mRNA_P-littoralis_Contig8.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.14.1
Unique NamemRNA_P-littoralis_Contig8.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig8.14.1 vs. uniprot
Match: D8LB45_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB45_ECTSI)

HSP 1 Score: 288 bits (737), Expect = 1.370e-89
Identity = 196/315 (62.22%), Postives = 216/315 (68.57%), Query Frame = 2 
Query:   95 MVRKKACYGPRCYVLMIPIASMLLLPLRDSFAYHPTGGASISSRRFSHQPQQQQQRPLLPLLPRCTRLPTRRTPSFLRPLKGSGTEQDVTSNDDXXXXXXXXSKLDQSEAPFETTAAAXXXXXXXXXXXXXXXXXXXVPAVKAVEEDDGEDRVEVRAGSTGAALVDPTWDLEAEVASFEYAPPMTVRKFKTMQDRRVPVSIKYSGGGGFKRYFEEIAIVLKRHFPDIIIDREIVEVMSTREEQVFEIRIDGKLVCAKRRGKPGVFLHMDTFVQAIRKARQRRRPGSIVYGDQETYQNVKALTDQRTADDSLERDF 1039
            M RK+ C+ PRC +LM+ + S+LLLP R+  A+H          R S        RP  P  P  T L  R  P    PLK S   QD T NDD      XX                XXXXXXXXXXXXXXXX       +A    +GE + E   G+  AA+ D    LEA VA+FE+APPMTVRKFKTMQDRRVPVSIKYSGGGGFKRYFEEIAIVLKRHFPD++IDREIVEV STREE+VFEIRIDGKLVCAKRRGKPGVFLHM+TF QAIRKARQRRRPG+IVYGDQETY NVKALTDQRTA DSLERDF
Sbjct:    1 MSRKQGCFEPRCLLLML-VPSLLLLPDRNPSAFHHARVPLDRCLRGSIA------RPAPP--PTWTPLARRIGP----PLKESEGAQDATGNDDKAVPGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEG----EATNPVEGEQQEEGAVGAA-AAVDDANLGLEARVANFEFAPPMTVRKFKTMQDRRVPVSIKYSGGGGFKRYFEEIAIVLKRHFPDVLIDREIVEVSSTREEEVFEIRIDGKLVCAKRRGKPGVFLHMETFAQAIRKARQRRRPGAIVYGDQETYMNVKALTDQRTAGDSLERDF 297
[Close]
BLAST of mRNA_P-littoralis_Contig8.14.1 vs. uniprot
Match: A0A7S3NPB0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPB0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.870e-20
Identity = 55/118 (46.61%), Postives = 77/118 (65.25%), Query Frame = 2 
Query:  626 FEYAPPMTVRKFKTMQDRRVPVSIKYSGGGG-FKRYFEEIAIVLKRHFPDIIIDREIVEVMSTREEQVFEIRIDGKLVCAKRRGKPGVFLHMDTFVQAIRKARQRRRPGSIVYGDQET 976
            F  APPMTV K+  MQ +RV + + YSGGG  F + F  +  ++   FPD+I++++I  V STR+   F+I ID KL+ +K   + GVFL M T   AI +AR+ RRPG IVYGD+E+
Sbjct:   38 FSLAPPMTVGKYLKMQQKRVRLVVVYSGGGRHFTKVFLRMKQIISLKFPDVIVEKKIRPVRSTRDTGKFDIFIDDKLLWSKPPERDGVFLSMRTLNAAIIRARRLRRPGQIVYGDRES 155
[Close]
BLAST of mRNA_P-littoralis_Contig8.14.1 vs. uniprot
Match: A0A835Z5N6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.510e-18
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 2 
Query:  668 MQDRRVPVSIKYSGGGGFKRYFEEIAIVLKRHFPDIIIDREIVEVMSTREEQVFEIRIDGKLVCAKRRGKPGVFLHMDTFVQAIRKARQRRRPGSIVYGDQETY 979
            M +RRV V+I+YSG GG+  Y +    ++K   PD++I RE++ V+  R E  F++ +DG++V +KRR +  V+L M    +AIRK R+ RR G  VYG+  T+
Sbjct:    1 MTERRVLVTIQYSGFGGYAVYCDAAEQIIKEQCPDVLIKREVLPVLGPRSEGAFDLLVDGEVVYSKRRDRSSVYLQMSVIKEAIRKQRKERRHGKAVYGEPSTF 104
[Close]
