mRNA_P-littoralis_Contig8.106.6 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.106.6
Unique NamemRNA_P-littoralis_Contig8.106.6
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: D8LBJ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBJ3_ECTSI)

HSP 1 Score: 588 bits (1517), Expect = 2.820e-204
Identity = 399/565 (70.62%), Postives = 418/565 (73.98%), Query Frame = 2
Query:   89 MGIGASNPTKLERQFGGLGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGG--SSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYDCGE 1777
            MG+GAS+ TKLER+FG +GDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLR  LA++REED +G                  XXXXXXXXXXXX S  +V+S+LAELFSSISNQKRRSGHLAPTEFLRTLRERN LFRGN QQDAHEFFNFVLNEMAD +VAR+K  E         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                    PRRSS WSKM S KG FGNG                XXXXXXXXXXXXXXXX                GE+AA              G   G+   + G   S GETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLT+KNKFFCE+C ALQEAEKKIRLKRLPRVLTLHLKRFKYVESLE+FSKLSHRVVFPLELR PNMTDAAGEADADGRLYR       LFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARP +AATNTGYLLLYDCGE
Sbjct:    1 MGVGASHQTKLEREFGDIGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREEDTSGGXXX--------------XXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------PRRSSTWSKMSSFKGSFGNGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGESAAG--------VDGGGGNARGNRRTSDGANESGGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTKKNKFFCETCYALQEAEKKIRLKRLPRVLTLHLKRFKYVESLENFSKLSHRVVFPLELRTPNMTDAAGEADADGRLYR-------LFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPASAATNTGYLLLYDCGE 500          
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A835Z200_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z200_9STRA)

HSP 1 Score: 375 bits (964), Expect = 1.060e-122
Identity = 239/565 (42.30%), Postives = 292/565 (51.68%), Query Frame = 2
Query:   89 MGIGASNPTKLERQFGGLGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRQEL-ARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMT-DAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYDCGE 1777
            MG G+S+P+KLE+  G     +  ER++GLENFGNTCYCNSV+QALYFC PLR EL AR  +  +  +  TG     +G                      S++ QLAELF+ I+N KR SG +AP  F++TLRE N LFRGNMQQDAHEF+NF++N+MAD ++    RM                                                                                                 +  K+  Q A                                                            KT              TW+H +FQGVLTN+TKC+CCETV++RDEPF+DL LD+EQN SV+ACLRNFS  ETLT  NKFFCE+C ALQEAEK++ L+RLPRVLTLHLKRFKY+E +++FSKLSHRVVFPLELR PNM  D+A  ADADG LY        LFAVVVHIGRG NHGHYVAVVKS GRW+LFDD++VE+V+E VL + FGL+     +TNTGYLL YDCGE
Sbjct:    1 MGTGSSSPSKLEQDLGYTEPVEAGERYYGLENFGNTCYCNSVMQALYFCGPLRTELLARHTQNSSATVMATGSSQYPAG----------------------SLLYQLAELFAVITNTKRLSGRVAPQAFMQTLRETNELFRGNMQQDAHEFYNFIINDMADTLL----RM-------------------------------------------------------------------------------------------------SADKSGDQAAP-----------------------------------------------------------KT--------------TWIHDLFQGVLTNETKCICCETVTHRDEPFVDLPLDIEQNCSVTACLRNFSRMETLTGCNKFFCETCCALQEAEKRMCLRRLPRVLTLHLKRFKYMEQIQNFSKLSHRVVFPLELRMPNMARDSA--ADADGILYH-------LFAVVVHIGRGLNHGHYVAVVKSQGRWMLFDDDLVEVVDEAVLHKVFGLSNHLGGSTNTGYLLFYDCGE 360          
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A388KQF3_CHABU (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KQF3_CHABU)

HSP 1 Score: 311 bits (798), Expect = 4.660e-95
Identity = 215/561 (38.32%), Postives = 289/561 (51.52%), Query Frame = 2
Query:  104 SNPTKLERQFGGLGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGA--SSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGE---TWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYDC 1771
