mRNA_P-littoralis_Contig8.74.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.74.1
Unique NamemRNA_P-littoralis_Contig8.74.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: D8LB87_ECTSI (Similar to Dynein light chain Tctex-type 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB87_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 2.010e-41
Identity = 72/92 (78.26%), Postives = 83/92 (90.22%), Query Frame = 3
Query:  684 TQVLETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
            ++VL+  LQD++Y ASSV++W+ AICSQ +AALR ISGSFKYTATCVLTQK GGGLHTSSAAC+EPS DGCVVERWENQ+I AIVVVFGCSL
Sbjct:   21 SKVLDVTLQDRKYDASSVEEWSDAICSQTLAALRSISGSFKYTATCVLTQKTGGGLHTSSAACYEPSTDGCVVERWENQSILAIVVVFGCSL 112          
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A0A835YG30_9STRA (Tctex-1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YG30_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.460e-18
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  684 TQVLETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCS 956
            TQ+L+  L+ Q Y   + ++W   + S  V AL+G+S  FKY ATC + QK GGGLH+ SAA W+P+ DGC    WE   ++A VV F  S
Sbjct:   24 TQLLDETLKGQAYEPDAAKEWAAKLSSGAVTALQGLSQHFKYIATCTIAQKCGGGLHSESAASWDPARDGCCDVAWEGDGMSATVVAFATS 114          
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A0A4Z1SNT5_GIAMU (Dynein light chain n=1 Tax=Giardia muris TaxID=5742 RepID=A0A4Z1SNT5_GIAMU)

HSP 1 Score: 80.5 bits (197), Expect = 5.070e-15
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  687 QVLETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
            +VL+T L    Y+AS V QWT  +  +++  L  +   +KY  TC L Q+MG GLH S+A  W+ + DG     WEN+TI  ++ VFG S+
Sbjct:   13 EVLDTTLGQATYQASKVTQWTETLIDEVLKRLVALKKPYKYLVTCALLQRMGAGLHASTAEYWDAATDGHAHITWENRTIYCMMTVFGLSI 103          
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A0A553PGG0_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PGG0_TIGCA)

HSP 1 Score: 77.8 bits (190), Expect = 5.990e-14
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  693 LETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
            +E+ +    Y  + V  WT ++    +A+L  +   FKY  TCV+ QK G GLHTSS+  W+ S DG    RWEN+T+  IV VFG ++
Sbjct:   24 IESTIGGNSYVHTKVNLWTNSVVEACLASLTKLQKPFKYIVTCVIMQKNGAGLHTSSSCYWDNSTDGSCTVRWENKTMYCIVSVFGLAI 112          
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A7S9M2_NEMVE (Predicted protein n=23 Tax=Eumetazoa TaxID=6072 RepID=A7S9M2_NEMVE)

HSP 1 Score: 77.4 bits (189), Expect = 8.440e-14
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  720 YRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
            Y+ + V QWT+ +  Q +  L  +   FKY  TCV+ QK G GLHTSS+  W+ + DG    RWEN+T+  IV VFG ++
Sbjct:   34 YQHNKVNQWTSNVVEQCLNQLTKLGKPFKYIVTCVIMQKNGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSVFGLAI 113          
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A0A672YXN3_9TELE (Dynein light chain Tctex-type 1 n=2 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672YXN3_9TELE)

HSP 1 Score: 77.4 bits (189), Expect = 1.310e-13
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 3
Query:  693 LETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
            +E+ +    Y+ S V QWTT +  Q ++ L  +   FKY  TCV+ QK G GL TSSA  W+ + DG    RWEN+++  IV V+G ++
Sbjct:   42 VESAIGGNAYQHSRVHQWTTTVVEQCLSQLSKLGKPFKYIVTCVIMQKNGAGLQTSSACFWDNTTDGSCAVRWENKSMYCIVSVYGLAI 130          
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A0A8D3B1M4_SCOMX (Dynein, light chain, Tctex-type 1 n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3B1M4_SCOMX)

HSP 1 Score: 75.5 bits (184), Expect = 4.110e-13
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  693 LETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
            +E  +    Y+ S V QW+T+I  Q ++ L  +   FKY  TC++ QK G GL T+SA  W+ S DG    RWEN+ +  IV VFG ++
Sbjct:   25 VEATIGANAYQHSRVNQWSTSIVEQCLSQLSKLGKPFKYILTCIIMQKNGAGLQTTSACFWDNSTDGSCALRWENKYMYCIVSVFGLAI 113          
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: A0A443SGD9_9ACAR (Uncharacterized protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SGD9_9ACAR)

HSP 1 Score: 75.1 bits (183), Expect = 5.640e-13
Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  687 QVLETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
            + +E  L    Y+ + V QW+ A+  Q++A L   S +FKY  TCV+ QK G G++TS++  W+ + D   + RWEN+++  IV VF  ++
Sbjct:   23 EAIEGVLGSNSYQHTKVNQWSNAVSEQLIAQLTKTSKAFKYIVTCVIVQKTGAGVNTSTSCFWDSTTDTSCIVRWENKSLHCIVQVFALAI 113          
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: E9GKJ3_DAPPU (Uncharacterized protein n=3 Tax=Daphnia TaxID=6668 RepID=E9GKJ3_DAPPU)