BLAST of mRNA_P-littoralis_Contig8.14.1 vs. uniprot
Match: B7FP46_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FP46_PHATC)

HSP 1 Score: 84.3 bits (207), Expect = 1.050e-14
Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 2 
Query:  635 APPMTVRKFKTMQDRRVPVSIKYSGGGGFKRYFEEIAIVLKRHFPDIIIDREIVEVMSTRE--EQVFEIRIDGKLVCAKRRGKP------------GVFLHMDTFVQAIRKARQRRRPGSIVYGD 967
            APP++  KF  MQD+RV V+I+YS G G K YF  +A  LK    D+II+R I+  +   E  E  FE+ +DGK+V  K R +              VF+ M      I +AR+RRRP ++VYG+
Sbjct:  100 APPLSYNKFLIMQDKRVVVTIRYSSGAGLKPYFLTVAKKLKASHTDVIIERRILPSVDKDEGEEATFEVLVDGKIVVGKGRPRKQKVARVDMSWARSVFVSMQELDLNISRARRRRRPSTMVYGE 224
[Close]
BLAST of mRNA_P-littoralis_Contig8.14.1 vs. uniprot
Match: A0A7R9YEK5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEK5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.970e-14
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 2 
Query:  791 IVEVMSTREEQVFEIRIDGKLVCAKRRGKPGVFLHMDTFVQAIRKARQRRRPGSIVYGDQETYQNVKALTDQRTADD 1021
            I+EV S R+E  FEI +DGKLV AKR+ KPGV+L M T  QAI +AR+RRRP S+VYGD  TY            DD
Sbjct:    3 ILEVRSPRDEDQFEIIVDGKLVYAKRKDKPGVYLQMRTISQAISRARRRRRPNSVVYGDPSTYSVSMGRLGSNEQDD 79
[Close]
BLAST of mRNA_P-littoralis_Contig8.14.1 vs. uniprot
Match: A0A7S1G105_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G105_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.020e-14
Identity = 46/130 (35.38%), Postives = 76/130 (58.46%), Query Frame = 2 
Query:  635 APPMTVRKFKTMQDRRVPVSIKYSGGGGFKRYFEEIAIVLKRHFPDIIIDREIVEVMSTREEQVFEIRIDGKLVCAKRR-----------GKPGVFLHMDTFVQAIRKARQRRRPGSIVYGDQETYQNVK 991
            +PP++ RKF TMQ++RV V+I+Y+   G K YF   A ++K+ FPD++I++ I+       ++VF I +DGK+V   ++           G   VF+ ++    AI KAR++RRP +  YGD     +V+
Sbjct:  104 SPPVSFRKFLTMQEKRVIVTIQYNANSGLKPYFLTTAQIIKQSFPDVVIEKLILPEPENSLDRVFTISVDGKVVVGNKQRRGMQEPSVIDGNRPVFVSLEEMEFAIAKARRKRRPNTS-YGDSHNAADVR 232
[Close]
BLAST of mRNA_P-littoralis_Contig8.14.1 vs. uniprot
Match: A0A6S8S905_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8S905_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.610e-11
Identity = 46/134 (34.33%), Postives = 72/134 (53.73%), Query Frame = 2 
Query:  626 FEYAPPMTVRKFKTMQDRRVPVSIKYSGGG-----GFKRYFEEIAIVLKRHFPDIIIDREIVEVMSTREEQVFEIRIDGKLVCAKRRGKPGVFLHMDTFVQAIRKARQRRRPGSIVYG---DQETYQNVKALTD 1003
            F +APP+++ K+ TMQ +RV V I Y+ G        +R F     V++  +PD  I+     V+ T ++  F+I +D K V +K R + GV+L      + I +AR+ RRP + VYG   D E + N +A  D
Sbjct:   37 FNFAPPLSLEKWDTMQSKRVRVQILYTVGDEKDQTNHERTFLRTKRVIQDRYPDCFIEG----VVLTNQDDAFKILVDAKGVYSKPREREGVYLSTKVLDREIARARKARRPTTTVYGGADDLENFSNGRAAAD 166
[Close]
BLAST of mRNA_P-littoralis_Contig8.14.1 vs. uniprot