            ++ ++LE+    LG+    ER+FGLENFGNTCYCNSVLQALYFC P R+ L                                         +D ++++ LA+LF  I++QKR++G +AP  F++ +++ N LFR  M QDAHEF NF+LNE+AD +    K +                                                                               P  SS  S   S  GG    + N  ++  +G     XXXXXXXXXXX     G   S+S  ++       G  AA+S          +NG           G SG    TWVH IFQG LTN+TKCLCCETV+ RDE F+DLSLD+EQNSS+++CLRNFSSTETL  ++KFFC+ C +LQEA+K++++K  PR+L LHLKRFKY+E L  + KLS+RVVFPLEL+  N TD A  ++A+            LFAVVVH+G GPNHGHYV++VKS   WL FDD+ VE ++E  ++  FG  +  +  T+ GY+L Y+C
Sbjct:  125 TSSSRLEKA---LGEFPECERYFGLENFGNTCYCNSVLQALYFCVPFREHLLEY-----------------------------FGKCKGFPEADENLLTCLADLFGQINSQKRKTGVIAPKRFVQRVKKENELFRSYMHQDAHEFLNFLLNELADILAREAKGISSLSGNGTNSANGGFT---------------------------------------------------------------PGTSSSAS---SRTGGANQPSVNNGRIPGSGGSXXXXXXXXXXXXXXGIGGKGLHISTSQSQLQFQSNVSGAGAASSA---------ANGLXXXXXXXRPNGMSGGPVVTWVHEIFQGTLTNETKCLCCETVTARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDRCCSLQEAQKRMKIKVPPRILALHLKRFKYIEQLGRYKKLSYRVVFPLELKLCNTTDDAPGSEAE----------YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLYFDDDNVEPIDESTVQTFFGSTQEMSNNTDHGYILFYEC 568          
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A1Y1HV22_KLENI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HV22_KLENI)

HSP 1 Score: 301 bits (772), Expect = 1.700e-93
Identity = 201/536 (37.50%), Postives = 268/536 (50.00%), Query Frame = 2
Query:  161 ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
            E +FGLENFGNTCYCNSVLQALYFC P R++L +   +    +                               D +++S LA+LFS IS QK+++G +AP  F++ L+++N LFR  M QDAHEF NF+LNE+A+ +   +K                                                                                 PR S   +  PS  GG G G +           +A XXXXXXXXXXXXXX  GA                                             G   +TWVH IFQG++TN+T+CLCCET+++RDE F DLSLD+EQNSS+++CLRNFSSTETL  +NKFFC+ C +LQEA+K++++K  P++L LHLKRFKY+E L    KL +RVVFPLELR  N  +    A+A+            LF VVVH+G GPNHGHYV++VKS   WL FDDE VE ++E +++  FG  +  +  T+ GY+L Y+
Sbjct:   20 EHYFGLENFGNTCYCNSVLQALYFCAPFREKLLKYAAKIPKPVP----------------------------EPDETLLSSLADLFSQISTQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELAENLEKEEKA--------------------------------------------------------------------------------PRESE--APTPSTSGGHGEGEEFG---------KANXXXXXXXXXXXXXXKSGAQ--------------------------------------------GRQAKTWVHEIFQGLVTNETRCLCCETLTSRDETFFDLSLDIEQNSSITSCLRNFSSTETLNAENKFFCDKCCSLQEAQKRMKIKAAPQILALHLKRFKYIEQLGRHKKLMYRVVFPLELRLCNTVEGGDGAEAE----------YSLFGVVVHVGSGPNHGHYVSLVKSHSHWLFFDDESVEPIDESMVQSFFGSTQEYSNNTDHGYILFYE 382          
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A176W0E8_MARPO (USP domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W0E8_MARPO)

HSP 1 Score: 295 bits (754), Expect = 3.520e-91
Identity = 195/563 (34.64%), Postives = 269/563 (47.78%), Query Frame = 2
Query:   83 IVMGIGASNPTKLERQFGGLGDGDGQ-ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
            +VMG   S+ +KLE+    LGD   + ER+FGLENFGNTCYCNSVLQALYFC P R +L     E A+   G+G                          +D ++++ L+ELF+ I++QK+++G +AP  F++ ++++N LFR  M QDAHEF NF+LNE+ D +    K                                                                                  + +S       L  G  NG  N +                                                                               TWVH+IFQG LTN+T+CL CET++ RDE F+DLSLD+EQNSS+++CLRNFSSTETL  ++KFFC+ C +LQEA+K++++K  PR+L LHLKRFKY+E L  + KLS+RVVFPLEL+  N TD A  ++A+            LFAVVVH+G GPNHGHYV++VKS   WL FDDE VE+++E V++  FG  +  +  T+ GY+L Y+