HSP 1 Score: 74.3 bits (181), Expect = 1.120e-12
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  687 QVLETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
            + +E+ +    Y  + V QW+++I    + +L  +   FKY  TCV+ QK G G+HTSS+  W+ S DG    RWEN+T+  IV VFG ++
Sbjct:   25 EAIESVIGGNTYLHNKVNQWSSSIMDCCLQSLVKLQKPFKYIVTCVVVQKNGAGVHTSSSCFWDNSTDGSCTVRWENKTMYCIVSVFGLAI 115          
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Match: M3XK16_LATCH (Uncharacterized protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=M3XK16_LATCH)

HSP 1 Score: 73.2 bits (178), Expect = 2.740e-12
Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = 3
Query:  693 LETNLQDQQYRASSVQQWTTAICSQIVAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQTIAAIVVVFGCSL 959
            +E+ +    Y+ + V QWT+++    +  L  +   FKY  TCV+ QK G GLHT+S+  W+ + DG    RWEN+T+  I+ VFG ++
Sbjct:   25 IESTIGGNIYQHNRVNQWTSSVVETCLNQLTKLGKPFKYIVTCVILQKNGAGLHTTSSCFWDNTVDGSCTVRWENKTMYCILSVFGLAI 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LB87_ECTSI2.010e-4178.26Similar to Dynein light chain Tctex-type 1 n=2 Tax... [more]
A0A835YG30_9STRA3.460e-1845.05Tctex-1 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A4Z1SNT5_GIAMU5.070e-1540.66Dynein light chain n=1 Tax=Giardia muris TaxID=574... [more]
A0A553PGG0_TIGCA5.990e-1440.45Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A7S9M2_NEMVE8.440e-1443.75Predicted protein n=23 Tax=Eumetazoa TaxID=6072 Re... [more]
A0A672YXN3_9TELE1.310e-1340.45Dynein light chain Tctex-type 1 n=2 Tax=Sphaeramia... [more]
A0A8D3B1M4_SCOMX4.110e-1340.45Dynein, light chain, Tctex-type 1 n=1 Tax=Scophtha... [more]
A0A443SGD9_9ACAR5.640e-1336.26Uncharacterized protein n=1 Tax=Leptotrombidium de... [more]
E9GKJ3_DAPPU1.120e-1238.46Uncharacterized protein n=3 Tax=Daphnia TaxID=6668... [more]
M3XK16_LATCH2.740e-1237.08Uncharacterized protein n=1 Tax=Latimeria chalumna... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:341296..343025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB87
PFAMsTctex-1
Model size1208
Max annot lvl2759|Eukaryota
KEGG koko:K05039,ko:K10420
KEGG TC2.A.22.3
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.36e-46
EggNOG OGsKOG4081@1|root,KOG4081@2759|Eukaryota
Ec32 ortholog descriptionsimilar to Dynein light chain Tctex-type 1
Ec32 orthologEc-27_004800.1
Descriptionintracellular transport of viral protein in host cell
Cds size342
COG categoryS
BRITEko00000,ko02000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791634.593897-UTR-P-littoralis_Contig8:341295..3419151680791634.593897-UTR-P-littoralis_Contig8:341295..341915Pylaiella littoralis U1_48UTRP-littoralis_Contig8 341296..341915 +
1680791634.6352353-UTR-P-littoralis_Contig8:342779..3430251680791634.6352353-UTR-P-littoralis_Contig8:342779..343025Pylaiella littoralis U1_48UTRP-littoralis_Contig8 342780..343025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791634.608333-CDS-P-littoralis_Contig8:341915..3421081680791634.608333-CDS-P-littoralis_Contig8:341915..342108Pylaiella littoralis U1_48CDSP-littoralis_Contig8 341916..342108 +
1680791634.619119-CDS-P-littoralis_Contig8:342630..3427791680791634.619119-CDS-P-littoralis_Contig8:342630..342779Pylaiella littoralis U1_48CDSP-littoralis_Contig8 342631..342779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.74.1prot_P-littoralis_Contig8.74.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 341916..342779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.74.1

