mRNA_P-littoralis_Contig8.227.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.227.1
Unique NamemRNA_P-littoralis_Contig8.227.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:970209..970867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size505
Hectar predicted targeting categoryother localisation
Exons2
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791630.9103737-CDS-P-littoralis_Contig8:970208..9702891680791630.9103737-CDS-P-littoralis_Contig8:970208..970289Pylaiella littoralis U1_48CDSP-littoralis_Contig8 970209..970289 +
1680791630.9239547-CDS-P-littoralis_Contig8:970445..9707961680791630.9239547-CDS-P-littoralis_Contig8:970445..970796Pylaiella littoralis U1_48CDSP-littoralis_Contig8 970446..970796 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791630.9375713-UTR-P-littoralis_Contig8:970796..9708671680791630.9375713-UTR-P-littoralis_Contig8:970796..970867Pylaiella littoralis U1_48UTRP-littoralis_Contig8 970797..970867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.227.1prot_P-littoralis_Contig8.227.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 970209..970796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.227.1

>prot_P-littoralis_Contig8.227.1 ID=prot_P-littoralis_Contig8.227.1|Name=mRNA_P-littoralis_Contig8.227.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
SLEAGPQCIDEGRVSRHERRLHGHRAKDRTIYINGQKIKKEREAKIRAVE
RLKAARREFVRISDKQEEALHTFLSDPETQAIFDKKCPPGTQHVSGHQKI
DLGMPSPRKRNHTVFTYNEPADGKVTHNRRGRQLFCVLSYLAA*
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mRNA from alignment at P-littoralis_Contig8:970209..970867+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.227.1 ID=mRNA_P-littoralis_Contig8.227.1|Name=mRNA_P-littoralis_Contig8.227.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=659bp|location=Sequence derived from alignment at P-littoralis_Contig8:970209..970867+ (Pylaiella littoralis U1_48)
AGTCTCGAAGCGGGCCCACAATGTATCGACGAAGGACGTGTCAGTCGGCA
CGAACGTCGGCTACATGGGCACCGCGCAAAAGTTTAGTGGCGCCGACTGA
CTGCTGTGTGGCGTGGAGCGTTGGGGACAACACTTAGGGTTGTGATAGTT
ATTGCTCTCAAGAAGATGCCGTGCACCCGTTGCCTTTATTGGGGCCTGTC
ACTGACCGGCCTGCTTTACGTATCCCCTCAATGGCAGGATCGCACCATCT
ACATCAACGGTCAAAAGATCAAGAAGGAGCGAGAAGCGAAGATCCGCGCG
GTGGAGCGACTTAAAGCTGCGAGGAGGGAGTTCGTGCGGATCAGCGACAA
GCAGGAAGAAGCTCTCCACACCTTCCTCTCCGACCCCGAGACGCAGGCGA
TCTTCGACAAGAAGTGTCCGCCGGGGACCCAACATGTTTCAGGGCACCAG
AAAATAGATTTGGGCATGCCAAGTCCACGCAAAAGGAACCACACAGTTTT
CACCTACAACGAGCCCGCTGATGGTAAAGTGACGCACAACAGGCGCGGTC
GGCAATTGTTCTGTGTTTTGTCGTACCTTGCGGCGTAAACCTGTCAGCGT
CGGGATCGGGATGTACCCGATCGTCTTCGTCGGTGTCCATGCTATTAGCG
TCGTCACCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:970209..970867+

>mRNA_P-littoralis_Contig8.227.1 ID=mRNA_P-littoralis_Contig8.227.1|Name=mRNA_P-littoralis_Contig8.227.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig8:970209..970867+ (Pylaiella littoralis U1_48)
AGTCTCGAAGCGGGCCCACAATGTATCGACGAAGGACGTGTCAGTCGGCA
CGAACGTCGGCTACATGGGCACCGCGCAAAAGATCGCACCATCTACATCA
ACGGTCAAAAGATCAAGAAGGAGCGAGAAGCGAAGATCCGCGCGGTGGAG
CGACTTAAAGCTGCGAGGAGGGAGTTCGTGCGGATCAGCGACAAGCAGGA
AGAAGCTCTCCACACCTTCCTCTCCGACCCCGAGACGCAGGCGATCTTCG
ACAAGAAGTGTCCGCCGGGGACCCAACATGTTTCAGGGCACCAGAAAATA
GATTTGGGCATGCCAAGTCCACGCAAAAGGAACCACACAGTTTTCACCTA
CAACGAGCCCGCTGATGGTAAAGTGACGCACAACAGGCGCGGTCGGCAAT
TGTTCTGTGTTTTGTCGTACCTTGCGGCGTAA
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