Sbjct:    1 MVMG---SSGSKLEKA---LGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFRDQLL----EHASRSKGSG-------------------------ETDDNLLTCLSELFTQINSQKKKTGVIAPKRFVQRVKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAKASS-------------------------------------------------------------------------------KPTSGQVHPDKLANGTANGIANGNHPHPV-------------------------------------------------------------------------VTWVHKIFQGTLTNETRCLRCETITARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKSPPRILALHLKRFKYIEQLGRYKKLSYRVVFPLELKLCNTTDDAPGSEAE----------YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEIIDESVVQTFFGSTQEYSNNTDHGYILFYE 366          
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A9RF40_PHYPA (Predicted protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A9RF40_PHYPA)

HSP 1 Score: 294 bits (753), Expect = 4.810e-91
Identity = 197/559 (35.24%), Postives = 275/559 (49.19%), Query Frame = 2
Query:   95 IGASNPTKLERQFGGLGDGDGQ-ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
            +GAS+ +KLE+    LGD   + ER+FGLENFGNTCYCNSVLQALYFC P R++L                     G K                 S+ ++++ L+ELF+ I++QK+++G +AP  F++ +R++N LFR  M QDAHEF NF+LNE+ D +V                                                                                                             +Q A++ S                    G+ +S  K+   G T                   NG  +G+           TWVH+IFQG LTN+T+CL CET++ RDE F+DLSLD+EQNSS+++CLRNFSSTETL  ++KFFC+ C +LQEA+K++++K  PR+L LHLKRFKY+E L  + KLS+RVVFPLEL+  N TD A  ++A+            LFAVVVH+G GPNHGHYV++VKS   WL FDDE VE+++E +++  FG  +  +  T+ GY+L Y+
Sbjct:    1 MGASS-SKLEKV---LGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEY-----------------CGQKK------------PVAESEENLLTCLSELFTQINSQKKKTGVIAPKRFVQRVRKQNELFRSYMHQDAHEFLNFLLNELVDILVKE-----------------------------------------------------------------------------------------------------------AQAANSNS--------------------GSHTSPEKVVGNGAT-------------------NGLANGNHK-----EPVVTWVHKIFQGTLTNETRCLRCETITARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKSPPRILALHLKRFKYIEQLGRYKKLSYRVVFPLELKLCNTTDDAPGSEAE----------YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEIIDESIVQTFFGSTQEYSNNTDHGYILFYE 365          
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A484MYH1_9ASTE (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Convolvulaceae TaxID=4118 RepID=A0A484MYH1_9ASTE)

HSP 1 Score: 294 bits (753), Expect = 6.370e-91
Identity = 184/536 (34.33%), Postives = 258/536 (48.13%), Query Frame = 2
Query:  161 ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
            ER+FGLENFGNTCYCNSVLQALYFC P R++L      + N                               ++D S+++ LA+LF  IS+QK+++G +AP  F++ L+++N +FR  M QDAHEF N++LNE+ D +       +                                                                               R +SP S+         NG K                                                               SNG T+G+           TWVH+ FQG+LTN+T+CLCCETV+ RDE F DLSLD+EQNSS+++CL+NFSSTETL  ++KFFC+ C +LQEA+K++++K+ P +L +HLKRFKY+E L  + KLS+RVVFPLEL+  N  +   EADA+            LF+VVVH+G GPNHGHYV++VKS   WL FDD+ VE+++E  ++  FG A+  ++ T+ GY+L Y+
Sbjct:   20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYSNNKN-----------------------------LADADESLLTCLADLFMQISSQKKKTGVIAPRRFVQKLKKQNEIFRSYMHQDAHEFLNYLLNELVDILEKESNAAKSD-----------------------------------------------------------------------------RETSPSSEN------VANGPK------------------------------------------------------------AILSNGHTNGNHK-----EPLVTWVHKNFQGILTNETRCLCCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVE---EADAE----------YSLFSVVVHVGTGPNHGHYVSLVKSHNHWLFFDDDSVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 365          
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A2J6M691_LACSA (USP domain-containing protein n=12 Tax=asterids TaxID=71274 RepID=A0A2J6M691_LACSA)

HSP 1 Score: 291 bits (746), Expect = 4.980e-90
Identity = 183/536 (34.14%), Postives = 252/536 (47.01%), Query Frame = 2
