mRNA_P-littoralis_Contig8.106.6 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: D8LBJ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBJ3_ECTSI) HSP 1 Score: 588 bits (1517), Expect = 2.820e-204 Identity = 399/565 (70.62%), Postives = 418/565 (73.98%), Query Frame = 2
Query: 89 MGIGASNPTKLERQFGGLGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGG--SSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYDCGE 1777
MG+GAS+ TKLER+FG +GDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLR LA++REED +G XXXXXXXXXXXX S +V+S+LAELFSSISNQKRRSGHLAPTEFLRTLRERN LFRGN QQDAHEFFNFVLNEMAD +VAR+K E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PRRSS WSKM S KG FGNG XXXXXXXXXXXXXXXX GE+AA G G+ + G S GETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLT+KNKFFCE+C ALQEAEKKIRLKRLPRVLTLHLKRFKYVESLE+FSKLSHRVVFPLELR PNMTDAAGEADADGRLYR LFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARP +AATNTGYLLLYDCGE
Sbjct: 1 MGVGASHQTKLEREFGDIGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREEDTSGGXXX--------------XXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------PRRSSTWSKMSSFKGSFGNGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGESAAG--------VDGGGGNARGNRRTSDGANESGGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTKKNKFFCETCYALQEAEKKIRLKRLPRVLTLHLKRFKYVESLENFSKLSHRVVFPLELRTPNMTDAAGEADADGRLYR-------LFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPASAATNTGYLLLYDCGE 500
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A835Z200_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z200_9STRA) HSP 1 Score: 375 bits (964), Expect = 1.060e-122 Identity = 239/565 (42.30%), Postives = 292/565 (51.68%), Query Frame = 2
Query: 89 MGIGASNPTKLERQFGGLGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRQEL-ARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMT-DAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYDCGE 1777
MG G+S+P+KLE+ G + ER++GLENFGNTCYCNSV+QALYFC PLR EL AR + + + TG +G S++ QLAELF+ I+N KR SG +AP F++TLRE N LFRGNMQQDAHEF+NF++N+MAD ++ RM + K+ Q A KT TW+H +FQGVLTN+TKC+CCETV++RDEPF+DL LD+EQN SV+ACLRNFS ETLT NKFFCE+C ALQEAEK++ L+RLPRVLTLHLKRFKY+E +++FSKLSHRVVFPLELR PNM D+A ADADG LY LFAVVVHIGRG NHGHYVAVVKS GRW+LFDD++VE+V+E VL + FGL+ +TNTGYLL YDCGE
Sbjct: 1 MGTGSSSPSKLEQDLGYTEPVEAGERYYGLENFGNTCYCNSVMQALYFCGPLRTELLARHTQNSSATVMATGSSQYPAG----------------------SLLYQLAELFAVITNTKRLSGRVAPQAFMQTLRETNELFRGNMQQDAHEFYNFIINDMADTLL----RM-------------------------------------------------------------------------------------------------SADKSGDQAAP-----------------------------------------------------------KT--------------TWIHDLFQGVLTNETKCICCETVTHRDEPFVDLPLDIEQNCSVTACLRNFSRMETLTGCNKFFCETCCALQEAEKRMCLRRLPRVLTLHLKRFKYMEQIQNFSKLSHRVVFPLELRMPNMARDSA--ADADGILYH-------LFAVVVHIGRGLNHGHYVAVVKSQGRWMLFDDDLVEVVDEAVLHKVFGLSNHLGGSTNTGYLLFYDCGE 360
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A388KQF3_CHABU (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KQF3_CHABU) HSP 1 Score: 311 bits (798), Expect = 4.660e-95 Identity = 215/561 (38.32%), Postives = 289/561 (51.52%), Query Frame = 2
Query: 104 SNPTKLERQFGGLGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGA--SSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGE---TWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYDC 1771
++ ++LE+ LG+ ER+FGLENFGNTCYCNSVLQALYFC P R+ L +D ++++ LA+LF I++QKR++G +AP F++ +++ N LFR M QDAHEF NF+LNE+AD + K + P SS S S GG + N ++ +G XXXXXXXXXXX G S+S ++ G AA+S +NG G SG TWVH IFQG LTN+TKCLCCETV+ RDE F+DLSLD+EQNSS+++CLRNFSSTETL ++KFFC+ C +LQEA+K++++K PR+L LHLKRFKY+E L + KLS+RVVFPLEL+ N TD A ++A+ LFAVVVH+G GPNHGHYV++VKS WL FDD+ VE ++E ++ FG + + T+ GY+L Y+C
