mRNA_P-littoralis_Contig8.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.2.1
Unique NamemRNA_P-littoralis_Contig8.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:26936..28522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size819
Hectar predicted targeting categoryother localisation
Exons2
Cds size819
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791631.3736222-CDS-P-littoralis_Contig8:26935..276761680791631.3736222-CDS-P-littoralis_Contig8:26935..27676Pylaiella littoralis U1_48CDSP-littoralis_Contig8 26936..27676 -
1680791631.3861957-CDS-P-littoralis_Contig8:28444..285221680791631.3861957-CDS-P-littoralis_Contig8:28444..28522Pylaiella littoralis U1_48CDSP-littoralis_Contig8 28445..28522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.2.1prot_P-littoralis_Contig8.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 26936..28522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.2.1

>prot_P-littoralis_Contig8.2.1 ID=prot_P-littoralis_Contig8.2.1|Name=mRNA_P-littoralis_Contig8.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=273bp
KSWPFSKEENIAILKIISDKLGAQIHSKEFAFSRQHGFNTWHNRVGVPVM
QLLKKNPAYMADHGHDYKERFAPSEMRHLRNWWKEQKKADGKLRQKAGTG
GSGGKPLEKLSHFQTLRRDCFQSNDACNRRDLMKETFNLSAAGGSASAGA
RSSAASGTVDLTGAGAGGRADVDTRGGAGKRKKPTKGKSKKASKSPGEGD
GSGGRGRDKVAASGGGKGKGKKTRGGKGKARRAGTMSLKTTTTLPKDPAT
IGAQPTRKRRAHTFAARGGGEAG
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mRNA from alignment at P-littoralis_Contig8:26936..28522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.2.1 ID=mRNA_P-littoralis_Contig8.2.1|Name=mRNA_P-littoralis_Contig8.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1587bp|location=Sequence derived from alignment at P-littoralis_Contig8:26936..28522- (Pylaiella littoralis U1_48)
AAATCTTGGCCCTTCAGCAAGGAGGAAAATATCGCCATCCTCAAGATTAT
TTCGGACAAGTTGGGAGCACAAATTCATGTGAGTCGTGCCCTTCGGTTGT
TCTTATGAGGTTGTTGTGCGATTGTTGTAGGGCTTGGCGCGATGTAGGTT
ATTACTGTCGGGATATGTCAACAGCAATGTGCCTCTTTGTTGCGCTGGTG
TAGGGTTACCGATAAGTAAGTGAAATGCCCATGTTTCAAAAGCGCCCCCC
CCCCCCCCCCTGATTGTGTATCTGAGTATCACTGTGGCGAGCACCACCGG
GCCTCTTGTTCGTGCTTTGTACTTACCAATCATCCTCAGAACCCTTGTGC
AGTTCGTCGACTTGCGATTGGTGCTCAACGTGCCCTGGTTCGTGGTAAAT
CATACTTCGAAGTATAATGTTACGTCGAGTGCGACCTCGGAACATTGGAA
GGGTTAATGTTTCCCTTCCACGACGGTCGTTGAGTGTGGTCTGTTTCCAA
CACTCGTTTAAATTAAGAAATGTAGGACCTCAAAAAATCTTTCCATGAAG