Match: A0A7S2Y9X5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y9X5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.160e-10
Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 2 
Query:  617 VASFEYAPPMTVRKFKTMQDRRVPVSIKYSGGGGFKRYFEEIAIVLKRHFPDIIIDREIVEVMST--REEQVFEIRIDGKLVCAKR--RGKPG---------VFLHMDTFVQAIRKARQRRRPGSIVYG 964
            +     APP++  K+ TMQD+RV V+I+YSG  G K YF  +A  LK   PD++I+R I+  +     +E  FE+ +D K+V  +   RGK           VF+ M     AI +AR   RP +  YG
Sbjct:  118 IPDLNQAPPVSFEKYLTMQDKRVVVTIRYSGDAGLKPYFLTVAKKLKASHPDVMIERRILADVDDDDEDEATFEVLVDSKIVIGRGIGRGKKQSLSKAEPTVVFVSMQELDIAISRARXXXRP-TTTYG 245
[Close]
BLAST of mRNA_P-littoralis_Contig8.14.1 vs. uniprot
Match: A0A7S1Y8J0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y8J0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.340e-7
Identity = 42/129 (32.56%), Postives = 63/129 (48.84%), Query Frame = 2 
Query:  644 MTVRKFKTMQDRRVPVSIKYSGGGGFKRYFEEIAIVLKRHFPDIIIDREIVEVMST--REEQVFEIRIDGKLVCAKRR--------------------GKPGVFLHMDTFVQAIRKARQRRRPGSIVYG 964
            ++ +K+ TMQ++RV V+I+YSG  G K Y+  +A  LKR  PDI++ + I+       R    FE+ +D ++V  K                      G   VF+       AI KAR+RRRP +  YG
Sbjct:    1 LSFKKYMTMQEKRVVVTIRYSGSSGLKPYYLTVARKLKRTHPDILLAKRILPHAKEDDRFSPTFEVLVDNRVVVGKGNCKIQKLGLNSNADTTNTDSTGGLSVFVSFQELDAAIGKARRRRRP-TTAYG 128
[Close]
BLAST of mRNA_P-littoralis_Contig8.14.1 vs. uniprot
Match: A0A7S0FBI6_9STRA (Hypothetical protein n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0FBI6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.020e-6
Identity = 42/126 (33.33%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:  644 MTVRKFKTMQDRRVPVSIKYSGGGGFKRYFEEIAIVLKRHFPDIIIDREIVEVMSTRE--------EQVFEIRIDGKLVC-------AKRRGKPG-------VFLHMDTFVQAIRKARQRRRPGSI 955
            ++ RK+ TMQ++RV V+I+YSG  G K  +   A  +K+  PD++I R+IV   S           ++VFEI +DGK V        ++++G          VF+ M     AI K+R++RRP ++
Sbjct:  167 LSFRKYLTMQEKRVVVTIRYSGSSGLKSMYLTAAAKIKQLHPDVLIIRDIVTEGSDENGTGSQNAGKKVFEILVDGKRVAGDKDLNNSRQKGNNMGMNTSGIVFVSMRELDVAINKSRKKRRPNTV 292
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LB45_ECTSI1.370e-8962.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3NPB0_9STRA1.870e-2046.61Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A835Z5N6_9STRA4.510e-1841.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B7FP46_PHATC1.050e-1440.00Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7R9YEK5_9STRA2.970e-1454.55Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1G105_9STRA6.020e-1435.38Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6S8S905_9STRA2.610e-1134.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2Y9X5_9STRA4.160e-1036.43Hypothetical protein (Fragment) n=2 Tax=Amphiprora... [more]