Query:  161 ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
            ER+FGLENFGNTCYCNSVLQALYFC P R++L    E+  N                               + + ++++ LAELF+ IS QK+++G +AP  F++ +++ N LFRG M QDAHEF NF+LNE+ D +    K  +                                                                                 SSP  K+P           N   +  A  V                                                                       TWVH+ FQG+LTN+TKCL CETV+ RDE F+DLSLD+EQNSS+++CL+NFSSTETL  ++KFFC+ C +LQEA+K++++K+ P +L +HLKRFKY+E L  + KLS+RVVFPLEL+   +T+   +AD +            LFAVVVH+G GPNHGHYV++VKS   WL FDDE VE+++E  ++  FG A+   + T+ GY+L Y+
Sbjct:   20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYEKVKN------------------------------PDVEENLLTCLAELFTQISTQKKKTGVIAPKRFVQRVKKENELFRGYMHQDAHEFLNFLLNELVDILEKETKGTK-------------------------------------------------------------------------------EHSSPPEKIP-----------NGIHMPQANGVRKEPLV-----------------------------------------------------------------TWVHKNFQGILTNETKCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKQPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELK---LTNTMEDADCE----------YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTSFGSAQEYASNTDHGYILFYE 357          
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: U5CXE6_AMBTC (USP domain-containing protein n=10 Tax=Magnoliopsida TaxID=3398 RepID=U5CXE6_AMBTC)

HSP 1 Score: 291 bits (744), Expect = 8.450e-90
Identity = 184/536 (34.33%), Postives = 254/536 (47.39%), Query Frame = 2
Query:  161 ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGMVARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
            ER+FGLENFGNTCYCNSVLQALYFC P R++L               G+N   G                  ++D ++++ LAELFS I +QK+++G +AP  F++ ++++N LFR  M QDAHEF NF+LNE+ D +                                                                                        ++SP +  PS K      T N  +      V+                                                                      TWVH+ FQG+LTN+T+CL CETV+ RDE F+DLSLD+EQNSS+++CLRNFSSTETL  ++KFFC+ C +LQEA+K++++K+ P +L +HLKRFKY+E L  + KLS+RVVFPLEL+  N  +     DAD            LFAVVVH+G GPNHGHYV++VKS   WL FDDE VE+++E  ++  FG A+  ++ T+ GY+L Y+
Sbjct:   20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYY-----------GNNKTQG------------------DADDNLLTCLAELFSQICSQKKKTGVIAPKRFVQRVKKQNELFRSYMHQDAHEFLNFLLNELVDILEKESNAA---------------------------------------------------------------------------------KASPETSSPSEK------TANGPRSLQPNGVQKEPLV-----------------------------------------------------------------TWVHKNFQGILTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVE-----DADSEYS--------LFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 361          
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Match: A0A0D6R2R0_ARACU (USP domain-containing protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R2R0_ARACU)

HSP 1 Score: 290 bits (743), Expect = 1.480e-89
Identity = 198/567 (34.92%), Postives = 272/567 (47.97%), Query Frame = 2
Query:   83 IVMGIGASNPTKLERQFGGLGDGDGQ-ERFFGLENFGNTCYCNSVLQALYFCEPLRQELARMREEDANGLSGTGGDNSRSGSKTGGXXXXXXXXXXXXXNSDVSVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEFFNFVLNEMADGM----VARKKRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAXXXXXXXXXXXXXXXXGASSSGVKIDVGGTTVGETAAASXXXXXXXXXXSNGKTDGDDNITGGGSSGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAATNTGYLLLYD 1768
            +VMG   S   +LER    LGD   + ER+FGLENFGNTCYCNSVLQALYFC P R++L                      +KT G               + ++++ LA+LF+ I +QK+++G +AP  F++ ++++N LFR  M QDAHEF NF+LNE+ D +    +A KK                                                                                             L G       N +QL                                                           NGK +G  N T       +WVH+IFQG LTN+T+CLCCET++ RDE F+DLSLD+EQNSS+++CLRNFSSTETL  ++KFFC+ C +LQEA+K++++K  PR+L +HLKRFKY+E L  + KLS+RVVFP+E++  N TD A  +DA+            LFAVVVH+G GPNHGHYV++VKS   WL FDDE VE+++E V++  FG  +  +  T+ GY+L Y+
