mRNA_P-littoralis_Contig8.228.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.228.1
Unique NamemRNA_P-littoralis_Contig8.228.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:969956..972587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size412
Hectar predicted targeting categoryother localisation
Exons4
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791630.9725633-CDS-P-littoralis_Contig8:969956..9700421680791630.9725633-CDS-P-littoralis_Contig8:969956..970042Pylaiella littoralis U1_48CDSP-littoralis_Contig8 969957..970042 -
1680791630.9873319-CDS-P-littoralis_Contig8:970784..9708781680791630.9873319-CDS-P-littoralis_Contig8:970784..970878Pylaiella littoralis U1_48CDSP-littoralis_Contig8 970785..970878 -
1680791631.0014153-CDS-P-littoralis_Contig8:971371..9714791680791631.0014153-CDS-P-littoralis_Contig8:971371..971479Pylaiella littoralis U1_48CDSP-littoralis_Contig8 971372..971479 -
1680791631.0127914-CDS-P-littoralis_Contig8:972464..9725871680791631.0127914-CDS-P-littoralis_Contig8:972464..972587Pylaiella littoralis U1_48CDSP-littoralis_Contig8 972465..972587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.228.1prot_P-littoralis_Contig8.228.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 969957..972587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.228.1

>prot_P-littoralis_Contig8.228.1 ID=prot_P-littoralis_Contig8.228.1|Name=mRNA_P-littoralis_Contig8.228.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
TSQHTLTRQPKHRRICNLEGPRISSQGRFYWKDARAFPPDKISAMDLRDA
MGVGDDTVGGVQDAPLSPVRRGPIFTKETIGGDDANSMDTDEDDRVHPDP
DADRFTPQDTTPSQRPTSDERWGFCSRVRWAIRTNRL
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mRNA from alignment at P-littoralis_Contig8:969956..972587-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.228.1 ID=mRNA_P-littoralis_Contig8.228.1|Name=mRNA_P-littoralis_Contig8.228.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2632bp|location=Sequence derived from alignment at P-littoralis_Contig8:969956..972587- (Pylaiella littoralis U1_48)
ACCTCTCAACATACCCTTACTCGCCAACCCAAGCACCGCCGAATCTGCAA
CTTGGAGGGACCTCGGATCTCATCACAAGGAAGATTTTATTGGAAGGACG
CGCGGGCATTCCCCCCCGACAAGGTGAGATCCGCGGAAATTCATGCGCCC
CCGAAAGGCGGGGCTGCTTCGCGCCAATTCTCGAGTACCCTCCACGCCAC
CCGTGAGGCCTTCGGGTTAGTTGATGATTAGCCCTACCACACTCAAGATG
CTCATAGACCATATCTCAGAGAGCTTCCCATGCCAAGCCGTTTGTAAATC
CAACCCGTGTGGACCGAGAGCCAAGTGTAGTTCGGAATCTGAAAATTCAG
ATTATTGGGTGACAGCGGGGCAGCGGGGCAAACGCCCGGACCTCCATTTT
TTACACGCGTGTGCAGCCAACAACAAAGTTGCTACCGGCGGCACGATCAT
ACGTGCCGCACATCGCGCATTGCTGTTGTCAGCAGTCGGCGAGTACAACG
CCTGATCCTGCCCATAGTTTTTGGTAGTTGTTCCAAAAATCGAGGCGTAG
GAGTGGGTGACAAAACCATTCTGTACCCAGCACCAAACCATTCCTGCACA
GCAGCCAGGGTGAACGCCTTGCGTGCGCACCATCCAGGCGCTCATTCCAA
CCAGACCGCCCTAGCCAGGGCATACGTGGCCGTGCAATAGCCCGACGTTT