Sbjct: 125 TSSSRLEKA---LGEFPECERYFGLENFGNTCYCNSVLQALYFCVPFREHLLEY-----------------------------FGKCKGFPEADENLLTCLADLFGQINSQKRKTGVIAPKRFVQRVKKENELFRSYMHQDAHEFLNFLLNELADILAREAKGISSLSGNGTNSANGGFT---------------------------------------------------------------PGTSSSAS---SRTGGANQPSVNNGRIPGSGGSXXXXXXXXXXXXXXGIGGKGLHISTSQSQLQFQSNVSGAGAASSA---------ANGLXXXXXXXRPNGMSGGPVVTWVHEIFQGTLTNETKCLCCETVTARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDRCCSLQEAQKRMKIKVPPRILALHLKRFKYIEQLGRYKKLSYRVVFPLELKLCNTTDDAPGSEAE----------YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLYFDDDNVEPIDESTVQTFFGSTQEMSNNTDHGYILFYEC 568
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A1Y1HV22_KLENI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HV22_KLENI) HSP 1 Score: 301 bits (772), Expect = 1.700e-93 Identity = 201/536 (37.50%), Postives = 268/536 (50.00%), Query Frame = 2
Query: 161 ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
E +FGLENFGNTCYCNSVLQALYFC P R++L + + + D +++S LA+LFS IS QK+++G +AP F++ L+++N LFR M QDAHEF NF+LNE+A+ + +K PR S + PS GG G G + +A XXXXXXXXXXXXXX GA G +TWVH IFQG++TN+T+CLCCET+++RDE F DLSLD+EQNSS+++CLRNFSSTETL +NKFFC+ C +LQEA+K++++K P++L LHLKRFKY+E L KL +RVVFPLELR N + A+A+ LF VVVH+G GPNHGHYV++VKS WL FDDE VE ++E +++ FG + + T+ GY+L Y+
Sbjct: 20 EHYFGLENFGNTCYCNSVLQALYFCAPFREKLLKYAAKIPKPVP----------------------------EPDETLLSSLADLFSQISTQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELAENLEKEEKA--------------------------------------------------------------------------------PRESE--APTPSTSGGHGEGEEFG---------KANXXXXXXXXXXXXXXKSGAQ--------------------------------------------GRQAKTWVHEIFQGLVTNETRCLCCETLTSRDETFFDLSLDIEQNSSITSCLRNFSSTETLNAENKFFCDKCCSLQEAQKRMKIKAAPQILALHLKRFKYIEQLGRHKKLMYRVVFPLELRLCNTVEGGDGAEAE----------YSLFGVVVHVGSGPNHGHYVSLVKSHSHWLFFDDESVEPIDESMVQSFFGSTQEYSNNTDHGYILFYE 382
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A176W0E8_MARPO (USP domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W0E8_MARPO) HSP 1 Score: 295 bits (754), Expect = 3.520e-91 Identity = 195/563 (34.64%), Postives = 269/563 (47.78%), Query Frame = 2
Query: 83 IVMGIGASNPTKLERQFGGLGDGDGQ-ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
+VMG S+ +KLE+ LGD + ER+FGLENFGNTCYCNSVLQALYFC P R +L E A+ G+G +D ++++ L+ELF+ I++QK+++G +AP F++ ++++N LFR M QDAHEF NF+LNE+ D + K + +S L G NG N + TWVH+IFQG LTN+T+CL CET++ RDE F+DLSLD+EQNSS+++CLRNFSSTETL ++KFFC+ C +LQEA+K++++K PR+L LHLKRFKY+E L + KLS+RVVFPLEL+ N TD A ++A+ LFAVVVH+G GPNHGHYV++VKS WL FDDE VE+++E V++ FG + + T+ GY+L Y+
Sbjct: 1 MVMG---SSGSKLEKA---LGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFRDQLL----EHASRSKGSG-------------------------ETDDNLLTCLSELFTQINSQKKKTGVIAPKRFVQRVKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAKASS-------------------------------------------------------------------------------KPTSGQVHPDKLANGTANGIANGNHPHPV-------------------------------------------------------------------------VTWVHKIFQGTLTNETRCLRCETITARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKSPPRILALHLKRFKYIEQLGRYKKLSYRVVFPLELKLCNTTDDAPGSEAE----------YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEIIDESVVQTFFGSTQEYSNNTDHGYILFYE 366
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A9RF40_PHYPA (Predicted protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A9RF40_PHYPA) HSP 1 Score: 294 bits (753), Expect = 4.810e-91 Identity = 197/559 (35.24%), Postives = 275/559 (49.19%), Query Frame = 2