A0A7S1Y8J0_9STRA2.340e-732.56Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S0FBI6_9STRA1.020e-633.33Hypothetical protein n=1 Tax=Rhizosolenia setigera... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:94644..103592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB45
Model size1760
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons5
Evalue1.36e-93
EggNOG OGs2CBDN@1|root,2SEBZ@2759|Eukaryota
Cds size948
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.14.1prot_P-littoralis_Contig8.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 95362..103498 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791631.7740357-UTR-P-littoralis_Contig8:94643..953611680791631.7740357-UTR-P-littoralis_Contig8:94643..95361Pylaiella littoralis U1_48UTRP-littoralis_Contig8 94644..95361 -
1680791631.8497088-UTR-P-littoralis_Contig8:103498..1035921680791631.8497088-UTR-P-littoralis_Contig8:103498..103592Pylaiella littoralis U1_48UTRP-littoralis_Contig8 103499..103592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791631.788716-CDS-P-littoralis_Contig8:95361..954901680791631.788716-CDS-P-littoralis_Contig8:95361..95490Pylaiella littoralis U1_48CDSP-littoralis_Contig8 95362..95490 -
1680791631.80052-CDS-P-littoralis_Contig8:97421..975351680791631.80052-CDS-P-littoralis_Contig8:97421..97535Pylaiella littoralis U1_48CDSP-littoralis_Contig8 97422..97535 -
1680791631.8107088-CDS-P-littoralis_Contig8:98304..984021680791631.8107088-CDS-P-littoralis_Contig8:98304..98402Pylaiella littoralis U1_48CDSP-littoralis_Contig8 98305..98402 -
1680791631.8211865-CDS-P-littoralis_Contig8:99139..992831680791631.8211865-CDS-P-littoralis_Contig8:99139..99283Pylaiella littoralis U1_48CDSP-littoralis_Contig8 99140..99283 -
1680791631.837486-CDS-P-littoralis_Contig8:103035..1034981680791631.837486-CDS-P-littoralis_Contig8:103035..103498Pylaiella littoralis U1_48CDSP-littoralis_Contig8 103036..103498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.14.1

>prot_P-littoralis_Contig8.14.1 ID=prot_P-littoralis_Contig8.14.1|Name=mRNA_P-littoralis_Contig8.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=316bp
MVRKKACYGPRCYVLMIPIASMLLLPLRDSFAYHPTGGASISSRRFSHQP
QQQQQRPLLPLLPRCTRLPTRRTPSFLRPLKGSGTEQDVTSNDDNDDEED
DSSKLDQSEAPFETTAAAATAAAAEAEAEAAEAAEAEVPAVKAVEEDDGE
DRVEVRAGSTGAALVDPTWDLEAEVASFEYAPPMTVRKFKTMQDRRVPVS
IKYSGGGGFKRYFEEIAIVLKRHFPDIIIDREIVEVMSTREEQVFEIRID
GKLVCAKRRGKPGVFLHMDTFVQAIRKARQRRRPGSIVYGDQETYQNVKA
LTDQRTADDSLERDF*
back to top

