mRNA_P-littoralis_Contig8.101.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.101.1
Unique NamemRNA_P-littoralis_Contig8.101.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig8.101.1 vs. uniprot
Match: A0A6H5JNR4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNR4_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 4.930e-56
Identity = 96/122 (78.69%), Postives = 106/122 (86.89%), Query Frame = 1 
Query:    1 MSKVAAPARAATSRAVVATPKRGMAGGAAPKYTGWEAKIREKLPKDEHVVVAISGFYVGLYVVFKGLSAAFSSPKKEVATPAVAEVTTTSSDIPAGTEDDFWQWLEGAGNLEKYLATVDAAE 366
            MSK AAPARA  SRA  A PKRGMAGGAAP+YTGWEA+IREKLPKDEHVVVAISGFYVGLYV+ KG+SA FSSP+KEVA P VA  + TSSDIP G ED+FWQWLEGAGN+EKYLAT+D A+
Sbjct:    7 MSKAAAPARAVASRAAPAVPKRGMAGGAAPEYTGWEAQIREKLPKDEHVVVAISGFYVGLYVLVKGISALFSSPEKEVAAPVVAS-SATSSDIPDGYEDNFWQWLEGAGNMEKYLATIDKAQ 127
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BLAST of mRNA_P-littoralis_Contig8.101.1 vs. uniprot
Match: A0A6U4IDD0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IDD0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.500e-7
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1 
Query:   22 ARAATSRAV-VATPKRGMAGGAAPKYTGWEAK--IREKLPKDEHVVVAISGFYVGLYVVFKGLSAAFSSPKKEVATPAVAEVTTTSSDIPAGTEDDFWQWLEGAGNLEKYLATVD 357
            ARA  +RA  +  PKR   GGAA +Y        +R+ LP+D HVV+AI G Y  LY+    LS  FS  K           +T+SS + +  ++ F +W+   GN+EKY   V+
Sbjct:   15 ARAQRARAANMKMPKR-FGGGAAVEYEPGSPDYIVRQYLPEDRHVVMAICGGYFSLYL----LSKLFSGGKXXXXXXXXXPASTSSSGVKSMADEGFAEWIAVDGNIEKYFKAVE 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNR4_9PHAE4.930e-5678.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U4IDD0_9STRA6.500e-736.52Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:460006..466237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBJ5
Model size1344
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons3
Evalue3.72e-61
