mRNA_P-littoralis_Contig8.28.2 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig8.28.2 vs. uniprot
Match: D8LB51_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB51_ECTSI) HSP 1 Score: 387 bits (995), Expect = 1.350e-114 Identity = 624/884 (70.59%), Postives = 658/884 (74.43%), Query Frame = 1
Query: 211 GRFREDWSGSSAADSGQRGGRGRGTSTTDRGGRDSYFSRGGRTGEERWGGGGARFGRGRGXXXXXXXXXXXXXXXXGDGAGWGRLDPQAVERGKILAGRIKELGNAGDFEGMLEALEEGPKNAIVCTMAISALGRAGKWKAAVQVLDGMGKGGDGSDRPDAFAFGAAINACGRAGRPVEAVALLAEMPTRKVKPDVVCFGAAIAALKEVAGTQNRSTWGVKGSDHNGGGGDAAEGGDKPIAAAAPDVEPTRAHEKALALIQEMRREGPSPNEQCYASAITACARALDPRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGMEKAYGIRPGLVSYXXXXXXXXXXXRSREAKALLNEMTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGLPVTTRRVEYIQQKIAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKVSRGAIXXXXXXXXAPARAGGKRAVEDGVE---EAGADFLAELRERFAVDTEELASDKDLDLLADDALFAADATAAVAQPPATSALSGQEETEEVAVAQAVGDSQTADFDGDDGI--------------VATAXXXXXXXXXGKEGNDTAML-LEDIKTMKIFDLKIELKDRGLRVSGNKAELLARLEEALQQPA 2808
GR RE+W GSSAA GRDSYFSRGGRTGEERW RF R XXXXXXXXXXXX X WGRLDPQ VE+GK+LA RIKEL A DFEGMLEALEEGPKNAIVCT+AI+ LG+AGKW+ AV+VLDGMGKGGDGSDRPDAFA+ A INACG+AGRPVEAVALL EMPTR+VKPDVVCFG+AI AL EVAGTQNRSTWG KG+D G EGGDKPIA+A D +PTRAHEKAL LIQEMRREGPSPN QCYASAITACARA DPRS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GMEKAYG++ XXXXX R+REAKALLNEM+ER XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RGLPVT RRVEYIQ KI+G XXX +K R + + ED V AGADFL ELR+RFAV+TEELASD DLDLLADD L A A++ + T V V AVGDS + DGDD +A G+E + A L LE K MK+ DLK+ELK RGLRVSGNKAELLARLEEALQQPA
Sbjct: 107 GRAREEWQGSSAASXXXX------XXXXXXXGRDSYFSRGGRTGEERWXXXXGRFSR----XXXXXXXXXXXXGRXXXXXXWGRLDPQTVEKGKMLAARIKELAKARDFEGMLEALEEGPKNAIVCTVAITCLGQAGKWREAVEVLDGMGKGGDGSDRPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFGSAIFALGEVAGTQNRSTWGRKGADEGG------EGGDKPIASAVADPKPTRAHEKALELIQEMRREGPSPNSQCYASAITACARAHDPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGMEKAYGVKXXXXXXXXXXXGLSRAGRAREAKALLNEMSERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLPVTKRRVEYIQAKISGGGGGRSXXX-------------------------------------------RKNDRSRVQE-------------RTKAEDVVATTLRAGADFLEELRQRFAVETEELASDSDLDLLADDVLLAG----AISSGEVKTNGEAGAATTSVDVTGAVGDSPVSGVDGDDRTSEDGRSEADETVAEIADEAVRGDISEQGEEDTNKAQLVLEGFKAMKVTDLKVELKGRGLRVSGNKAELLARLEEALQQPA 914
BLAST of mRNA_P-littoralis_Contig8.28.2 vs. uniprot
Match: A0A6H5KL58_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL58_9PHAE) HSP 1 Score: 326 bits (836), Expect = 1.700e-93 Identity = 598/787 (75.98%), Postives = 634/787 (80.56%), Query Frame = 1
