mRNA_P-littoralis_Contig8.221.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.221.1
Unique NamemRNA_P-littoralis_Contig8.221.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:966644..968260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size310
Hectar predicted targeting categoryother localisation
Exons3
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791630.7998967-CDS-P-littoralis_Contig8:966643..9667201680791630.7998967-CDS-P-littoralis_Contig8:966643..966720Pylaiella littoralis U1_48CDSP-littoralis_Contig8 966644..966720 +
1680791630.8117025-CDS-P-littoralis_Contig8:967642..9677291680791630.8117025-CDS-P-littoralis_Contig8:967642..967729Pylaiella littoralis U1_48CDSP-littoralis_Contig8 967643..967729 +
1680791630.822877-CDS-P-littoralis_Contig8:968115..9682601680791630.822877-CDS-P-littoralis_Contig8:968115..968260Pylaiella littoralis U1_48CDSP-littoralis_Contig8 968116..968260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.221.1prot_P-littoralis_Contig8.221.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 966644..968260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.221.1

>prot_P-littoralis_Contig8.221.1 ID=prot_P-littoralis_Contig8.221.1|Name=mRNA_P-littoralis_Contig8.221.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
ATWRDLGSHHKEDFIGRTRGHSPPTRGAHAICGRSPDGAGGVGEVPRRGL
RFCLGPLPAGRDNGQCRDPGEGWCPSASSTHASGAYSTHADRQRQTARSE
QDP
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mRNA from alignment at P-littoralis_Contig8:966644..968260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.221.1 ID=mRNA_P-littoralis_Contig8.221.1|Name=mRNA_P-littoralis_Contig8.221.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1617bp|location=Sequence derived from alignment at P-littoralis_Contig8:966644..968260+ (Pylaiella littoralis U1_48)
GCAACTTGGAGGGACCTCGGATCTCATCACAAGGAAGACTTTATTGGAAG
GACGCGCGGGCATTCCCCGCCGACAAGGTGAGATCCGCGGAAATTCATGC
GCCCTCGAAAGGCGGGGCTGCTTCGCTCCAATTCTCGAGTACCCTCCACG
CCACCCGTGAGGCCTTCGGGTTAGTTGCTGATTAGCCCTACCACACTCAA
CATGCTCATAGACCATATCTCAGAGAGCTTCCCATGCCAAGCCGTTTGTA
AATCCAACCCGTGTGGACCGAGAGCCAAGTGTAGTTCGGAATCTGAAAAT
TCAGATTATGGGGTGACAGCAGGGCAACGCCTGGGACCCTCAGTTTCTCG
TGCGTTTTGTATTTGAGTTAGAACGTGCTGTTCCCAGCTCCTGCGTTTGA
AAAAAGGTTGAACGCGAGCCGCCCTTCCTCCCACAGCAGTCCTGTCCTGC
GGTCACCAAAATTGTGAATGCCGTACGTAGCTTGTTCAGACCTCTGCCTA
CACCTAGTCCTTCCTCCTATCCGCTTGAGAGGGCACGACGCTAGTTCTAG
TCTACCAAGTACACTGCTTCTACGGGGCGGGTGGACCATCCGGGCTCTCC
AGCCCACTCCTTTTCATGTCTCCGTGGCCGTGCAAAATCCCAGCCCTGTG
GTTGTGGTTCACGTGCGCGTGCGTCTGATGGATTAAGTCTTGTTTAGCAT
TCACCCGTGCTGCTACAATTTGCTGTTTTGGCGATTATGACACCTTCCTG
AGTACTTATTTGGGTGCCTCTCCCACACAACGCCTGGTACCCTATCCGCA
CGCACTGCTAGACTTTTGACTGCCGGAGGAAATGTATTTATGTGTTGGTG
TTCTACAAGTGAGACAAATGTTTTCTTTACTAATTTACTACATATGTAGA
AAATGGTGTCTGTTGCTGTACAGACTATTAATTTTTGGGTTTTGGGAAAC
AATAATAGGCATGTACACTGCACCTCTTGCTTCTTGCTTTCCTCCATAGG
GGGGCCCACGCTATCTGTGGGCGGAGCCCAGATGGGGCAGGCGGCGTTGG
CGAGGTGCCTCGTCGTGGTCTTCGCTTTTGTCTCGGGTGGGCTGTGCGCG
TGCACACAACGCTTGTTTGCATCCCTGTGTAGTGTTTTGTCGATAGATTC
GCGTTGCTGCAGAGTGCTTTGTTTTGGGCTGTTCGTCTCGGCGTTATTGT
AGATGCTCAAAATCTACAAAAATAAAACTCGAGTACGTCTCGGGTACGGA
TACACTCGGCTCTAATTGTTACTAGTGACGGTAAAACTTGTCAGGGTGTC
TTGCTTCCCACGGCGCAGGGCCCTTCGACGGTGTATGTGCGCGCCCATTA
ATAATGAAGTTTTACAAGGTCTAATGGCATCCCGGTATTTTCTCGAAATA
TGACCTGACTTGCCATGGCTTCTTGGTGTTGTGCAATGCCCTCTTCATTC
CGTTTACCGCTGGCTTCTGTAGCCCCCTTCCTGCAGGTCGCGACAATGGA
CAGTGCCGTGACCCCGGAGAGGGGTGGTGCCCCTCCGCTTCCAGTACCCA
CGCCTCCGGTGCATACAGCACCCACGCCGACCGACAGCGCCAGACGGCTA
GAAGCGAGCAGGATCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:966644..968260+

>mRNA_P-littoralis_Contig8.221.1 ID=mRNA_P-littoralis_Contig8.221.1|Name=mRNA_P-littoralis_Contig8.221.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig8:966644..968260+ (Pylaiella littoralis U1_48)
GCAACTTGGAGGGACCTCGGATCTCATCACAAGGAAGACTTTATTGGAAG
GACGCGCGGGCATTCCCCGCCGACAAGGGGGGCCCACGCTATCTGTGGGC
GGAGCCCAGATGGGGCAGGCGGCGTTGGCGAGGTGCCTCGTCGTGGTCTT
CGCTTTTGTCTCGGCCCCCTTCCTGCAGGTCGCGACAATGGACAGTGCCG
TGACCCCGGAGAGGGGTGGTGCCCCTCCGCTTCCAGTACCCACGCCTCCG
GTGCATACAGCACCCACGCCGACCGACAGCGCCAGACGGCTAGAAGCGAG
CAGGATCCA
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