EggNOG OGs2CYCG@1|root,2S3JM@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003740.1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791636.3278184-UTR-P-littoralis_Contig8:460005..4609801680791636.3278184-UTR-P-littoralis_Contig8:460005..460980Pylaiella littoralis U1_48UTRP-littoralis_Contig8 460006..460980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791636.3397865-CDS-P-littoralis_Contig8:460980..4611141680791636.3397865-CDS-P-littoralis_Contig8:460980..461114Pylaiella littoralis U1_48CDSP-littoralis_Contig8 460981..461114 -
1680791636.3542-CDS-P-littoralis_Contig8:461826..4619171680791636.3542-CDS-P-littoralis_Contig8:461826..461917Pylaiella littoralis U1_48CDSP-littoralis_Contig8 461827..461917 -
1680791636.3637023-CDS-P-littoralis_Contig8:466093..4662371680791636.3637023-CDS-P-littoralis_Contig8:466093..466237Pylaiella littoralis U1_48CDSP-littoralis_Contig8 466094..466237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.101.1prot_P-littoralis_Contig8.101.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 460981..466237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.101.1

>prot_P-littoralis_Contig8.101.1 ID=prot_P-littoralis_Contig8.101.1|Name=mRNA_P-littoralis_Contig8.101.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
MSKVAAPARAATSRAVVATPKRGMAGGAAPKYTGWEAKIREKLPKDEHVV
VAISGFYVGLYVVFKGLSAAFSSPKKEVATPAVAEVTTTSSDIPAGTEDD
FWQWLEGAGNLEKYLATVDAAE*
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mRNA from alignment at P-littoralis_Contig8:460006..466237-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.101.1 ID=mRNA_P-littoralis_Contig8.101.1|Name=mRNA_P-littoralis_Contig8.101.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6232bp|location=Sequence derived from alignment at P-littoralis_Contig8:460006..466237- (Pylaiella littoralis U1_48)
ATGTCGAAGGTGGCGGCGCCCGCAAGGGCAGCTACCTCGCGAGCGGTGGT
GGCGACCCCCAAGCGCGGAATGGCCGGTGGAGCAGCCCCAAAGTACACCG
GGTGGGAGGCCAAGATTAGGGAGAAGCTTCCCAAGGACGAGCACGTGAGT
TCCGACAAACGCGAGACACCACCACCAAGTCGCGATGCAAGCAGGTAGAC
AGGTTATGGGAAGAATCAAGAACCGCACACGAAGCAGTGACAGAAAACCG
ATGCAATGCATCTCTCTTCGGTCACACATTTATCTCTACACGGCCTTCGC
TTTTGGGATGGCCAAACCTATGTTCCTCGTGTCTTTTACGTTTCAGACGT
GACCTACCCACCTACACCCGCTTTACCTTTTTCGGACCGGACCATTGGAA
GAACACCAGAACACAACGATCGCCCAACGATCGGCCAACTGCTGTGCCAG
TCGACATCAGTTGATTGGATGCGTATCTCTCGTTGCTCGCCCACGGAATT
CACGAGGAGGGTGGGTAAGTGGGGATCGCTAACATGCAGCGAAGTGGAAA
GAATTCAAGGTGGTTTTTTTCTGAGAGGTGCAAGTCTGAGCGAAGGAGAA
