mRNA_P-littoralis_Contig8.131.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.131.1
Unique NamemRNA_P-littoralis_Contig8.131.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:569362..570394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1033
Hectar predicted targeting categorysignal anchor
Exons1
Cds size579
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791631.151295-UTR-P-littoralis_Contig8:569361..5697971680791631.151295-UTR-P-littoralis_Contig8:569361..569797Pylaiella littoralis U1_48UTRP-littoralis_Contig8 569362..569797 -
1680791631.1746156-UTR-P-littoralis_Contig8:570376..5703941680791631.1746156-UTR-P-littoralis_Contig8:570376..570394Pylaiella littoralis U1_48UTRP-littoralis_Contig8 570377..570394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791631.1627228-CDS-P-littoralis_Contig8:569797..5703761680791631.1627228-CDS-P-littoralis_Contig8:569797..570376Pylaiella littoralis U1_48CDSP-littoralis_Contig8 569798..570376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.131.1prot_P-littoralis_Contig8.131.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 569798..570376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.131.1

>prot_P-littoralis_Contig8.131.1 ID=prot_P-littoralis_Contig8.131.1|Name=mRNA_P-littoralis_Contig8.131.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=193bp
MLRISFLPRSVVVGNDRWYICYFCAVLGLGFGCSRSFASILFVDPLSRFF
FGGAVLAVFSVVAIDWVNLLFRDGVILSTARWLLPLVEEKHVLRFIESCS
AGVSPGLLISLLPSPVAPAGFSLVCSSRTEGIQANWTCQATCLRQCCIFF
RPFSRGFVLMLRAPCCRLRYFGRWRHGPLPVQYTQSCPCFTW*
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mRNA from alignment at P-littoralis_Contig8:569362..570394-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.131.1 ID=mRNA_P-littoralis_Contig8.131.1|Name=mRNA_P-littoralis_Contig8.131.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1033bp|location=Sequence derived from alignment at P-littoralis_Contig8:569362..570394- (Pylaiella littoralis U1_48)
AAGTGAAATGATGGTCCGATGTTGCGCATTTCATTTCTGCCTCGGTCTGT
TGTGGTAGGGAACGACAGATGGTACATTTGTTACTTTTGCGCGGTTTTAG
GTTTGGGCTTTGGATGCTCTCGATCGTTTGCGTCAATTCTTTTCGTCGAT
CCTCTGTCTCGGTTTTTCTTTGGTGGCGCTGTGCTCGCTGTTTTCTCTGT
TGTTGCGATTGATTGGGTGAATCTTCTGTTTCGCGATGGTGTGATTCTGT
CGACAGCACGATGGCTTCTCCCGCTTGTGGAAGAGAAGCACGTTTTGCGA
TTCATTGAATCCTGTAGTGCCGGTGTGTCACCGGGCTTGCTGATCTCTCT
GTTGCCATCGCCGGTCGCACCGGCGGGCTTTTCTCTCGTCTGCAGTTCGC
GAACGGAGGGAATTCAAGCAAATTGGACATGTCAAGCAACTTGTCTACGC
CAATGTTGTATCTTTTTTAGGCCATTCTCGAGAGGTTTTGTTCTCATGCT
CCGAGCTCCCTGTTGCCGATTGAGGTATTTTGGGAGGTGGCGGCATGGAC
CGTTACCTGTACAGTATACGCAGTCATGCCCATGCTTTACGTGGTAGATG
CGACAAGGACCGTTTATTTGTCATGGGACTGGTGTGAAGAAACTGCTCAC
CCACCCATCCCGGCTGTGAGCCAGTCTACACGGCAAGATGTCGTTACTGT
TGCTGTAGATGAACGCACGTATGGAGTTTTAACGGTGAAGTCCATGTACC
TGCTGGTGGCCTGCTCAGTAACTTCGTTTAGAGTAGAGAAGAAAGGACGT
CTTGGAAGAAAACGCATGGTGTGTAACTCGTTGCCAGTACCGTACGTGAG
TTTAGCTGGCTGAGGGGGGCACTATGCTTGAAGACGACGACGCCTTTCTC
GGCCTTGACAAGAGCGGCAGAACGCACATGAGACGGTTCGGACGGTAGGA
GCACGACCACTTGCGTTTAACTGCGTTGTTGGTTGTTACACTCGTTTGGG
ACTCGTCTGATAAATGTCCAAAACTACGTTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:569362..570394-

>mRNA_P-littoralis_Contig8.131.1 ID=mRNA_P-littoralis_Contig8.131.1|Name=mRNA_P-littoralis_Contig8.131.1|organism=Pylaiella littoralis U1_48|type=CDS|length=579bp|location=Sequence derived from alignment at P-littoralis_Contig8:569362..570394- (Pylaiella littoralis U1_48)
ATGTTGCGCATTTCATTTCTGCCTCGGTCTGTTGTGGTAGGGAACGACAG
ATGGTACATTTGTTACTTTTGCGCGGTTTTAGGTTTGGGCTTTGGATGCT
CTCGATCGTTTGCGTCAATTCTTTTCGTCGATCCTCTGTCTCGGTTTTTC
TTTGGTGGCGCTGTGCTCGCTGTTTTCTCTGTTGTTGCGATTGATTGGGT
GAATCTTCTGTTTCGCGATGGTGTGATTCTGTCGACAGCACGATGGCTTC
TCCCGCTTGTGGAAGAGAAGCACGTTTTGCGATTCATTGAATCCTGTAGT
GCCGGTGTGTCACCGGGCTTGCTGATCTCTCTGTTGCCATCGCCGGTCGC
ACCGGCGGGCTTTTCTCTCGTCTGCAGTTCGCGAACGGAGGGAATTCAAG
CAAATTGGACATGTCAAGCAACTTGTCTACGCCAATGTTGTATCTTTTTT
AGGCCATTCTCGAGAGGTTTTGTTCTCATGCTCCGAGCTCCCTGTTGCCG
ATTGAGGTATTTTGGGAGGTGGCGGCATGGACCGTTACCTGTACAGTATA
CGCAGTCATGCCCATGCTTTACGTGGTAG
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