Sbjct:    1 MVMGTTGS---RLERA---LGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYNR----------------TKTVGEV-------------EENLLTCLADLFTQIYSQKKKTGVIAPKRFVQRVKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAIAAKK---------------------------------------------------------------------------------------------LSG-------NITQLEKV-------------------------------------------------------VNGKANGATNGTH--QQPVSWVHKIFQGTLTNETRCLCCETITARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKIPPRILVIHLKRFKYIEQLGRYKKLSYRVVFPMEIKLCNTTDDAPGSDAE----------YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESVVQSFFGSTQEYSNNTDHGYILFYE 365          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.106.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBJ3_ECTSI2.820e-20470.62Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A835Z200_9STRA1.060e-12242.30Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A388KQF3_CHABU4.660e-9538.32Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Char... [more]
A0A1Y1HV22_KLENI1.700e-9337.50Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Kleb... [more]
A0A176W0E8_MARPO3.520e-9134.64USP domain-containing protein n=2 Tax=Marchantia p... [more]
A9RF40_PHYPA4.810e-9135.24Predicted protein n=5 Tax=Physcomitrium patens Tax... [more]
A0A484MYH1_9ASTE6.370e-9134.33Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Conv... [more]
A0A2J6M691_LACSA4.980e-9034.14USP domain-containing protein n=12 Tax=asterids Ta... [more]
U5CXE6_AMBTC8.450e-9034.33USP domain-containing protein n=10 Tax=Magnoliopsi... [more]
A0A0D6R2R0_ARACU1.480e-8934.92USP domain-containing protein n=1 Tax=Araucaria cu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:472900..478627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBJ3
Preferred nameUSP46
PFAMsUCH
Model size1780
Max annot lvl2759|Eukaryota
KEGG koko:K11842,ko:K11872
Hectar predicted targeting categoryother localisation
GOsGO:0000578,GO:0001662,GO:0002209,GO:0002682,GO:0002684,GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0007154,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007584,GO:0007610,GO:0007631,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008343,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009636,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010469,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010992,GO:0010995,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019783,GO:0019941,GO:0022411,GO:0022898,GO:0023051,GO:0023056,GO:0023057,GO:0030163,GO:0030534,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0031982,GO:0032228,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033555,GO:0034762,GO:0034765,GO:0035254,GO:0035255,GO:0035282,GO:0035871,GO:0036211,GO:0036459,GO:0036477,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042592,GO:0042596,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043412,GO:0043624,GO:0043632,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045013,GO:0045471,GO:0045746,GO:0045892,GO:0045934,GO:0045990,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048520,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050795,GO:0050804,GO:0050854,GO:0050856,GO:0050857,GO:0050862,GO:0050896,GO:0051049,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051261,GO:0051603,GO:0051716,GO:0060004,GO:0060013,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071108,GO:0071496,GO:0071704,GO:0071840,GO:0071947,GO:0080090,GO:0090325,GO:0090326,GO:0097305,GO:0097458,GO:0097708,GO:0098657,GO:0099177,GO:0099601,GO:0101005,GO:0140096,GO:1900449,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:1904062,GO:2000112,GO:2000113,GO:2000311,GO:2001141,GO:2001257