CATGTCAGTACTCCGTATACGCCTCTCAGGGTGGGGCCTTCGTAATTTTT
TTGGACTCGAACATCGAACAAGCGGCATAATCATGTGATTGGCCGGGAAA
ATAAAATAAAACAAAAGATGTCAGGGTGTTCGAGATTTTCTACGCCGGAT
CTTCCAGGGGCGATTCCGTCTAAAACTCTAACATCTTTCACAAAAACTCG
AAAACCTAACACCGAACCTACAGTCCTGTGGGCTATTGACGAAATAAATT
AATTGGTGACAGTAAAGAAGACCCGCGTCTGTCTATCGCTCCCTCTCACC
ACAAGAGAGAGGGCGACCGGGCGACCGAGAGAGAGACGACCGCAGAGCAT
AGCCGCAAAACAAGTGTCTATGCCGAGCGACAGCGAGGTTTCGACTGATC
CCAGGGCCCCGCGTGCGCAAGCGGGGCCAGGTGAGACGCAATCACACGGG
GGTGGCTTCCTGTCGCAACCACACAGCAGCCGTAGCAGCAGCAGCAGCAG
CAGCTGCTGCGTACCGATATACGGTATATGAAAGCCCGGTCTATTGGGGA
GCACTTGCGTGTGTGTGTGTGCGTGTGGGATTTTTTTACTCGCCTTTTCC
GAAATTACAAAGGACCCAAAAAGTCGAACATCGAACTATCCGCTTGTTCG
ATGTTCGAGTCCAAAAAATTACGTAGGCCCCACCCTCAGAGGTGTTGTTT
TTTTGTCACACAAACGTGAAATTGTTGTCGGACCGTTTCTTGGGCTGTTT
CTTACGGTCAACGTTTTTTTGGCCTGGCGTTTTGACCCCCCTGCAAGAAT
CCAACCAGAGAATCCCCCTACCCCCCACCCCCAAACAGCCCTGTTGCACA
CATCAGGCGACAGCACCAACCAGAACTCGACCCCTAGGACACAGATGCCG
ATCAAACCTGATGGAGCGTGTGCTCCCATGTTCTCAAGTCGGCCACAGGA
AGTTTGGTGGCAGTGGGTTCGGTCTGTGGCGAGATTTTGGCGGCGGTGTG
TGTTGGAGATGGAAAAACAGTTAAAACGAAATAACGGCCTTCGCTCCTGT
TTTTCCGGCCAAAAAACAGGCTGGGACAGCGTTTTTGTTTCCACCGGATT
TTCCTACCTCAACCCACTCCGCCGCCGAAACCTCGCCACAGCCAAAACCC
ACACCCACCAAATTTCCTGTGGCCAACCTGAGAACACCAGAGCGTACCGT
CCAGCAGTTATAGTCTCGATTGGTGCACCAGGGGTCGAATTCTGCTTGGT
GCTGTCTCCTGTTGTGCTCAAAAAGTAGATTTTTCAACCGTCTTACGGCT
CCGTTATTTGGTCCTGCATTTTTTCTCCTGAGGTACCCCTCCCCCCCAAT
AACAGAGAGCCCAAACGGTTGAAAAATCTACTTTTTGAGCACAACAGGAA
ACAGCACCAAGCAGAATTCGACCCCTGGGGCACCAATCGAGACTATAACT
GCTGGACGGTACGCTCTGGTGTTCTCAGGTTGGCCACAGGAAATTTGGTG
GGTGTGGGCTTTGGCTGTGGCGAGGTTTCGGCGGCGGAGTGGGTTGAGGT
AGGAAAATCCGGTGGAAACAAAAACGCTGTCCCAGCCTGTTTTTTGGCTG
GAAAAACAGGAGCGAAGACCGTTATTTCGTTTTAACTGTTTTTCCATCTC
CAACACACACCGCCGCCAAAATCTCGCCACAGACCGAACCCACTGCCACC
AAACTTCCTGTGGCCGACTTGAGAACATGGGAGCACACGCTCCATCAGGT
TTGATCGGCATCTGTGTCCTAGGGGTCGAGTTCTGGTTGGTGCTGTCGCC
TGATGTGTGCAACAGGGCTGTTTGCGGGGGGGGGGTAGGGGTAGGGGGGT
TCTCTGGTTGGATTCTTGCAGGGGGGTCAAAACGCCAGGCCAAAAAAACG
TTGACCGTATGAAACAGCCTCATACAGCAGTATGGCGATACAGCAGTATG
GCGGTTAGGGCCCGGATTAACGGTATTCCGAAAAAACGAAACACTTGTAG
CGAAAACGAAAACGAAAGTGGGCTGTGATTGGTCAAAATAAAATATTTGA
ATGAAATAGGCGTGTTTTAGTTTCAACGCCCTCCGGAGAGGCGTTCCTTC
