAAAAACATGACTGCCATGACAC
GAACGAACAGATCGACATGGGTTTTCCGTCCGCCAGCGAGAGTAAGCTCC
GCAGAAATAGATGCGATGTCGCGCGCGCAGGCCGTGCCGAACGTCGATCC
TGTCAGCTCGCACCGGACAACGGAGGGCAGCAGCAGCTGCAACCGGGCCG
GCAGAAGCAACCACATCGGCGGTGCAGAGTTTACCGTCTCCACGCAGCGA
ATTAAGGACGACAGCAGTGTCGACGCTTCATTTGAGGACGAGACAGAAGG
TGGTGTCGCTAGTGCTGGTGGCGGCGGCGGCGGTGGCGGTAGGGTTGGCT
CCCTGCCGTCTTTCCCACGGACTCTCCCGGCGACAAGCACGAAGGCCCCG
CTCAACAAGAAGTTCGCCTGGGTTCCCTGA
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