mRNA from alignment at P-littoralis_Contig8:94644..103592-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.14.1 ID=mRNA_P-littoralis_Contig8.14.1|Name=mRNA_P-littoralis_Contig8.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8949bp|location=Sequence derived from alignment at P-littoralis_Contig8:94644..103592- (Pylaiella littoralis U1_48)
GATAAATTAGGGCCATTATCCATAGGTGCAGAAACCAAAGGTGTGGTGTG
TTCTGTTGGTGAACACCAGGTCTCGGCACCGCAGGAGGTAGGTGATGGTC
AGAAAAAAGGCTTGCTACGGACCAAGATGTTACGTGCTCATGATCCCGAT
AGCTTCAATGCTCTTGTTGCCGTTGCGAGATTCGTTCGCATATCATCCCA
CCGGAGGAGCGAGCATCTCGTCGAGAAGATTCAGTCATCAGCCACAGCAG
CAGCAGCAGCGCCCACTACTACCACTACTACCCCGCTGCACACGGCTACC
AACACGGCGAACTCCCTCCTTTCTGCGGCCTTTGAAGGGCTCGGGAACGG
AACAGGACGTTACCAGCAACGACGACAACGACGACGAAGAAGATGACAGC
AGTAAATTGGACCAGTCTGAGGCGCCTTTTGAGACGACAGCAGCAGCAGC
AACAGCAGCAGCAGCAGAGGCAGAGGCAGAAGCAGCAGAAGCAGCAGAAG
CAGAGGTCCCGGCTGTGAAGGCAGTAGAGGAGGACGATGGGGAGGATCGC
GTCGAAGGTATGACAATAGCACTGGTTGCTGGTTGATAACAAGGCGGTAC
AGCCAGCAGAGGTAGGGCGTGATTTGTGGGGGCTCTAGTCTAATTCCGAT
CTTAACAGCAGTAGTACTAACCAAAAATGTAATCTGTGCACAGAAGGGCA
TGAGAAGGGAATCATATTGGAGTCTACCTTCCAATGTGTTAGTTCCAACG
TTGCTATAAAATCGTGTTTTACAGGACTACCTTGTACAGAGCAGTAGAAG
ATTTGCGGTTGTCCGTTTGTTTGTTGAGGACTGGTTTACCGGGCGATTTT
AAAAAGCAAAAAAAATAGGGGTCGTTCAGGGTCGGCTCCAGTCGCAAGAA
CGTTTTTTCTTCTCATTTTCCAAGATGTTTTTCGGAAATCGACCTTCCTG
TGTAGTGAGTGGTGCCTGATCGAAAGCTTGAAACAAGTGTAGAAGGTGCC
TAAGTACAGTACAGTAGTGACCTGCGTGTTGGCAAGCTCAGATCTACCTC
TGGGGTCGAGATGTCGGAGGTCGTGATGATGGTTCAAGCAGTCGGAAAAT
CTAAAATCGTTCGCATTTCAGCCCGACGCGTCATCTTGGCACTGCTTTAC
TGTAGTACTCCGAGTATTATAGCCGTCATGGGTCTTAAATCCCCTGAAAC
CGTGGGTCATGCGAGACAGCTACTTTAGTGGAATGAGCTTCTGCTGCAGA
CCAGCATTTCAGACATCAGGGCCCATGGCAATAAGTTATGAGTATACAGC
GGAGGATTGTATGTTTCGGGCTGAGATGCGGACGGTTTCTGGACTGCTGT
ACCACATGTCTTCGACCACCGACATCTCGGCCCCTGCGGTAGATCTGAGC
GTCCCACCACGCAGGTCACTACTACGTTGTACAGTACCTTCTACTTGTTT
CATGCTTTCGATTAGGCACCGCTCTGCTACACTTTATTATTGAGCGCCCT
CTCGTGCTCGCTCTCTTATCTTGAATTTAGAACTGAGTGGGCTTAACATA
TTGGATTTTCTCCAGACTTTTGCGAAAATATGGCGGAGTTCGAAACCAAA
ATATGCGTGTAAACGAGGACACCTCGATCGAGCGCCCCTCTCACGCATTT
GTTCCGGCTCCAACCCTCTTGTGCTGGTCTGACAACCCTATCGTACTTGT
ATTGCGTGGTGTGTGAGTGCTTTTTCCGTTCGAGGTGCCGACTTCGAAAA
AGTGGCTTTCGCGCATGTGTGTGTGCGTGTGTCTTCACATTAAAAATCAT
TCCGATCTCTCCTCAGTACCTTCAAATGCCCGTTCTCCTCCGATCATGGA
CGATTTCCGTGGTCACAGGCTGCTTGGCCCCAAAAGGGTACAAAGTACGC
GGGATATCCCATCAATCCACTAAAGGAACGACAAGGAAACTCCGGCAAAA
CACAACGGACCCCGAAATATCACACAACGCTACAAAAAATAGAACAAACA
CAGTTTGAAAAAAGGGAGCTTGGTCCAGAGCAAAGTAAAAAATGAAATAA
AATACTCATCGAAAAGTCGTCCAGACCGGACCCTTGACGCCTACGGCGAA
GCAGATTGCGATCTATGGCCCCAACAGCTATTTTAAGGCAATTTTTCTGG
TGGTTTACAGGCTCCCTCGAGGTAAAGCCACGTTTGTGTGCAAATCCCTG
ACTCTTCGTTCAGGTTTTTTTTTAGGCGAAACGCCATCCCTCTTGAAATC
CTTTTTTTTTGTACTGAACCCAGCGTAGCCTTTTTTTTGGTCCCACAGAG
GGTGCGCACGGTCTGCCAAACAAACCGGTTGTATTACAGGTCAGCCCGTT
TCATTTGGCGATCACTCAGTCTACAATTTCGCCGCCGATGGGCCAAACAT