TTCGTGCGTGTTTGGTTAGGAGTAAGGGTTTAGGCAGATGATTAATCCGC
TTGTTTTTTTTCCAGCGTCGATGCTGGTCGTACACTCACGAGCAATGATG
TGGCGGTATGTAGGTGTCCCTGCTGAGCTGCTGTAGTTATGGGCCAAGAA
GCACGCCCATCTACTACTGATGCATCCGTTGTTTTTGTAAGCGTGTGTGC
ATAAATTATGGTTACATTGTGATGCTTTATCCTGTTCCGTATTTTCGCAA
GATAGTAAGATGTGCCCATCATGCCACAGTAGCAGCGCCGGGGGTAGGGC
TCGTAGCCCTCTTTTTTGGTTATGTGATTTCGTGGCTATCTGTGTACAGG
TCCTGTTAAATCCTGCCGTCTTGTGATAACCTGTTTTCGCTGCCATGTTG
CTTAGCAGATTTCGGCCATGGACCTACGGGATGCTATGGGAGTCGGAGAT
GATACGGTTGGAGGTGTGCAGGATGCTCCACTTTCGCCAGTCAGAAGAGG
ACCTATTTTCACAAAGGCAAGTCCATGGCGCCTTGTCGTCATTCACGCTA
GCGTGCCTACCGCGGTGAGCTTTCCTATAGATTTGTCGCCGGCATTCTGT
GGTTTGAACGGTGAACGGAATTATGGACCTAAATACGATACATAGGCACA
GATAGCCCACATGCCGAGATGGAAAGTCAAAGTGTTTGGAGAAACCGCAG
AAAGGGGGTGTTGTAGTGAGTGCCATAAGGAGCGCGAGAACTGGACAGCA
GTACAGGCAGCAGTAGGGGCATCAGCACAGGCGTCGTACAGGAGTAGCAG
GCTTCGTATGTATAAAGGACTCCGGTGTCCCAGATTTATCGTGGGTTGAT
ATACTAGCACTGCTGTTAGTTGCGTAAGGGTTGGGTTTTCCGCATATATA
TCCAACATGCCGTAGAGTATCCTAGCTTTGTTGGCCTTGCGCATGTGGTT
CGGCAAGGTTCTACGGTTCCTAACTTCTTATTCTCCGTATTTCGTTATAC
TTCATACAGGAGACGATTGGCGGTGACGACGCTAATAGCATGGACACCGA
CGAAGACGATCGGGTACATCCCGATCCCGACGCTGACAGGTTTACGCCGC
AAGGTACGACAAAACACAGAACAATTGCCGACCGCGCCTGTTGTGCGTCA
CTTTACCATCAGCGGGCTCGTTGTAGGTGAAAACTGTGTGGTTCCTTTTG
CGTGGACTTGGCATGCCCAAATCTATTTTCTGGTGCCCTGAAACATGTTG
GGTCCCCGGCGGACACTTCTTGTCGAAGATCGCCTGCGTCTCGGGGTCGG
AGAGGAAGGTGTGGAGAGCTTCTTCCTGCTTGTCGCTGATCCGCACGAAC
TCCCTCCTCGCAGCTTTAAGTCGCTCCACCGCGCGGATCTTCGCTTCTCG
CTCCTTCTTGATCTTTTGACCGTTGATGTAGATGGTGCGATCCTGCCATT
GAGGGGATACGTAAAGCAGGCCGGTCAGTGACAGGCCCCAATAAAGGCAA
CGGGTGCACGGCATCTTCTTGAGAGCAATAACTATCACAACCCTAAGTGT
TGTCCCCAACGCTCCACGCCACACAGCAGTCAGTCGGCGCCACTAAACTT
TTGCGCGGTGCCCATGTAGCCGACGTTCGTGCCGACTGACACGTCCTTCG
TCGATACATTGTGGGCCCGCTTCGAGACTCCCTTGCGGTAGAACTTCTTG
CACGCAGCACACCTTGGTACCGACCCAACACCATGGCCTTGGCCAGCCAA
TCGAGTGCAGCCTTTGTGCCATAGTACGTCAACGTCTCCCACCCGACCCA
ACACGCCCAAAACACCCCGACTCCCTGCGATACACCCCGAAATAGACACC
ACACCATCCCAGCGACCGACATCGGACGAGAGGTGGGGCTTCTGCTCGAG
AGTGCGCTGGGCCATACGCACTAATCGGCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:969956..972587-

>mRNA_P-littoralis_Contig8.228.1 ID=mRNA_P-littoralis_Contig8.228.1|Name=mRNA_P-littoralis_Contig8.228.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig8:969956..972587- (Pylaiella littoralis U1_48)
ACCTCTCAACATACCCTTACTCGCCAACCCAAGCACCGCCGAATCTGCAA
CTTGGAGGGACCTCGGATCTCATCACAAGGAAGATTTTATTGGAAGGACG
CGCGGGCATTCCCCCCCGACAAGATTTCGGCCATGGACCTACGGGATGCT
ATGGGAGTCGGAGATGATACGGTTGGAGGTGTGCAGGATGCTCCACTTTC
GCCAGTCAGAAGAGGACCTATTTTCACAAAGGAGACGATTGGCGGTGACG
ACGCTAATAGCATGGACACCGACGAAGACGATCGGGTACATCCCGATCCC
GACGCTGACAGGTTTACGCCGCAAGACACCACACCATCCCAGCGACCGAC
ATCGGACGAGAGGTGGGGCTTCTGCTCGAGAGTGCGCTGGGCCATACGCA
CTAATCGGCTA
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