Query: 95 IGASNPTKLERQFGGLGDGDGQ-ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
+GAS+ +KLE+ LGD + ER+FGLENFGNTCYCNSVLQALYFC P R++L G K S+ ++++ L+ELF+ I++QK+++G +AP F++ +R++N LFR M QDAHEF NF+LNE+ D +V +Q A++ S G+ +S K+ G T NG +G+ TWVH+IFQG LTN+T+CL CET++ RDE F+DLSLD+EQNSS+++CLRNFSSTETL ++KFFC+ C +LQEA+K++++K PR+L LHLKRFKY+E L + KLS+RVVFPLEL+ N TD A ++A+ LFAVVVH+G GPNHGHYV++VKS WL FDDE VE+++E +++ FG + + T+ GY+L Y+
Sbjct: 1 MGASS-SKLEKV---LGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEY-----------------CGQKK------------PVAESEENLLTCLSELFTQINSQKKKTGVIAPKRFVQRVRKQNELFRSYMHQDAHEFLNFLLNELVDILVKE-----------------------------------------------------------------------------------------------------------AQAANSNS--------------------GSHTSPEKVVGNGAT-------------------NGLANGNHK-----EPVVTWVHKIFQGTLTNETRCLRCETITARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKSPPRILALHLKRFKYIEQLGRYKKLSYRVVFPLELKLCNTTDDAPGSEAE----------YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEIIDESIVQTFFGSTQEYSNNTDHGYILFYE 365
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A484MYH1_9ASTE (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Convolvulaceae TaxID=4118 RepID=A0A484MYH1_9ASTE) HSP 1 Score: 294 bits (753), Expect = 6.370e-91 Identity = 184/536 (34.33%), Postives = 258/536 (48.13%), Query Frame = 2
Query: 161 ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
ER+FGLENFGNTCYCNSVLQALYFC P R++L + N ++D S+++ LA+LF IS+QK+++G +AP F++ L+++N +FR M QDAHEF N++LNE+ D + + R +SP S+ NG K SNG T+G+ TWVH+ FQG+LTN+T+CLCCETV+ RDE F DLSLD+EQNSS+++CL+NFSSTETL ++KFFC+ C +LQEA+K++++K+ P +L +HLKRFKY+E L + KLS+RVVFPLEL+ N + EADA+ LF+VVVH+G GPNHGHYV++VKS WL FDD+ VE+++E ++ FG A+ ++ T+ GY+L Y+
Sbjct: 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYSNNKN-----------------------------LADADESLLTCLADLFMQISSQKKKTGVIAPRRFVQKLKKQNEIFRSYMHQDAHEFLNYLLNELVDILEKESNAAKSD-----------------------------------------------------------------------------RETSPSSEN------VANGPK------------------------------------------------------------AILSNGHTNGNHK-----EPLVTWVHKNFQGILTNETRCLCCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVE---EADAE----------YSLFSVVVHVGTGPNHGHYVSLVKSHNHWLFFDDDSVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 365
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A2J6M691_LACSA (USP domain-containing protein n=12 Tax=asterids TaxID=71274 RepID=A0A2J6M691_LACSA) HSP 1 Score: 291 bits (746), Expect = 4.980e-90 Identity = 183/536 (34.14%), Postives = 252/536 (47.01%), Query Frame = 2
Query: 161 ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
ER+FGLENFGNTCYCNSVLQALYFC P R++L E+ N + + ++++ LAELF+ IS QK+++G +AP F++ +++ N LFRG M QDAHEF NF+LNE+ D + K + SSP K+P N + A V TWVH+ FQG+LTN+TKCL CETV+ RDE F+DLSLD+EQNSS+++CL+NFSSTETL ++KFFC+ C +LQEA+K++++K+ P +L +HLKRFKY+E L + KLS+RVVFPLEL+ +T+ +AD + LFAVVVH+G GPNHGHYV++VKS WL FDDE VE+++E ++ FG A+ + T+ GY+L Y+
Sbjct: 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYEKVKN------------------------------PDVEENLLTCLAELFTQISTQKKKTGVIAPKRFVQRVKKENELFRGYMHQDAHEFLNFLLNELVDILEKETKGTK-------------------------------------------------------------------------------EHSSPPEKIP-----------NGIHMPQANGVRKEPLV-----------------------------------------------------------------TWVHKNFQGILTNETKCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKQPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELK---LTNTMEDADCE----------YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTSFGSAQEYASNTDHGYILFYE 357