CGAAACATTCGTGCCGGGAATCAGTTCGTGCCTGAATGAAGTGCATGTGT
GTTGTGTATTTGTGGTTTCACTCCTGCTCATCCCATGCGTGTACGTACAG
CAGTTAACGCTATCGCAGCAATATCCAGCAGGAAAATTCGCTCCTACACC
CGGAGGAAGTACTTTCCCCACCTGCCCCACCTGCGGGCCCCCGTGTCTCT
CCTTCGTGCGCTCGGCGATGCATGTGCAAACGTCATGCGTTACATTTTAC
GCGGACTTTTCTCTCGATACAGTAGAAATCTCGTCGAATTTCGGTACAAC
CAGGAAACACACTGCTGTAGCTTTCTTTCCCTCTCTCTATTTGTGTTACC
AGGGAAGCAATTTTACTGTAGTTACGCATGCATAGCCCATGACACATCCT
TGCACTCTCCCCGCCCCCCTCCCGAGGCTTAACTTAGTCACGAGGAACAA
GTCGCCGATGTAACCATGTACAGCAACTGCTGTTGGAGTGCCTCAAGCCT
CCATCAAATCAAAATTTTCAATGCATTCCGCCCTCTCTACTGCTGTATGG
CCTTTGTTTACTACCTGGTACAGCAGGAAATATAAACCTCGAAGCAATTC
TCGAAGTACGAAGGTTAAGGAGAAATAGTTATGCCTCATCGCCATTGCTA
CTTCGTCTTCATGGAACTCGTGATACCTCCGTGTCGAAACATCCGCAGCG
GTAATACACGAACTATTTCGTGTTCGCTCTCTCTCTCTCTCTCTCCTCTG
GCCGTTTTCTCACTATCATGCGGTGGGGGCTACGCAGATAGCTCACTTTG
AGGTCGGAATACCTTGGCACACCCCTCCCTCTCTTGAAACCGAAGCCCCT
CACTCTGTAACTTACAGTAGAGTGTTTGCGAACTCACAAATCGATTTGGG
ACTGGGGACTTTTTTATTTTTGTATTTCCATACAAACACCCAGTGTGTGC
GTCTCTGGAGCATTTTTTTTTCCAACTCACCAAGGTCGGAATATGGCGGA
ACACAGGATCATCTCACAAATTTGGGAGTGACCTTAGGGACCAGATCAGC
GAGTCGCAGCGATTGGTCAAGTACGAAGAGAGAGAGAGAGAGAGGAGGGA
GAGAAGAAAGAGAAGAGAGAGACAATGAGGAATGCCGAGAGGTATCATCA
GTTTCATGATACTTCGTGCTGTACACGAAGTAGAGAACAAGAGGGTTCGT
CCACCAAGAAAGGGGATACCGCTTCGTTGCGTCTCCGGGGTAGCAGAAGA
CGCACGCACGTGACGTTGGGCACGGTGGGACGAAAGCTCCCTGTGTGCGC
CACCCGAAGCTAAAGCAGCAACACCGCCGTTATGCTCCTTGAGAGCCTCT
TCTCGGGGCAGCGCGTACGAGCGAGTAGAAGCGCATGATGACCTTGCTGT
GCTGTTGTTGTGCCCCTGTGCACGACGAGCTGTAACTCAAAACAACACCG
CCGTTCGTTATGTTGGCATGACTGCAGCAACGGAAGAACGGAAGCCATGC
TCGCGAGGATGTACCGGGACGTGAGCATGTACACGAGTCGACAGAGAACG
AGAGAGAACAAAGGGGTGGACACACTTTCTTTTTTCAAAAACAAACCCTC
TCTTCTCCAGCAGCAGCAGTACAGCAGTTAGCTGAACTGCTGAACTCAGG
TGGTATGTGTTCCTTATGATAGTGTACAGCAGTAAGCTTCCCACGACTTC
TCTTCCTTTTTTATTTTTTTACATAGGAAAAAAAATAAGAAAGTAAACAC
GCTCTCTAATTGGCCCGGAGAAACCTACCTCCGAACTCACAATTTTGTGA
GTTCGCAAACTCTCTAGTTCAACACGTTTTCCCTTGTACTACTCGTACTG
TTTTATGATAAAATCTAAACCTACCTCGCACCCTTGTGTTTTGTCAAATT
GTTCAGCAGTACGTGCGGGGAGCACCGGCGCCGCCCTAGTCGACCCCACT
TGGGATCTGGAGGCGGAAGTAGCGAGTTTTGAATATGCCCCGCCGATGAC
CGTTCGCAAATTCAAGACCATGCAGGACCGTCGTGTGCCGGTTTCTATAA
AATGTGAGCTCCAATCGTGTCTGTCCACTACCTTTATCGCTTCGACTAAT
TTCTTGTGCCCGACCAACCCTTACATGCAGGGCAGCCTTCACGATTGGTC
GAAAACGGTTTCGAAACGCAGGGAAAGCACAACAGGTGTAGGCATGTGAC
AACATGTGCGTCCACGCGCGTGTATCTCCCCTCTTGCTTCGAGCAAGGCT
CAAGAAAAGTTTTTTTTTTTCGTTTTTGTGTCTGTGCACAGGTGCCTGTT
GCGTCTAGTTTCGTCTGAGTTTCGCGTTTTATACGTGCAGCGTCGGGCAT
TCGTCGACCCGACATGTGTATCCGTGCCGCAACAGCTCGAGAGAGATATC
ATGGTGATCTTGCTTTTGCTCCTCAGGGTCTGTTCGCTTTTTTATACCCG
CGGTGTCTGTCCCGTCCCGCTGCTGTGAAATGCATTGCCTACGATCTATG
ATACCGCTGCCGTACACCCTGGCCCGTCGGTATTCCTTAGTGGAACAGCG
ACCCCGTTTTTTTTTGCAGACGTGGGTGTGTCTTGCAGGTAATCATATCA