GTTTTCGATTTCGCTAAAATAAGATATTTTGGACCTTTACTTTTGCGAAA
TCGATAACGAAATTCGACATGGAAGACTTGTTGGCGGGGATGCTTCAGCT
CTGCGAGGCTAATCTGGTTGACCTTTGCACAGCAGAGTTCATGTGCTGAC
TGATATCTCGCCACACAAGGGACGACATTCCCTCCCAACTGCATGTCTAG
AGAGATGAGCTTGCGTCAACTAGAAATGCCCAAGGTTTGGGGCAGTGGGA
TGCCAAGCAGGACGGGAAAAAAGTTTTCAATCTACCCACTATGACCCCCC
TCGTGCTCTGAGCCGGTTTTGGGGTGAGTTTTGCAAGCAGCCAAGTTCAC
GTTTTCACTGATAACTCAGCGAAACATGGACGAGATTCCCTACCAACTGC
GTCTCTGGAGAGGTTGATCTGTCCATCGGGACAGTCCAAAGTTTGGGGCA
GCGGGGTGTCAAGCGTGACGGGAAGCAAGGCACCAGTCACTGCAAAAGTT
CAAACAACAAGCAGTCGATTTTGCCTCTTTCTTAAGAGAGAGGGCTGCTT
CGAGCCTTGTTGTCCGTCGTTTTTGATGTGGCGGTACTCCGAACCTCAGC
TTTAGACATATCTCTGTATCGGTGCGTTTGATAGGGGATTTCGTCAGGAT
TTGGTCGAGGTATCAGTGAAAACGTCAATATTGCCGCAGCTCGAAGAGAC
AACGCAAATGGTGTTACTCTCGTTCACCCCCTCTTCTCCAGGGCCCTGGT
AACAGGTCCGTTGTCACAGCCCGAAATAAAATAAAATAAGAGCCTTGTCC
GTTAATACGCAACAGTTCGTTTTCCCCCGAAAACGAAGTTATATCGTTCT
GCAGACCTGATTTCGTTTTTTTGGTCTACCGTTAATCCCCGCTCTTAGAG
CTGGACGAAGCGCCAGAAGTTGGAGCGGCCTCAAGTACTGATGTACGGGA
GGGGGAGGGTGCGATTCAAGTATTTGTTGATTCTCCATGAAGGGTTGACT
GGGAGGCAAGTACTTCAGGCAATCGACAGCAGGATGTTCGGCGCAAAGCA
ATCGCCGAGGGTACGCTCGGGTTAGACTCTGAACGGGGGGCTCCGTTCTT
GCGCAATGCTCTTCTGATTTTGGGTCCAACCCGCAAGTCCAGTACTTGAA
GCACGAGTATGACGTGATGTTAAGGATAATGGTACGACACGGCAAAGGAA
AGTCCAAGATTATTGCTCAATCTCGCACCATCAAAGTCACACCGCGTGTT
GCCGGCCGATCTCTTTCATATTCTGCTGGTGTCGGCGACACACACCGAGA
AAGACAATTGCGCACAGACCACCCCCCCGCGTAGTATCCGTACATGGCGT
GGGTCATTGGCGATATATCCGCCCGGTGCGCGCGAGTTGTTGTGTACAAA
GCGATTGTGTATAGCAAGCCCAACAAGACACGACAGATCCCCCTCTGTCC
ATTTTGTTTTGTCTTGCTTTCATTTATTTTTCGTTTGCAAACGAACCATT
TCAACTGTCCAGCGGCCCTGTCTCAACGTGCTCTTTCCTTCGAATGTGTG
AAGTTGCTTCGCGATGAACCTTGCTCTCTGACGACATGGTATTGTTTTTT
GTATGTATGTGCGGCGGCAGGTGGTCGTGGCCATCAGCGGGTTCTATGTG
GGTTTGTACGTGGTGTTCAAGGGCTTGTCGGCGGCGTTCTCGTCCCCCAA
GAAGGAAGTTGGTGAGAATCACGGCGAGAAGCGTCGGGAGGTCGTATTTC
ACATCGTACAGTTCATACTGCGTGGAAAACACGTCGCCTATCTCGTAGGT
AGGTAGATCCCCGCCAGGAGAGACTCTGCTGTTGCTTCTGCGGTCAACCT
AGCTACCACGGAGTGCTCATCTCACCTTGATGCTGTTGTTCGACATTCAA
AAGCTTGCACGTGCCTCTAAGGCACACAATGTGCAGGCGGTACGTGTAAC
GGCGCCGGGCTCGCAATTTCCGTGGCTGACCACACGCTCTGCACGAGGCT
ATATTCATGGCTCGGTGTTTATTCGTAAGGGGTGTCCGTGACGTTGCCGA
CTCACCTTTCGTGATTGACCCAATATCTTGCAACGCAAAAGTCGTGACGG