GATAACGTCGTGTCGACACGGCATTTCGCCCGACGACTTAGTTGTGGGCG
TCTCCCCTTGCATGTAGACGGTTCGGTTACTTTCCATCCCGATCCGTTGA
GCACTCCTTCAACAAGATCCAGCATTCACATTACACGAGGTCCTATCACG
CACCCCAAACAACAAACAACCACAATGCGCACGTGACAGATAGCACTGTC
ACCCCTTTGTATCCCACTCGGAACCATATTTACTCATGTGCCCTCGCTGG
TCGACACATACCCCCCCCCCCGCTTGCCAACATGTGATCTTCGCAGAGCA
AGGAGTTCGCGTTCTCCAGGCAGCACGGGTTCAACACTTGGCACAACCGT
GTCGGAGTCCCCGTCATGCAGCTGTTGAAGAAGAACCCCGCCTACATGGC
TGACCATGGGCATGACTACAAAGAGCGGTTTGCGCCGTCGGAAATGCGTC
ATCTTCGAAACTGGTGGAAAGAGCAGAAGAAGGCCGACGGGAAACTCCGC
CAGAAGGCTGGGACAGGTGGCAGCGGGGGTAAACCGCTGGAGAAGCTGAG
TCACTTCCAGACCCTCCGGAGAGACTGCTTTCAAAGCAACGACGCCTGTA
ATCGGCGAGATCTGATGAAAGAGACTTTCAACTTAAGTGCAGCAGGGGGC
TCGGCGAGCGCCGGCGCACGTTCCTCCGCTGCCTCGGGAACCGTCGACTT
GACCGGTGCGGGTGCCGGGGGTCGCGCCGATGTGGACACCCGTGGAGGGG
CCGGGAAGCGCAAAAAGCCGACGAAGGGGAAAAGCAAGAAGGCGTCGAAG
TCTCCAGGCGAGGGCGACGGCAGTGGCGGCAGAGGGAGGGATAAAGTCGC
GGCCTCTGGCGGGGGGAAGGGTAAAGGCAAAAAAACGCGAGGAGGGAAGG
GGAAGGCCCGGAGAGCGGGGACGATGAGCCTGAAAACGACGACGACCCTA
CCCAAGGACCCGGCGACAATTGGTGCCCAACCGACTCGGAAGAGGAGAGC
ACACACGTTTGCAGCCCGGGGGGGGGGGGAGGCGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:26936..28522-

>mRNA_P-littoralis_Contig8.2.1 ID=mRNA_P-littoralis_Contig8.2.1|Name=mRNA_P-littoralis_Contig8.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=819bp|location=Sequence derived from alignment at P-littoralis_Contig8:26936..28522- (Pylaiella littoralis U1_48)
AAATCTTGGCCCTTCAGCAAGGAGGAAAATATCGCCATCCTCAAGATTAT
TTCGGACAAGTTGGGAGCACAAATTCATAGCAAGGAGTTCGCGTTCTCCA
GGCAGCACGGGTTCAACACTTGGCACAACCGTGTCGGAGTCCCCGTCATG
CAGCTGTTGAAGAAGAACCCCGCCTACATGGCTGACCATGGGCATGACTA
CAAAGAGCGGTTTGCGCCGTCGGAAATGCGTCATCTTCGAAACTGGTGGA
AAGAGCAGAAGAAGGCCGACGGGAAACTCCGCCAGAAGGCTGGGACAGGT
GGCAGCGGGGGTAAACCGCTGGAGAAGCTGAGTCACTTCCAGACCCTCCG
GAGAGACTGCTTTCAAAGCAACGACGCCTGTAATCGGCGAGATCTGATGA
AAGAGACTTTCAACTTAAGTGCAGCAGGGGGCTCGGCGAGCGCCGGCGCA
CGTTCCTCCGCTGCCTCGGGAACCGTCGACTTGACCGGTGCGGGTGCCGG
GGGTCGCGCCGATGTGGACACCCGTGGAGGGGCCGGGAAGCGCAAAAAGC
CGACGAAGGGGAAAAGCAAGAAGGCGTCGAAGTCTCCAGGCGAGGGCGAC
GGCAGTGGCGGCAGAGGGAGGGATAAAGTCGCGGCCTCTGGCGGGGGGAA
GGGTAAAGGCAAAAAAACGCGAGGAGGGAAGGGGAAGGCCCGGAGAGCGG
GGACGATGAGCCTGAAAACGACGACGACCCTACCCAAGGACCCGGCGACA
ATTGGTGCCCAACCGACTCGGAAGAGGAGAGCACACACGTTTGCAGCCCG
GGGGGGGGGGGAGGCGGGT
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