mRNA_P-littoralis_Contig8.74.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: D8LB87_ECTSI (Similar to Dynein light chain Tctex-type 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB87_ECTSI) HSP 1 Score: 151 bits (381), Expect = 2.010e-41 Identity = 72/92 (78.26%), Postives = 83/92 (90.22%), Query Frame = 3
Query: 684 TQVLETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
++VL+ LQD++Y ASSV++W+ AICSQ +AALR ISGSFKYTATCVLTQK GGGLHTSSAAC+EPS DGCVVERWENQ+I AIVVVFGCSL
Sbjct: 21 SKVLDVTLQDRKYDASSVEEWSDAICSQTLAALRSISGSFKYTATCVLTQKTGGGLHTSSAACYEPSTDGCVVERWENQSILAIVVVFGCSL 112
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A0A835YG30_9STRA (Tctex-1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YG30_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.460e-18 Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 3
Query: 684 TQVLETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCS 956
TQ+L+ L+ Q Y + ++W + S V AL+G+S FKY ATC + QK GGGLH+ SAA W+P+ DGC WE ++A VV F S
Sbjct: 24 TQLLDETLKGQAYEPDAAKEWAAKLSSGAVTALQGLSQHFKYIATCTIAQKCGGGLHSESAASWDPARDGCCDVAWEGDGMSATVVAFATS 114
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A0A4Z1SNT5_GIAMU (Dynein light chain n=1 Tax=Giardia muris TaxID=5742 RepID=A0A4Z1SNT5_GIAMU) HSP 1 Score: 80.5 bits (197), Expect = 5.070e-15 Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 3
Query: 687 QVLETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
+VL+T L Y+AS V QWT + +++ L + +KY TC L Q+MG GLH S+A W+ + DG WEN+TI ++ VFG S+
Sbjct: 13 EVLDTTLGQATYQASKVTQWTETLIDEVLKRLVALKKPYKYLVTCALLQRMGAGLHASTAEYWDAATDGHAHITWENRTIYCMMTVFGLSI 103
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A0A553PGG0_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PGG0_TIGCA) HSP 1 Score: 77.8 bits (190), Expect = 5.990e-14 Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 3
Query: 693 LETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
+E+ + Y + V WT ++ +A+L + FKY TCV+ QK G GLHTSS+ W+ S DG RWEN+T+ IV VFG ++
Sbjct: 24 IESTIGGNSYVHTKVNLWTNSVVEACLASLTKLQKPFKYIVTCVIMQKNGAGLHTSSSCYWDNSTDGSCTVRWENKTMYCIVSVFGLAI 112
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A7S9M2_NEMVE (Predicted protein n=23 Tax=Eumetazoa TaxID=6072 RepID=A7S9M2_NEMVE) HSP 1 Score: 77.4 bits (189), Expect = 8.440e-14 Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 3
Query: 720 YRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
Y+ + V QWT+ + Q + L + FKY TCV+ QK G GLHTSS+ W+ + DG RWEN+T+ IV VFG ++
Sbjct: 34 YQHNKVNQWTSNVVEQCLNQLTKLGKPFKYIVTCVIMQKNGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSVFGLAI 113
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A0A672YXN3_9TELE (Dynein light chain Tctex-type 1 n=2 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672YXN3_9TELE) HSP 1 Score: 77.4 bits (189), Expect = 1.310e-13 Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 3
Query: 693 LETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
+E+ + Y+ S V QWTT + Q ++ L + FKY TCV+ QK G GL TSSA W+ + DG RWEN+++ IV V+G ++
Sbjct: 42 VESAIGGNAYQHSRVHQWTTTVVEQCLSQLSKLGKPFKYIVTCVIMQKNGAGLQTSSACFWDNTTDGSCAVRWENKSMYCIVSVYGLAI 130
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A0A8D3B1M4_SCOMX (Dynein, light chain, Tctex-type 1 n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3B1M4_SCOMX) HSP 1 Score: 75.5 bits (184), Expect = 4.110e-13 Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 3
Query: 693 LETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
+E + Y+ S V QW+T+I Q ++ L + FKY TC++ QK G GL T+SA W+ S DG RWEN+ + IV VFG ++
Sbjct: 25 VEATIGANAYQHSRVNQWSTSIVEQCLSQLSKLGKPFKYILTCIIMQKNGAGLQTTSACFWDNSTDGSCALRWENKYMYCIVSVFGLAI 113
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A0A443SGD9_9ACAR (Uncharacterized protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SGD9_9ACAR) HSP 1 Score: 75.1 bits (183), Expect = 5.640e-13 Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 3
Query: 687 QVLETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
+ +E L Y+ + V QW+ A+ Q++A L S +FKY TCV+ QK G G++TS++ W+ + D + RWEN+++ IV VF ++
Sbjct: 23 EAIEGVLGSNSYQHTKVNQWSNAVSEQLIAQLTKTSKAFKYIVTCVIVQKTGAGVNTSTSCFWDSTTDTSCIVRWENKSLHCIVQVFALAI 113
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: E9GKJ3_DAPPU (Uncharacterized protein n=3 Tax=Daphnia TaxID=6668 RepID=E9GKJ3_DAPPU) HSP 1 Score: 74.3 bits (181), Expect = 1.120e-12 Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 3
Query: 687 QVLETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
+ +E+ + Y + V QW+++I + +L + FKY TCV+ QK G G+HTSS+ W+ S DG RWEN+T+ IV VFG ++
Sbjct: 25 EAIESVIGGNTYLHNKVNQWSSSIMDCCLQSLVKLQKPFKYIVTCVVVQKNGAGVHTSSSCFWDNSTDGSCTVRWENKTMYCIVSVFGLAI 115
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: M3XK16_LATCH (Uncharacterized protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=M3XK16_LATCH) HSP 1 Score: 73.2 bits (178), Expect = 2.740e-12 Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = 3
Query: 693 LETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
+E+ + Y+ + V QWT+++ + L + FKY TCV+ QK G GLHT+S+ W+ + DG RWEN+T+ I+ VFG ++
Sbjct: 25 IESTIGGNIYQHNRVNQWTSSVVETCLNQLTKLGKPFKYIVTCVILQKNGAGLHTTSSCFWDNTVDGSCTVRWENKTMYCILSVFGLAI 113 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig8.74.1 >prot_P-littoralis_Contig8.74.1 ID=prot_P-littoralis_Contig8.74.1|Name=mRNA_P-littoralis_Contig8.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp MLRKLRAETSHAHTPANTPAHTQVLETNLQDQQYRASSVQQWTTAICSQIback to top mRNA from alignment at P-littoralis_Contig8:341296..343025+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig8.74.1 ID=mRNA_P-littoralis_Contig8.74.1|Name=mRNA_P-littoralis_Contig8.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1730bp|location=Sequence derived from alignment at P-littoralis_Contig8:341296..343025+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig8:341296..343025+ >mRNA_P-littoralis_Contig8.74.1 ID=mRNA_P-littoralis_Contig8.74.1|Name=mRNA_P-littoralis_Contig8.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig8:341296..343025+ (Pylaiella littoralis U1_48)back to top |