mRNA_P-littoralis_Contig8.289.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.289.1
Unique NamemRNA_P-littoralis_Contig8.289.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:1207902..1208675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size761
Hectar predicted targeting categoryother localisation
Exons2
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791631.0410683-UTR-P-littoralis_Contig8:1207901..12080381680791631.0410683-UTR-P-littoralis_Contig8:1207901..1208038Pylaiella littoralis U1_48UTRP-littoralis_Contig8 1207902..1208038 -
1680791631.078121-UTR-P-littoralis_Contig8:1208447..12086751680791631.078121-UTR-P-littoralis_Contig8:1208447..1208675Pylaiella littoralis U1_48UTRP-littoralis_Contig8 1208448..1208675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791631.0508597-CDS-P-littoralis_Contig8:1208038..12082561680791631.0508597-CDS-P-littoralis_Contig8:1208038..1208256Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1208039..1208256 -
1680791631.0663128-CDS-P-littoralis_Contig8:1208269..12084471680791631.0663128-CDS-P-littoralis_Contig8:1208269..1208447Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1208270..1208447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.289.1prot_P-littoralis_Contig8.289.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 1208039..1208447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.289.1

>prot_P-littoralis_Contig8.289.1 ID=prot_P-littoralis_Contig8.289.1|Name=mRNA_P-littoralis_Contig8.289.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MRSETTGNSWAPFCIMRILQRLQTNTAGPSENQVTPTTIKSHTCFPQCVC
QRYRIIRRTLSNEKLHPCKHTCFEYVNAQMYHSKLCTCTCSDVLCGRHPN
TQLKVTALIFFRTTVHWTTECTTRRTFVFEH*
back to top

mRNA from alignment at P-littoralis_Contig8:1207902..1208675-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.289.1 ID=mRNA_P-littoralis_Contig8.289.1|Name=mRNA_P-littoralis_Contig8.289.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=774bp|location=Sequence derived from alignment at P-littoralis_Contig8:1207902..1208675- (Pylaiella littoralis U1_48)
CTCGTTTTTCCAGGCCGGTGGTGGCTACCGTAGTGCCTGCCGCCACCATC
ATTTTCTTCGGAGCAAAGTTTCTCTTTCTTTCCGTGCAGTCAGGCAGCAC
GCAAATAACGGCACATCAGTCATCACAGCAACAAGATCCCGACTCCTATG
CAGTAGTAAACGGAACGCAAAAAATCATCCGAAGTTGATGAAAACAAAAA
TAACCAACATAAAAAAAAGAAGAAACTGATGCGGAGTGAGACAACAGGCA
ACTCGTGGGCACCCTTTTGTATCATGAGGATTTTGCAGCGTCTTCAAACA
AACACCGCTGGTCCCTCCGAAAATCAAGTAACGCCAACAACCATCAAAAG
CCACACTTGTTTTCCTCAATGTGTATGCCAGAGGTATCGTATCATACGCC
GTACCTGTAGACGGATGAGTGTCAAATGAAAAACTGCACCCATGTAAACA
TACATGCTTTGAGTATGTAAATGCACAAATGTATCATTCGAAACTATGTA
CTTGTACATGTTCCGACGTTCTGTGCGGTCGACACCCAAACACTCAACTA
AAAGTAACAGCTTTAATTTTTTTCCGGACAACAGTACATTGGACAACAGA
GTGCACTACTCGTCGCACTTTCGTATTTGAACACTAAGAATTGTTTGTAG
CACATTAAATATCAGACTGGACAGCCGTGAAGCAGAGGAATGAGGTTGAT
TCCACGAAAATCTTCTCGCTTTGACGACGCAGACACCTTCAAGTGACGTC
GGTACAGCAGTACATCGAAAGTTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig8:1207902..1208675-

>mRNA_P-littoralis_Contig8.289.1 ID=mRNA_P-littoralis_Contig8.289.1|Name=mRNA_P-littoralis_Contig8.289.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig8:1207902..1208675- (Pylaiella littoralis U1_48)
ATGCGGAGTGAGACAACAGGCAACTCGTGGGCACCCTTTTGTATCATGAG
GATTTTGCAGCGTCTTCAAACAAACACCGCTGGTCCCTCCGAAAATCAAG
TAACGCCAACAACCATCAAAAGCCACACTTGTTTTCCTCAATGTGTATGC
CAGAGGTATCGTATCATACGCCGTACCTTGTCAAATGAAAAACTGCACCC
ATGTAAACATACATGCTTTGAGTATGTAAATGCACAAATGTATCATTCGA
AACTATGTACTTGTACATGTTCCGACGTTCTGTGCGGTCGACACCCAAAC
ACTCAACTAAAAGTAACAGCTTTAATTTTTTTCCGGACAACAGTACATTG
GACAACAGAGTGCACTACTCGTCGCACTTTCGTATTTGAACACTAA
back to top