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: U5CXE6_AMBTC (USP domain-containing protein n=10 Tax=Magnoliopsida TaxID=3398 RepID=U5CXE6_AMBTC) HSP 1 Score: 291 bits (744), Expect = 8.450e-90 Identity = 184/536 (34.33%), Postives = 254/536 (47.39%), Query Frame = 2
Query: 161 ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
ER+FGLENFGNTCYCNSVLQALYFC P R++L G+N G ++D ++++ LAELFS I +QK+++G +AP F++ ++++N LFR M QDAHEF NF+LNE+ D + ++SP + PS K T N + V+ TWVH+ FQG+LTN+T+CL CETV+ RDE F+DLSLD+EQNSS+++CLRNFSSTETL ++KFFC+ C +LQEA+K++++K+ P +L +HLKRFKY+E L + KLS+RVVFPLEL+ N + DAD LFAVVVH+G GPNHGHYV++VKS WL FDDE VE+++E ++ FG A+ ++ T+ GY+L Y+
Sbjct: 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYY-----------GNNKTQG------------------DADDNLLTCLAELFSQICSQKKKTGVIAPKRFVQRVKKQNELFRSYMHQDAHEFLNFLLNELVDILEKESNAA---------------------------------------------------------------------------------KASPETSSPSEK------TANGPRSLQPNGVQKEPLV-----------------------------------------------------------------TWVHKNFQGILTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVE-----DADSEYS--------LFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 361
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A0D6R2R0_ARACU (USP domain-containing protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R2R0_ARACU) HSP 1 Score: 290 bits (743), Expect = 1.480e-89 Identity = 198/567 (34.92%), Postives = 272/567 (47.97%), Query Frame = 2
Query: 83 IVMGIGASNPTKLERQFGGLGDGDGQ-ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGM----VARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
+VMG S +LER LGD + ER+FGLENFGNTCYCNSVLQALYFC P R++L +KT G + ++++ LA+LF+ I +QK+++G +AP F++ ++++N LFR M QDAHEF NF+LNE+ D + +A KK L G N +QL NGK +G N T +WVH+IFQG LTN+T+CLCCET++ RDE F+DLSLD+EQNSS+++CLRNFSSTETL ++KFFC+ C +LQEA+K++++K PR+L +HLKRFKY+E L + KLS+RVVFP+E++ N TD A +DA+ LFAVVVH+G GPNHGHYV++VKS WL FDDE VE+++E V++ FG + + T+ GY+L Y+
Sbjct: 1 MVMGTTGS---RLERA---LGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYNR----------------TKTVGEV-------------EENLLTCLADLFTQIYSQKKKTGVIAPKRFVQRVKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAIAAKK---------------------------------------------------------------------------------------------LSG-------NITQLEKV-------------------------------------------------------VNGKANGATNGTH--QQPVSWVHKIFQGTLTNETRCLCCETITARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKIPPRILVIHLKRFKYIEQLGRYKKLSYRVVFPMEIKLCNTTDDAPGSDAE----------YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESVVQSFFGSTQEYSNNTDHGYILFYE 365 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig8.106.6 >prot_P-littoralis_Contig8.106.6 ID=prot_P-littoralis_Contig8.106.6|Name=mRNA_P-littoralis_Contig8.106.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=564bp MGIGASNPTKLERQFGGLGDGDGQERFFGLENFGNTCYCNSVLQALYFCEback to top mRNA from alignment at P-littoralis_Contig8:472900..478627+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig8.106.6 ID=mRNA_P-littoralis_Contig8.106.6|Name=mRNA_P-littoralis_Contig8.106.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=5728bp|location=Sequence derived from alignment at P-littoralis_Contig8:472900..478627+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig8:472900..478627+ >mRNA_P-littoralis_Contig8.106.6 ID=mRNA_P-littoralis_Contig8.106.6|Name=mRNA_P-littoralis_Contig8.106.6|organism=Pylaiella littoralis U1_48|type=CDS|length=1692bp|location=Sequence derived from alignment at P-littoralis_Contig8:472900..478627+ (Pylaiella littoralis U1_48)back to top |