Query: 493 ILAGRIKELGNAGDFEGMLEALEEGPKNAIVCTMAISALGRAGKWKAAVQVLDGMGKGGDGSDRPDAFAFGAAINACGRAGRPVEAVALLAEMPTRKVKPDVVCFGAAIAALKEVAGTQNRSTWGVKGSDHNGGGGDAAEGGDKPIAAAAPDVEPTRAHEKALALIQEMRREGPSPNEQCYASAITACARALDPRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGMEKAYGIRPGLVSYXXXXXXXXXXXRSREAKALLNEMTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGLPVTTRRVEYIQQKIAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKVSRGAIXXXXXXXXAPARAGGKRAVEDGVEEAGADFLAELRERFAVDTEELASDKDLDLLADDALFA-ADATAAVAQPPATSALSGQEETEEVAVAQAVGDSQTADFDGDDGI--------------VATAXXXXXXXXXGKEGNDTAMLLEDIKTMKIFDLKIELKDRGLRVSGNKAELLARLEEALQQPA 2808
+LA RIKEL A DFEGMLEALEEGPKNAIVCT+AI+ LG+AGKW+ AV+VLDGMGKGG SDRPDAFA+ A INACG+AGRPVEAVALL EMPTR+VKPDVVCFG+AI AL EVAGTQNRSTWG KG+ N GG D P+AAA +PTRAHEKAL LIQ+MRREGPSPN QCYASAITACARA DPRS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GMEKAYG++ XXX R+REAKALLNEM+ER XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RGLPVT RRVEYIQ KI+G XXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXX XXXX + GG +A DG EEAGADFL ELR+RFAV+TEELASD DLDLLADD L A A++ V A+ T V V AVGDS + DGDD + +A G++ N ++LE KTMK+ DLK+ELK RGLRVSGNKAELLARLE+ALQQPA
Sbjct: 1 MLAARIKELAKARDFEGMLEALEEGPKNAIVCTVAITCLGQAGKWREAVEVLDGMGKGG--SDRPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFGSAIFALGEVAGTQNRSTWGRKGA--NEGGXXXXXXXDMPMAAAVAGPKPTRAHEKALELIQDMRREGPSPNSQCYASAITACARAHDPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGMEKAYGVKXXXXXXXXXISGLSRAGRAREAKALLNEMSERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLPVTKRRVEYIQAKISGGGGRXXXXXXXXRSRVKERTKAEDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXVAQGKSGKGGSQAA-DGEEEAGADFLEELRQRFAVETEELASDSDLDLLADDVLLAGANSYGEVETNGEAGAV-----TTSVHVTGAVGDSPVSGADGDDRMPEDGRSEADETVAEIADEAVRSDISGQGEDTNKAQLVLEGFKTMKVTDLKVELKGRGLRVSGNKAELLARLEKALQQPA 773 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.28.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig8.28.2 >prot_P-littoralis_Contig8.28.2 ID=prot_P-littoralis_Contig8.28.2|Name=mRNA_P-littoralis_Contig8.28.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=909bp MGFVTTGHTAAFASPSTRWGIPIPTKTSRRGRGGGRGGGRSGRFREDWSGback to top mRNA from alignment at P-littoralis_Contig8:166284..194475- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig8.28.2 ID=mRNA_P-littoralis_Contig8.28.2|Name=mRNA_P-littoralis_Contig8.28.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=28192bp|location=Sequence derived from alignment at P-littoralis_Contig8:166284..194475- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig8:166284..194475- >mRNA_P-littoralis_Contig8.28.2 ID=mRNA_P-littoralis_Contig8.28.2|Name=mRNA_P-littoralis_Contig8.28.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2727bp|location=Sequence derived from alignment at P-littoralis_Contig8:166284..194475- (Pylaiella littoralis U1_48)back to top |