TCGCATAGCTTCTTCGCTTCCTTTTTTTTTTGTTGCGAGCTTACCGGCGT
CATTCTTCTTCACTACTCCTCCCTCCTCTCGTGTACTCGTTGTTCACTTG
CCGCCACACCCGTGGACTGCTGTTCCGCATGTCTTAATTTGTTATTTGTG
CCCGCCGTTATGCGCCGTTACCGCAACGCGGCGGGAGCAGACTCAGGGGG
GGGTGGATTCAAGCGATACTTCGAGGAGATCGCTATCGTTCTCAAGCGGC
ACTTTCCGGACATCATCATCGACAGGGAAATCGTCGAGGTTTGTTGCATG
ATGTTGTGTGATATCATATCATACCTGGTACACTCCGAGTACTATTTTTT
TGAAACGAGTATGTCACGTGTAAGAAAGGTGGTCGTTCGCATGGGCTGTG
CGGCATGGGTGCATGCACGTGTACGTGTTGTCGGAATAGCACGTTGCGGT
GCTTTGAAAAGTACAGTAGATGTACCGGAGCTTGCTGGTATCTCGCGTGT
TGGTGATGTGTTGTGGCTCATGTGTGTGGGTGTGTCACGTGTACGTGTGC
GTGTGCGTGGGCGTGTGCGTGTGTGCGCGTGTGCTTGCTTTCCGAGACGG
GTAGAGATCACGGGCGTGCACTGCTGTGTCGCTCCCCGACTAAGGCCGGA
TTTCGTCGGAAAGTCGCTCCGGCTTTACCGAGCAATATTCCATTACTCGA
GATTTTTTCGACAGGCAATGCAAAAAGCAAACCGAGTTTGCTACTCATAT
CCTCACATCGTTACCTGGTATTTTGCGACCGCCAAAGGGAACGGCTGATC
ATACACACTTACTTGCATCGAGATGATTCGAAAATTGAGTTTTAACTTAA
GAAAAACATAATTCGACGAACTTCGAAGGGTCCCATTTACTTCACGTTCG
AAGAATGGCTTCGAGCTGGTATGATGAAGAGAAGACGGCCAGCACAGCAA
AGATTACTGGTGGGAGGAAAGTGTTTCCCTCTGGAGTTTTTGCTGATATA
TCTGTCCATTTTCGCTGCTGCTGCTGCTGCTGCTGCTGTATGATAATGAA
TGAACAGGTGATGTCGACGCGTGAGGAGCAGGTGTTCGAGATAAGAATCG
ACGGGAAGCTGGTGTGCGCTAAGCGAAGAGGGAAGCCGGGGGTGTTTTTG
CACATGGACACGTTTGTGCAGGTGCGAACCCCCCACGAAGCCATCCCCAT
CCCCATCCCCATCCTAATCCGAGCTTGTGAGCGCATTCCGTTGCAAACAA
AGCACATGTCGGAATCAAGCATGTGCCCTTTCGAGGGCTGGGCCAGTCGG
AAATACTGCCGCCATCGTTCCGCTCGTCGGCAGGGGCAGCCCTCAGCGGA
TTCGATACCGTAGTCGAACACCACGCACCTGCCCCGCTGGCATCCGTACC
ACCGGGAACGTTCAGCGACACCTAGAGGATAGACCCACAGCAGTACCGCT
GTAGTACATACTTCGAAGTATCATACACATTTTGAAGCAACGCTTAGCGG
GAGCCGTCCCGGTAGTCTCAGGGGCTCCGTGGTGATTTTTTGGCTTCAAC
GGTATCAGGAAAAGTCCCACATCCGAACTTCTAGAAAAAGAAAATCCCAC
TTTCAACTCTCTGAACTTATGATTTTTTGGCGTCAACGGTATATTCGCTC
CATATACCACCCTATTCCGTTGAAGCCTTCGAGTGAAAGTGCCAGCATCG
GATTATCGCAATCCCGACGGCTTGATTTGTACTCGATGGGCTTGGCATCC
CTGCAGCTTCTCAGGAGAGGCCACATCATCAAGCACGAAACAGCGCGCGT
ATGGATTCCTCCAGTTAGTGAACAAATAAGGGATGCGCCAGCAAAAACTG
CGTGTTGATCATTTTGTCATCTGTGAAGGTAGACACGCTGATCGATACCC
CCCCCCTTACCACTCCGCCGCACCCCCTTTTGCCTGAACACCCACCACCG
ACCCAACACGACCAAACCTGCAGAACCCTATAACCCTAACCCGAACCGTC
ACGAGAAGTAAGTGGATTACTGGAAAGGTGCTAGGTCGCTGTTTCAGCTC
AAAAAACGTTTGCATTTATTGTATGTGTCCCCAATTGGGAACATGTAGAG
AAATCTCGCGAGATGGAGATGCTCTAGTCGGGGTTCGTGTACCATCTTCC
CGCATTCAATTAGGGGGAAGAGAAATGACCAACTCACACAACTATGCGTC
CGTTACGGATATCACAGCGCGAGCTCGTCACAAGCAACCGAGCACGTCAC
CAGCAACCACGGCCCACGCAAAAGTCACGGCCTACCGATGTGGAGTGTGA
GGGGCGATCCGTGCCTTGGCCGATGCAGCAGGCAGCCAGAAACGTTTCTA
GAAATACTCTGGTGAATTCGTGAAATTGCATCTACGTAGATGCATGTCAA
ATGCACCAAGCTGGGAGACCTGCTGGGTGCGTTTATGCGACGACGCCAAC
GTTGTTTCGCGTGTGTTATCATATTCCCGATGGACAAACGGATCGGATGC
GAGTGTTGCTGGTTTTACCAGGCGGTTTTCAACGCCAAAATGATGGCGTC
GTTTTCATCGCCTGCGTCTGATAGAGCAGGTGCTTAATCTGCGTCCCGGA