Exons7
Evalue1.14e-205
EggNOG OGsKOG1864@1|root,KOG1864@2759|Eukaryota
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-27_003770.1
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size1692
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.106.6prot_P-littoralis_Contig8.106.6Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 472988..478627 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791636.4034646-UTR-P-littoralis_Contig8:472899..4729871680791636.4034646-UTR-P-littoralis_Contig8:472899..472987Pylaiella littoralis U1_48UTRP-littoralis_Contig8 472900..472987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791636.4168565-CDS-P-littoralis_Contig8:472987..4731191680791636.4168565-CDS-P-littoralis_Contig8:472987..473119Pylaiella littoralis U1_48CDSP-littoralis_Contig8 472988..473119 +
1680791636.4353766-CDS-P-littoralis_Contig8:473923..4742261680791636.4353766-CDS-P-littoralis_Contig8:473923..474226Pylaiella littoralis U1_48CDSP-littoralis_Contig8 473924..474226 +
1680791636.4474761-CDS-P-littoralis_Contig8:474767..4754541680791636.4474761-CDS-P-littoralis_Contig8:474767..475454Pylaiella littoralis U1_48CDSP-littoralis_Contig8 474768..475454 +
1680791636.4636426-CDS-P-littoralis_Contig8:476106..4762531680791636.4636426-CDS-P-littoralis_Contig8:476106..476253Pylaiella littoralis U1_48CDSP-littoralis_Contig8 476107..476253 +
1680791636.4804652-CDS-P-littoralis_Contig8:476774..4769861680791636.4804652-CDS-P-littoralis_Contig8:476774..476986Pylaiella littoralis U1_48CDSP-littoralis_Contig8 476775..476986 +
1680791636.492131-CDS-P-littoralis_Contig8:477242..4773661680791636.492131-CDS-P-littoralis_Contig8:477242..477366Pylaiella littoralis U1_48CDSP-littoralis_Contig8 477243..477366 +
1680791636.5196843-CDS-P-littoralis_Contig8:478540..4786271680791636.5196843-CDS-P-littoralis_Contig8:478540..478627Pylaiella littoralis U1_48CDSP-littoralis_Contig8 478541..478627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.106.6

>prot_P-littoralis_Contig8.106.6 ID=prot_P-littoralis_Contig8.106.6|Name=mRNA_P-littoralis_Contig8.106.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=564bp
MGIGASNPTKLERQFGGLGDGDGQERFFGLENFGNTCYCNSVLQALYFCE
PLRQELARMREEDANGLSGTGGDNSRSGSKTGGSASGGGGGGGGGGNSDV
SVMSQLAELFSSISNQKRRSGHLAPTEFLRTLRERNGLFRGNMQQDAHEF
FNFVLNEMADGMVARKKRMEEAATVLEHKKRFQQSGSHHRQTLSKSNSNS
NGSSSSSSSSSSSQQQQQQQQQQQQQQQQQHRSNQNNQTTSAQQQQQDPR
RSSPWSKMPSLKGGFGNGTKNASQLASAGSVEAAAATATGEREGEGAGDG
GASSSGVKIDVGGTTVGETAAASAPAAEGAGIGSNGKTDGDDNITGGGSS
GETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLR
NFSSTETLTRKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYVES
LESFSKLSHRVVFPLELRAPNMTDAAGEADADGRLYRRVRLLLLLFAVVV
HIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPETAA
TNTGYLLLYDCGE*
back to top

mRNA from alignment at P-littoralis_Contig8:472900..478627+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.106.6 ID=mRNA_P-littoralis_Contig8.106.6|Name=mRNA_P-littoralis_Contig8.106.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=5728bp|location=Sequence derived from alignment at P-littoralis_Contig8:472900..478627+ (Pylaiella littoralis U1_48)