CATTTTGAAACATGGCTTAGCGTTAGAAAAAGCAAACCCGGAGCGTTATT
TATTTGGGGTTATCCCGCGCAAGGTGACGGGGGTGCTGGAAGTGCTTTGT
AGGATGCATGAAGGGCTTCACACGTGTTGTCCCGTGTCTCGACAAAACGG
TGACCCCGCCGAACCGCACAACAATATGACTCGTCTGCTGTCGTCCATGT
GTGTCGAAATATGTAGGTGTTTGTGCTGCATCATGTTTTACACAAAAGTA
TACCCACGATACCCATTTCAACCCCCCTCCGCCCGTGCGCGCGCGCTCCG
TGATACCTCGTCGTGACTCGCAGCTACCCCTGCCGTCGCTGAGGTGACGA
CAACCAGCTCCGATATCCCAGCCGGTACCGAGGACGACTTCTGGCAATGG
CTCGAAGGCGCCGGGAACCTGGAAAAGTACCTTGCGACCGTTGACGCGGC
AGAGTAGACTGCAGAGTAGACTGCATGGTGGGTGGGGGCGGGGCTTTTTC
TCGCGTACGCATGATATATTTGGCAACACGCTTTGCCTGTCATCGGAGAT
TATAATTTATGGAATGCGATGCGAGAAACACTAATGCGACGATGCTAGGG
TGCTTGGTGTTGCACGGGGTGAAGAGGGAGGGGAGAGGTTGCGGTGAAGC
TGCTTCAGCATGCCATGAGGCCATCCGGATACACGACACAAAAGCTACCG
TTTTGGGGTAGAGTGGCCTGGAAGGGAGCAGGTACAAAGTCCTGAAGAGC
GTGCCAGGGTTTTTTTTTCGGATTATTGGCTGACTCGCACCGGGGAGGTG
TGAGCCTGTTGACGCTTCTCGCAGGTATGTGCGCTCCTTCAGAGAGAAAG
GGTTTACAAGAAAATGGGGTGAGGGACTTGGACAAGGTTCAAGCCCAAGG
CAGTGCTACTGCTCTTGTATTATTTCTATGCAGAGTATAGATCTCAGGCA
TACTGTGGAGATGGCGAGAAAGCTCGTGTATACTACTGCTGTCGTGTGTT
CCCGACGTTTGGCCATCTCTGAAGGTTGTTGGCCGAGCGGGGTTTCCTCG
AGGGAAAACCGATGCAGTCTATGTTTTCGTTCAAAAAAAATTAGGGGGCA
CGCTTGTTTTTGCGTTCCGGGGATGGCACAGCATCAGGCCTACCTTTGGC
ATAATCCTGTGCAAAACAGGGAGGGAGCTCTCAAGACTGCACACAGCAGT
CGCGTCATCCATACTCGACTGCACGAGGCACACCTGCCTGTTTTGTTTGT
CTCCGTCAATTTATGTACCTCTTCTTGAATGTTCCCCGAGTCACCAACAC
GTGTGTTGAGGTACCCGTCTCCGCCATCGCTTCATCGATTTGGTCTGTTT
TTACTTCTTGCTCGGATCGGACAAACATATCACCGAGTCGCGAGGGAGGA
AGTACCTAGTACACGTGCACCTGAGTTCCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:460006..466237-

>mRNA_P-littoralis_Contig8.101.1 ID=mRNA_P-littoralis_Contig8.101.1|Name=mRNA_P-littoralis_Contig8.101.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig8:460006..466237- (Pylaiella littoralis U1_48)
ATGTCGAAGGTGGCGGCGCCCGCAAGGGCAGCTACCTCGCGAGCGGTGGT
GGCGACCCCCAAGCGCGGAATGGCCGGTGGAGCAGCCCCAAAGTACACCG
GGTGGGAGGCCAAGATTAGGGAGAAGCTTCCCAAGGACGAGCACGTGGTC
GTGGCCATCAGCGGGTTCTATGTGGGTTTGTACGTGGTGTTCAAGGGCTT
GTCGGCGGCGTTCTCGTCCCCCAAGAAGGAAGTTGCTACCCCTGCCGTCG
CTGAGGTGACGACAACCAGCTCCGATATCCCAGCCGGTACCGAGGACGAC
TTCTGGCAATGGCTCGAAGGCGCCGGGAACCTGGAAAAGTACCTTGCGAC
CGTTGACGCGGCAGAGTAG
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