GCAAGGGCAAGCTCCTCGAAAAATGTTTTCGGGGTGATCCAGCAGTAGTT
GCCTCCCCCTCAAAATTCAGATCCACATGTGTCAAGTGTCAATCCCCACC
TCCACATCGAAGTTTTGTATTTTGCGAACCGCCTCTTCAACAAAACAAAC
GTTCACGGCCCGGCGGAGCCTTAAAGCGAGAGGGTAAACTTGGGGAATCC
TTGTTCCCCGAACCCCCTCCCCTCTGACTTTCTACACGCTGCCTACATGG
TTTCAGGAGCCCGTCTGGCTCACGAGGAGGGAAGGGAAAAGTTCGTGATC
GCGCTGAAAATCGAACGTCTTCGATACCTGGCATACGGCAGTATAGATAC
TGGACCTGGGCAACCAATCGTGGATCAACTCGAACACGCCCCCCCCTCTC
TCTATACCCCCCCCCCCCCCATGACGAACATGCTATGTGCCCCCTGCCCG
TCTGACGTTGTTCCGGAACGACACATTTTACCGTACGGACTGCCTGTCGC
AGGCTATTCGCAAGGCGAGGCAGCGAAGACGGCCGGGGTCCATCGTGTAC
GGGGACCAGGAGACGTACCAAAACGTGAAGGCGCTCACCGACCAGAGGAC
AGCGGACGACTCCTTAGAGCGAGACTTCTAAGGACCGACTCCGCTGCTGC
TGCTGCTGCTGCATGAGAGCATGAGGCTGACACCGCGTGCTCTCGTCGTC
CGCCCGTATATACTTTTTTCATGGAGTGCCTTTTCTCCAGAGGGTCGCTC
CTCGGCTGTACTACTGTTCGTACATTTTCTACTAGAAAAAAGTGATTATG
TGAGAGAGACGATGCTCCTCGAACCGTGAAGGGTTTCGTCACAACACCGA
AAAGCGGCTCTAAAAAAAGTGGTCCGGACATGGCGGTATTCTTGACGAAA
AACGAACGCTTGACGTTCATTTGAAATTGCTGTTTTTCTCCGCTGGGGAA
TTACCGGTATTGCTTGCGGGGCGGAGTGAGAGAGATGCTTGGAGGAGTAA
AGCAAACATGCCACCTTTCGTGTCGGAAAGATATGGCACACCACATCGCA
CCGCCTGCATCTAGGAAGCTCAAGGCTTCGAGGTATACGCCGGGCGTCCG
ACAGCATCACCTGCGTTGGCATGTCATTGACGATTGTTGTGGTAGGAAAA
GGTGAAGGGAGACACCGACAGTTTTCTTGCTGGACTCGCGGACGAGCGCC
GCTTTCCCGGTCCCTTGACAGGTGTCGAATCGACGTATCGTATCATCACG
TGATAACCTGTTTTGGGTGAATGATTGCCACCTGCACTGAAAGCACAATC
TGAACGCTTCGTACCTTTCACCCAACACCTGCCGCTGAATGAATGAGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig8:94644..103592-

>mRNA_P-littoralis_Contig8.14.1 ID=mRNA_P-littoralis_Contig8.14.1|Name=mRNA_P-littoralis_Contig8.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=948bp|location=Sequence derived from alignment at P-littoralis_Contig8:94644..103592- (Pylaiella littoralis U1_48)
ATGGTCAGAAAAAAGGCTTGCTACGGACCAAGATGTTACGTGCTCATGAT
CCCGATAGCTTCAATGCTCTTGTTGCCGTTGCGAGATTCGTTCGCATATC
ATCCCACCGGAGGAGCGAGCATCTCGTCGAGAAGATTCAGTCATCAGCCA
CAGCAGCAGCAGCAGCGCCCACTACTACCACTACTACCCCGCTGCACACG
GCTACCAACACGGCGAACTCCCTCCTTTCTGCGGCCTTTGAAGGGCTCGG
GAACGGAACAGGACGTTACCAGCAACGACGACAACGACGACGAAGAAGAT
GACAGCAGTAAATTGGACCAGTCTGAGGCGCCTTTTGAGACGACAGCAGC
AGCAGCAACAGCAGCAGCAGCAGAGGCAGAGGCAGAAGCAGCAGAAGCAG
CAGAAGCAGAGGTCCCGGCTGTGAAGGCAGTAGAGGAGGACGATGGGGAG
GATCGCGTCGAAGTACGTGCGGGGAGCACCGGCGCCGCCCTAGTCGACCC
CACTTGGGATCTGGAGGCGGAAGTAGCGAGTTTTGAATATGCCCCGCCGA
TGACCGTTCGCAAATTCAAGACCATGCAGGACCGTCGTGTGCCGGTTTCT
ATAAAATACTCAGGGGGGGGTGGATTCAAGCGATACTTCGAGGAGATCGC
TATCGTTCTCAAGCGGCACTTTCCGGACATCATCATCGACAGGGAAATCG
TCGAGGTGATGTCGACGCGTGAGGAGCAGGTGTTCGAGATAAGAATCGAC
GGGAAGCTGGTGTGCGCTAAGCGAAGAGGGAAGCCGGGGGTGTTTTTGCA
CATGGACACGTTTGTGCAGGCTATTCGCAAGGCGAGGCAGCGAAGACGGC
CGGGGTCCATCGTGTACGGGGACCAGGAGACGTACCAAAACGTGAAGGCG
CTCACCGACCAGAGGACAGCGGACGACTCCTTAGAGCGAGACTTCTAA
back to top