prot_P-littoralis_Contig10.95.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig10.95.1
Unique Nameprot_P-littoralis_Contig10.95.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length323
Homology
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BLAST of mRNA_P-littoralis_Contig10.95.1 vs. uniprot
Match: A0A6H5JHZ8_9PHAE (RING-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ8_9PHAE)

HSP 1 Score: 347 bits (889), Expect = 1.090e-116
Identity = 168/254 (66.14%), Postives = 200/254 (78.74%), Query Frame = 0 
Query:    1 MTTPLYVLKPISPGYKEVLLPPGTRFIGRSAATGIKSQVVSRKHLEVAVERGACKVRYCGKFESEVTINGAPVDKEWTDFPVGARLNLLASTDVMFPYKLERYATAATXXXXXXXXXXXXXXNSAVYCDQHREMTTRLTCSICSDLYVDPTELDCQGKHLFCHACIHDFLTSEACTNKCPVCATHISVARRTDVLRAGRKRNPAGVPVGASHKYQSQAVGLVQDMIEWLIDKRMVDYDDETEWRKRSGLEPLPP 254
            MTTPLYVLKPIS GYKEVLLPPGT+FIGRS ATGI+SQVVSRKH+EVAVE   CKVRYC KF+SEV I+ A V KEW  FPVG RL  L +    FPY+LERY+TA++               +AV CDQH+E+TTRL C +C DL+VDP ELDC+GKHL+CH+CI+D + +E+C NKCP C T IS + R  +L+AGRKR  +G+PVGA+ +YQSQAVGLVQ++IEWLI+KRMV YDDETEWRKRSGLEPLPP
Sbjct:    1 MTTPLYVLKPISSGYKEVLLPPGTKFIGRSVATGIQSQVVSRKHIEVAVEGDVCKVRYCAKFKSEVKIDNALVKKEWVPFPVGGRLEFLENPVEAFPYRLERYSTASSATAAAEASGN----TAAVACDQHQEITTRLACPMCYDLFVDPIELDCKGKHLYCHSCIYDLVKNESCQNKCPTCMTSISSSTRKKILQAGRKRGASGMPVGANKRYQSQAVGLVQEVIEWLIEKRMVKYDDETEWRKRSGLEPLPP 250
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BLAST of mRNA_P-littoralis_Contig10.95.1 vs. uniprot
Match: D7FQD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD6_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.930e-50
Identity = 77/113 (68.14%), Postives = 97/113 (85.84%), Query Frame = 0 
Query:  142 ICSDLYVDPTELDCQGKHLFCHACIHDFLTSEACTNKCPVCATHISVARRTDVLRAGRKRNPAGVPVGASHKYQSQAVGLVQDMIEWLIDKRMVDYDDETEWRKRSGLEPLPP 254
            +C DL+VDP ELDC+GKHL+CH+CI+D + + +C NKCP+C T IS + R  +L+AGRKR  +G+PVGA+ +YQSQAVGLVQ++IEWLI+KRMV YDDETEWRKRSGLEPLPP
Sbjct:    1 MCYDLFVDPIELDCKGKHLYCHSCIYDLVKNGSCQNKCPICMTSISSSTRKKILQAGRKRGASGMPVGANKRYQSQAVGLVQEVIEWLIEKRMVKYDDETEWRKRSGLEPLPP 113
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BLAST of mRNA_P-littoralis_Contig10.95.1 vs. uniprot
Match: UPI000258D76D (E3 ubiquitin-protein ligase RNF8-like n=1 Tax=Megachile rotundata TaxID=143995 RepID=UPI000258D76D)

HSP 1 Score: 55.5 bits (132), Expect = 6.580e-5
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 0 
Query:  134 MTTRLTCSICSDLYVDPTELDCQGKHLFCHACIHDFLTSEACTNKCPVCATHISVARRTDVL 195
            M  +LTCSICS+L+V  T L C   H FCH CI+ ++      N+CPVC T ++   R+ VL
Sbjct:  383 MDEQLTCSICSELFVQATTLSCM--HTFCHHCINSWIKKR---NECPVCRTPVTSMNRSLVL 439
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.95.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHZ8_9PHAE1.090e-11666.14RING-type domain-containing protein (Fragment) n=1... [more]
D7FQD6_ECTSI1.930e-5068.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI000258D76D6.580e-545.16E3 ubiquitin-protein ligase RNF8-like n=1 Tax=Mega... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.200.20coord: 6..102
e-value: 1.0E-6
score: 30.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 304..322
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..322
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 256..270
NoneNo IPR availableCDDcd16449RING-HCcoord: 140..182
e-value: 6.04387E-8
score: 46.3065
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 129..187
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 118..222
e-value: 8.5E-13
score: 50.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 140..182
score: 9.996021
IPR008984SMAD/FHA domain superfamilySUPERFAMILY49879SMAD/FHA domaincoord: 3..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:422842..431340 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.95.1mRNA_P-littoralis_Contig10.95.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig10 422590..432400 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig10.95.1 ID=prot_P-littoralis_Contig10.95.1|Name=mRNA_P-littoralis_Contig10.95.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=323bp
MTTPLYVLKPISPGYKEVLLPPGTRFIGRSAATGIKSQVVSRKHLEVAVE
RGACKVRYCGKFESEVTINGAPVDKEWTDFPVGARLNLLASTDVMFPYKL
ERYATAATAAAAATKPSSGGGGNSAVYCDQHREMTTRLTCSICSDLYVDP
TELDCQGKHLFCHACIHDFLTSEACTNKCPVCATHISVARRTDVLRAGRK
RNPAGVPVGASHKYQSQAVGLVQDMIEWLIDKRMVDYDDETEWRKRSGLE
PLPPPKGASGGAPKPGPPLPFGGVGGARGPTRGIFSTGNGSGGGAADLIN
LCSDSVVEEDDDDDDSFSDDDF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
IPR008984SMAD_FHA_dom_sf