ATTCACCTCTCTGCTGCAATTCGTGTCGATGATACATATGTATGATACAC ACACACCGGGTGCTTGACATATCTCCGTTCCTATTGTCATGGGTATCGGG GCGTCGAATCCGACCAAGCTAGAACGTCAATTCGGCGGCCTAGGAGATGG TGACGGGCAGGAGAGATTCTTCGGCCTGGAGAACTTCGGCAACACTTGCT ACTGCAACTCAGTTCTCCAGGTACAGCAGTAGACAAGTCTTGTCTTTGGA TTTGTATCACGAAACACACGGAGAGTCCTACAAACGGAAGTACTCGCGGT GACTGCCGTGTCGCTCGCTGTCTGCGGGGGCAGCAGACCGGCACCACTAA CGAGTTACGTGGTTTTATCTCTAGTGACGTCCATCGTGATGAAGGGCTGG GGAAAAGCGCACTTCTCATCGATTTGCACATGTCACAGCAGCAGTGTCTT TGAATGTCCCGTCCTGTTCGAAGCACTAGATGTTGGTATCATATAATATG ATGTGTAGTGTACTTTGGGAGCTTTCGTAGACCGCGGTTATGATACAAGG GTACGACCCTCTGCGTCAAGCCTTTCTCCTTCGCAAATGTACCCTCCGAG CGTCAGTTCTTGGCACGTCGCCCATCTGGTATTCGCAAACTATCGGAGTG TTGATGCTGAATTTAGCAAAATAGAGGCGTGGCGGGTGATTGTCGCCAGT TTTCCCGCGGCCTCCAATCATACGCCTTCTGCTGTACGATGTAATTTCAG GACTTGTTTGTTTGGGACTCTGGATTCGTACAGCAAAACTGCTGTCTGCT GTGAACTGCTGGGTACTGCTGTCGAGACCCCTCTTTATTTTGGCAGTTGG ACCCTATCTCACGATCAACAGAAGGAGTAGTGACAGACTCGAGGTACTCC CACGTCTACCTTGCTGTCCCCCATCAAACAACCAACGACGGGCTGATGAA TAATGTGGTGGGGGATCCATCATCTAGTAATTTCCTCTCAACAAACACGA TGGCTCCAACCAAACATGAAATAGGCTCTATACTTTTGCGAGCCGTTGCG GCAAGAGCTTGCTCGAATGCGAGAGGAAGACGCAAACGGCTTGAGCGGCA CCGGCGGAGACAACAGCAGGAGTGGCAGCAAGACGGGTGGCAGTGCTAGT GGTGGAGGAGGAGGTGGGGGTGGGGGCGGCAACAGCGACGTCAGCGTCAT GTCGCAGCTGGCGGAGCTATTCTCGTCAATCTCCAATCAGAAGCGTCGTT CTGGACACCTTGCGCCCACCGAGTTCCTCCGCACGTTGAGGGAGCGGAAT GGGCTGTTTCGTGGTAACATGCAGCAGGTGATCTGCTTTGCTGTGGTGTG CTGTGTTTGTGTGGCGTTAAAAATAAAAGTGGTCGAAAAAGCCGTGTGCT ATGGTAGTTAGAGGGTCATCGTGATGCCAATCAATCAAGCAGAGGGTGGC GGTGTGATAAAACAAGTTGCGTGGCAGAGGACAGAGTGTACAGGAGGCCA CAACACGCCTCCCTGCTGACTGCTGACGCAAACAGTACTCGGATTGACTG GCCTTTGGTTGGGTTGTGTGGGTTGTGTGTGCAGAAAAAAAACGCTTTGG TTTCGCACGGGCATTGCGTCTGCAGCCCGTGGAGCAGCTCGCCGTTTTGT TGACCGCCGACTGTTTGTATTTTTTCCACGGCCCATGCCGCCACCAGCTG TACCCTCTTGGGGTTTGCATATGCGTCGGCATTTCACTTTAGCGCCCACG CGTAGTCGTCTCTTGCCATTCGAGATGAAAGAAGCCTCTCGAGGAAGTTT GGTGTTACCCTTTTATCAACCACACAAGACTCCCTACCCCGACGTTAAAC TTGGAAAAACGAAATCAGGACGCACACGAGTTCTTCAATTTCGTCCTTAA TGAGATGGCGGACGGCATGGTGGCTAGGAAGAAGCGGATGGAGGAGGCGG CCACAGTACTCGAGCACAAGAAACGCTTCCAACAAAGTGGCAGCCACCAC CGACAAACGCTGAGCAAAAGCAATAGCAATAGCAATGGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCCAGCAACAACAACAACAACAACAACAAC AACAACAACAACAACAACAACAACACAGAAGCAACCAAAATAACCAGACA ACCTCTGCCCAGCAGCAGCAACAAGATCCGCGGCGGTCCTCTCCGTGGTC AAAGATGCCATCCCTCAAGGGCGGTTTCGGCAACGGGACGAAGAACGCCT CTCAGTTGGCATCGGCAGGGTCGGTGGAGGCAGCAGCAGCAACAGCAACA GGAGAGAGAGAAGGAGAGGGAGCCGGAGATGGAGGGGCTTCATCGTCAGG GGTAAAGATCGACGTAGGCGGAACAACGGTCGGCGAGACGGCCGCGGCGT CAGCACCGGCGGCGGAGGGGGCGGGGATCGGCAGCAACGGGAAGACCGAC GGGGATGACAACATTACAGGTGGCGGGTCTTCGGGGGAGACGTGGGTACA CCGGATTTTTCAGGGGGTTCTGACGAACCAGACCAAGTGCCTCTGCTGCG AGACGGTACGTTTGGTTTGGTTGTGTCGGGGTATCTTCTTTTGGTTGAGC GAGTTGGTTTGCTGTGACTTGGGTGTGTCGTCGAGCGTATTTGCGTGATC TGACGCGACCCTCCTCTCGTATCATACTGAGCATATGTGTAAGGCGCCAT CGACCTCTCCAGACAAAACAATTGGCACATCAAATCGGTGTCCGCGGATG CTTTTTAACTTGGCTGTCGCAACCACTGCGGCCCCTGCGCCCATGTAGAT TCCCCCTTTACTTTCCGTGGCAATGCTGTCGTATACAATGTAGTTTATCC TGGAAAGCACGGCACCAGTGTGCATGACCTGAGGTGTAGCTCGAGGATCG GGGGGGGGGGGTGGCCCCTCCGTCCCAACCGGCTGGTGACATATCGTAAC GACCGATGTTGTAAAAAACTCCACGGCAACACTCCTAGCGGGCGGTGCCA AAACCCCTTCCTCCTGTCTCCGGTCTAAGAGCTAACCTTTTCAGTATCTC AATCCGTCCCGATATCACCGTCGCCGCAGTCCACTGGCACAAGAGCTACT GCTGTGCACGGAGGTACATCCTGGATTTTCATGTGATTAAAATTGTCGTC CTCACCTCCTTCGGGTCGTTGTACTCCTGCAACGCCATGTCAAATCGTAC ATTGTAGGTGAGCAATCGAGACGAGCCGTTTATGGACTTGTCCCTGGACG TGGAGCAGAACTCGTCGGTGTCGGCGTGCCTGAGGAACTTCAGCAGCACC GAAACCCTTACCAGGAAGAACAAGTTCTTCTGCGAGAGCTGCAACGCGCT GCAAGTGCGTTGAAGTGATTTACATGAATTTTCTGTGGCAAGTAGGAGAG CATTGCGTGCCTGCATTTGATATCTATGGTGTAAACCTTTCTTCTATTCT TTTGCACACTTTTTTCATTGAAGTTTGTCTGTTATTTCGGCTCGCTGCTG TGCTTTTTCGTTTTCATATGAGGTCCTCACTGCTGTTGTTGTTGTTCTTG GGGTTGGTGTCGCCAGTGTTATACTCGTTTTTTCGCTTTTTTCCCTGAAT GCGTGCACGCAGATACTTTCTCCCGCTTCGCAGAACCAACACTGTAGATT AAAACCTCCACCCCACGGGCTTCCTTCCTTGCCGGAAGCCAATCCACACC GGAAACAACGAACCCCAAGAGGAGAACAAAAACCAAAACATGCGCACACA CAGACACACAAGAGAACAACACACACGGACAACACCACCACCACCACCAC CACCACCAACAACAACAACCACAACCACAACAACAACAACAACAACAACA ACAACAACGACGACGACAACAACAGGAGGCCGAGAAGAAGATTCGGCTGA AGCGACTGCCGCGGGTTCTAACCCTGCACCTCAAGCGCTTCAAGTACGTC GAGTCGTTGGAAAGCTTCTCCAAGCTGTCGCACAGGGTCGTCTTTCCCCT CGAGCTCCGAGCGCCAAACATGACGGACGCAGCCGGCGAGGCGGATGCGG ACGGTCGACTCTACAGGCGAGTTCGTCTTCTGCTTTTGTTGTTGGCAGGG