>prot_P-littoralis_Contig8.74.1 ID=prot_P-littoralis_Contig8.74.1|Name=mRNA_P-littoralis_Contig8.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MLRKLRAETSHAHTPANTPAHTQVLETNLQDQQYRASSVQQWTTAICSQI
VAALRGISGSFKYTATCVLTQKMGGGLHTSSAACWEPSNDGCVVERWENQ
TIAAIVVVFGCSL*
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mRNA from alignment at P-littoralis_Contig8:341296..343025+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.74.1 ID=mRNA_P-littoralis_Contig8.74.1|Name=mRNA_P-littoralis_Contig8.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1730bp|location=Sequence derived from alignment at P-littoralis_Contig8:341296..343025+ (Pylaiella littoralis U1_48)
ACTCAGTATGCATGCTTCAAGGCCGAAAAGGTGATGGGGGGGGGGGAAAA CTCCGTAGTTTACGGTAAGTTGGGCGTTATCAGTCGGAGTACACACGGGA GAAAAGGTGAACACAGGAGTTTTTTTTTCTTATGCCGTACATACGGGTGG AAAATATTCGTTTTCGGTTGGTTGTTCGGGGGTCGTCACGGTTTACGATA CACACATTCAAAGCCGAAGATGGAGAGGAAAATACGGCTTGACCACCGCT GTAAGCGATACCCGAAACATGAACTGCTTTTTCGGGCTATTAGCAGCAAA CAGTGGGGGGCATGAACTGCAGCGGCAAAAGCAGAGTCGCTGGGCGTAGT TGTGCGGGCATGTCTGTCTATGCCAATGACATCACGGATGACGCGCGCGG AGTTTTTCAAACAACCGAACGTTAAAGAGTCAAGACGCTCGGTTTGGATA TGATATGCGAACGTAAAAAAATCGCAGTTCAGGTGGTAGGTTCGACCAAA TTTAAATTTCACTACACAGTACGATATCAAAGCCTATTTTTGATCACCCT TTTTTTGCTTTTGTGTCTCTCCCTCGCGCCCACCGCCCACCACCTGGCAC CAAGTATTTGACTACCACGCATGCTTCGTAAACTCCGTGCTGAAACATCG CACGCGCACACGCCCGCGAACACGCCCGCGCACACGCAGGTGTTGGAAAC GAATCTGCAAGACCAGCAGTATCGTGCGTCGAGCGTGCAGCAGTGGACGA CCGCGATATGCTCCCAGATCGTGGCCGCACTGAGGGGCATCAGCGGCTCT TTCAAGTACACAGGTGAGTGCATGCACATTTGAATGATTGATATGCCGGG GTTGTTTTGTGTCGTTGTCGGAGCAATCTCCCGCCCCCCGCCTCTCTCTC TCTCTCTTTCTCTCTCTACAAGTATAGACCGGTCGCCCCGGTGGACTAGT GGTCCCTCGTTAACCACTAGATGTAGAGGAACGGGGGTTCGATTCCCGGT GAATGTGTTCCTTTGCTACTTTGAAAGCGGCTATGCTGTTAGTAAAAGCA GATTCGGCTTCGCCGACGAGGGTAGGGACCGCGGACCCCTGCTCGCGAGA AAAAATCTCACGCATGTACCGCAGAAGGAAGGTGGGGGTAACTCCTCCTG TGTTGACCTTCCTCCTGTGTGACCCCGTCGATGGGCCTAGCCTGTAGTTT GAACCGCAGGGTGCAGACTAGTGTGCCAGAGAATATGGGATGACAACACA CACTTCGTATAACCCATTTATGTATCTCACCCCCACCCCCCCTCCCACGT TCCCTTCTTTTTGCACACAAAATGCATTCACGTAGCTACGTGCGTGCTGA CGCAGAAGATGGGGGGCGGGCTTCACACCAGCTCAGCGGCGTGTTGGGAG CCCTCTAACGACGGTTGCGTGGTGGAGAGATGGGAGAATCAAACGATTGC GGCGATCGTCGTCGTCTTCGGGTGTTCGTTGTAAGGAGGCGGCGTTGATT GACCCTGCCACGCCCGGACTTTTCAAAAAAATTATGAATACCCCGGGACA CGCATACAACCAGTAGGAGGTGAAGGCTTGTAAAATTATTGATATTCGTG AACCGTTGGTGATAGACCCTGGTCATACGTATCATATACACCATAGCGTG GATTGGAAGCTTTATGTGGAATTGATGTTGGCGTGGGAACTTGATTCTTA TTGGAGTACGTGAGGTTTCTCGCTGTAATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:341296..343025+

>mRNA_P-littoralis_Contig8.74.1 ID=mRNA_P-littoralis_Contig8.74.1|Name=mRNA_P-littoralis_Contig8.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig8:341296..343025+ (Pylaiella littoralis U1_48)
ATGCTTCGTAAACTCCGTGCTGAAACATCGCACGCGCACACGCCCGCGAA
CACGCCCGCGCACACGCAGGTGTTGGAAACGAATCTGCAAGACCAGCAGT
ATCGTGCGTCGAGCGTGCAGCAGTGGACGACCGCGATATGCTCCCAGATC
GTGGCCGCACTGAGGGGCATCAGCGGCTCTTTCAAGTACACAGCTACGTG
CGTGCTGACGCAGAAGATGGGGGGCGGGCTTCACACCAGCTCAGCGGCGT
GTTGGGAGCCCTCTAACGACGGTTGCGTGGTGGAGAGATGGGAGAATCAA
ACGATTGCGGCGATCGTCGTCGTCTTCGGGTGTTCGTTGTAA
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