GAACGGGGAACTGGGAAGGAAGGTAGTCAAGGAGGGGGCGCGCGAGGGGT AGAGGGGATGGGGGAAATAGGGCTCGTTATTCAGTATTCGTGCTTCGCTT TAGCTCGACTAGCAGCCAATTGACGGAGGGGCATTCTCTCACTGAAACGG CGCATGTTTGTATTGCTGCTGCTGCTGCTGCTGCTAAAAATTCGACCAAA CCGAACCCGGAAACGAAACGAAAACGAAAACAAAACGAAGCAGGCTGTTT GCCGTTGTCGTACACATCGGTCGTGGTCCCAACCATGGGCACTACGTGGC GGTAGTCAAGTCAGGAGGTCGCTGGCTGCTGTTCGACGACGAGATCGTGG AGCTCGTTAACGAACAGGTGTGTGTGTGTGTTGTGTGTTGTCTGTGCGTC TTATGTGCATGCATGTATCACACCAGACAGTTTTTGTTCACCGCAGGACA GTGGCCAAAATCGGGTACAACACCCAATTACTTTTCGGCCAATATCGGGT GCTCTTCTGTTTGCGCCACTGCAATGACCTCAGGACGCCATCTCATTAAC CAAGGCAGGCCGCCACCCGGCGTCGGCCACTTTTTGGCCATGTATACCCA GTCGTGGCTACGCAACCCGTTGAGGTGCCCAATCTTCACACACACCGTAC CCGAAAATGGCCAGGCATACACGGGGCTTCGACGCCACACCTGTCACCGC GCCATTCAATACGCCGCAAGCAACCGACGGCGGTTCTCCCTAACGTTTTT TGCCTGAATTTGATACGTCTTTATCCCCTAGTTTCGCTTCCTCTCTCTTA CCTCTATCTCTGAAGCAAAAACCACTCACTGCTGTCCAGCCACTTTCATT ATCACCCAGCATAGTAGTTGCTCAGCATAGTCGTGAGCGTGAGGGACGAT GCCACACAATTATTTTGTGTTCCCGACGGAAAAGTGACCAGAATCGGGTG ACGGCCTGCCTTGACCAATGAGATGGCATCTTGGAACCCTTTCTGTCGCT CGAAAACGCCGGGTACCTGATAATGGCCGAAAGGTAGACGGGTACGTACA GCGTACCCCATTTTGGCCACTGCTTGTGTTGAAATCCCATTCAGAAGTTT TTTTTTTAAACTGAGTTAATAAAGGTAAGTCTACGCTCAGGCGCGTAGGT GCTGCGGATACTCCCGTTTTTTCGCTAATCCAGAAGCGAGCGTGGTCACT GTTTGGTTGTTTGTTTGTTGTCGGACGTGGCTGTTCCTCCCTCGCCCTCC TCTTCGTCTTCTCGCCCCTTCGCCCCTTCGGTGGGAGTGTTGAACGAATG ACGCACGTATCCCTGTCCGATTTCGTTCGAAAGGAAATTACAAAAGTCTG CGCTCCCCTCATTGGTTGTCGTCAAGTCAGCTTGAAGGTCTCACAGCAGG TTGTTTGGCTTCATCTATAAGATGTGTGTCATATTTGCCCACTTCTTGTT TTATTCCACACACCGCAATGCCGATGTCTTACTCATTGCTCTCGGGACGT TCTTTGGGTTTACCCTTCGTCTGTTTCTCGGGCTTGCCCAGGTTCTCAAG CAGTGCTTTGGGCTAGCACGCCCAGAGACGGCCGCCACCAACACAGGGTA CCTCTTGCTGTATGACTGCGGCGAGTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig8:472900..478627+

>mRNA_P-littoralis_Contig8.106.6 ID=mRNA_P-littoralis_Contig8.106.6|Name=mRNA_P-littoralis_Contig8.106.6|organism=Pylaiella littoralis U1_48|type=CDS|length=1692bp|location=Sequence derived from alignment at P-littoralis_Contig8:472900..478627+ (Pylaiella littoralis U1_48)
ATGGGTATCGGGGCGTCGAATCCGACCAAGCTAGAACGTCAATTCGGCGG
CCTAGGAGATGGTGACGGGCAGGAGAGATTCTTCGGCCTGGAGAACTTCG
GCAACACTTGCTACTGCAACTCAGTTCTCCAGGCTCTATACTTTTGCGAG
CCGTTGCGGCAAGAGCTTGCTCGAATGCGAGAGGAAGACGCAAACGGCTT
GAGCGGCACCGGCGGAGACAACAGCAGGAGTGGCAGCAAGACGGGTGGCA
GTGCTAGTGGTGGAGGAGGAGGTGGGGGTGGGGGCGGCAACAGCGACGTC
AGCGTCATGTCGCAGCTGGCGGAGCTATTCTCGTCAATCTCCAATCAGAA
GCGTCGTTCTGGACACCTTGCGCCCACCGAGTTCCTCCGCACGTTGAGGG
AGCGGAATGGGCTGTTTCGTGGTAACATGCAGCAGGACGCACACGAGTTC
TTCAATTTCGTCCTTAATGAGATGGCGGACGGCATGGTGGCTAGGAAGAA
GCGGATGGAGGAGGCGGCCACAGTACTCGAGCACAAGAAACGCTTCCAAC
AAAGTGGCAGCCACCACCGACAAACGCTGAGCAAAAGCAATAGCAATAGC
AATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGCAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACACAGAAGCA
ACCAAAATAACCAGACAACCTCTGCCCAGCAGCAGCAACAAGATCCGCGG
CGGTCCTCTCCGTGGTCAAAGATGCCATCCCTCAAGGGCGGTTTCGGCAA
CGGGACGAAGAACGCCTCTCAGTTGGCATCGGCAGGGTCGGTGGAGGCAG
CAGCAGCAACAGCAACAGGAGAGAGAGAAGGAGAGGGAGCCGGAGATGGA
GGGGCTTCATCGTCAGGGGTAAAGATCGACGTAGGCGGAACAACGGTCGG
CGAGACGGCCGCGGCGTCAGCACCGGCGGCGGAGGGGGCGGGGATCGGCA
GCAACGGGAAGACCGACGGGGATGACAACATTACAGGTGGCGGGTCTTCG
GGGGAGACGTGGGTACACCGGATTTTTCAGGGGGTTCTGACGAACCAGAC
CAAGTGCCTCTGCTGCGAGACGGTGAGCAATCGAGACGAGCCGTTTATGG
ACTTGTCCCTGGACGTGGAGCAGAACTCGTCGGTGTCGGCGTGCCTGAGG
AACTTCAGCAGCACCGAAACCCTTACCAGGAAGAACAAGTTCTTCTGCGA
GAGCTGCAACGCGCTGCAAGAGGCCGAGAAGAAGATTCGGCTGAAGCGAC
TGCCGCGGGTTCTAACCCTGCACCTCAAGCGCTTCAAGTACGTCGAGTCG
TTGGAAAGCTTCTCCAAGCTGTCGCACAGGGTCGTCTTTCCCCTCGAGCT
CCGAGCGCCAAACATGACGGACGCAGCCGGCGAGGCGGATGCGGACGGTC
GACTCTACAGGCGAGTTCGTCTTCTGCTTTTGCTGTTTGCCGTTGTCGTA
CACATCGGTCGTGGTCCCAACCATGGGCACTACGTGGCGGTAGTCAAGTC
AGGAGGTCGCTGGCTGCTGTTCGACGACGAGATCGTGGAGCTCGTTAACG
AACAGGTTCTCAAGCAGTGCTTTGGGCTAGCACGCCCAGAGACGGCCGCC
ACCAACACAGGGTACCTCTTGCTGTATGACTGCGGCGAGTAG
back to top