mRNA_P-littoralis_Contig8.48.8 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.48.8
Unique NamemRNA_P-littoralis_Contig8.48.8
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig8.48.8 vs. uniprot
Match: D8LB54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB54_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 9.360e-94
Identity = 188/318 (59.12%), Postives = 207/318 (65.09%), Query Frame = 3 
Query:   87 AMGYSTQDTFYVDPRVEGCDGLSSRAKRLGLKMKDFLSEGVTVCVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRRLSRIHRM-----QXXXXQCRNREHSSITKQARQLRATVLSGQAFGSWLDRQESKRATARTGAXXXXXXXXXXXXXXXXXXXXXXXAAARPLILPR----QQQAGTSRFKSQEHPRVVMKDLDGLEPDRVQAFPPELLRKCNLHTDAPPGICPFTPREQWHREVLRVKKKDT-AGAAKVAARMLPSGAQKIRRGGWCECCERQYIGTMSEHCAGDPHRAAVARDPNYAVLLALESWTGAQ 1010
            A+G STQDTFYVDPRVEGCD LSSRA+RLG K + FL EGVT+CVAA                            RG+RLSRIHRM          +   + H+SI  QARQLRA V++GQ F  WL RQESKR   +                          AA RPLI  R    Q+ AG SRFKS+EHPRVV+KDLDGLEPDRVQAFPPELLRKC L TDAPPGICPFTPREQW REVL+VKKKD     AKVAARM P+G+QK RRGGWCECCE QYIGTMSEHCA D H AAV  DPN+A LLA ESWTGA+
Sbjct:    3 AIGLSTQDTFYVDPRVEGCDSLSSRAQRLGFKTRGFLGEGVTICVAASTTPSAGDGGASEGAATPGAAGGVGQS-RGQRLSRIHRMVTQAQTESSARPGQQAHTSIVDQARQLRAAVVTGQTFRLWLGRQESKRGAGK------GEGGRVTVAAGAAVAGEGKKAADRPLISRRGGGQQRAAGASRFKSREHPRVVIKDLDGLEPDRVQAFPPELLRKCFLLTDAPPGICPFTPREQWDREVLKVKKKDAQCVGAKVAARMPPAGSQKPRRGGWCECCEIQYIGTMSEHCASDRHTAAVEADPNFAALLAFESWTGAE 313
[Close]
BLAST of mRNA_P-littoralis_Contig8.48.8 vs. uniprot
Match: A0A6H5K9H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H1_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 6.430e-86
Identity = 182/334 (54.49%), Postives = 202/334 (60.48%), Query Frame = 3 
Query:  108 DTFYVDPRVEGCDGLSSRAKRLGLKMKDFLSEGVTVCVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RGRRLSRIHRMQXXXXQCR--NREHSSITKQARQLRATVLSGQAFGSWLDRQESKRATARTGAXXXXXXXXXXXXXXXXXXXXXXXAAARPLILP----RQQQAGTSRFKSQEHPRVVMKDLDGLEPDRVQAFPPELLRKCNLHTDAPPGICPFTPREQ-------------------------WHREVLRVKKKDT-AGAAKVAARMLPSGAQKIRRGGWCECCERQYIGTMSEHCAGDPHRAAVARDPNYAVLLALESWTGAQ 1010
            +TFYVDPRVEGC  LSSRA+RLG K + FL EGVTVCVAA                             RGRRLSRIHRM       +   + H+SI  QARQLRATV++GQAF  WL RQESKR   R                           A RPL+      +Q+ AG SRFKS+EHPRVV+KDLDGLEPDRVQAFPPELLRKC LHTDAPPGICPFTPREQ                         W REVL++KKKD     AKVAARM P+G+QK RRGGWCECCE QYIGTMSEHCA D H AAV  DP++A LLA ESWTGA+
Sbjct:    4 ETFYVDPRVEGCGSLSSRAQRLGFKTRGFLGEGVTVCVAASTNPAAGDGGASEDAATATAGAVGGARQLRGRRLSRIHRMAQTEFSAQPGRQTHTSIVDQARQLRATVVTGQAFRLWLGRQESKRGAGR------GEGGRVPAAAGAAVAVEGKETADRPLMSRGGGGQQRAAGASRFKSREHPRVVIKDLDGLEPDRVQAFPPELLRKCFLHTDAPPGICPFTPREQASVRRRGAQLGSNSSNGVFVLLEEEWDREVLKMKKKDAQCVGAKVAARMPPAGSQKPRRGGWCECCEIQYIGTMSEHCASDRHTAAVEADPHFAALLAFESWTGAE 331
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.48.8 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB54_ECTSI9.360e-9459.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9H1_9PHAE6.430e-8654.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:239628..247843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size4302
Hectar predicted targeting categoryother localisation
Exons6
Cds size3471
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.48.8prot_P-littoralis_Contig8.48.8Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 240370..247754 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791630.6297774-UTR-P-littoralis_Contig8:239627..2403691680791630.6297774-UTR-P-littoralis_Contig8:239627..240369Pylaiella littoralis U1_48UTRP-littoralis_Contig8 239628..240369 -
1680791630.7219453-UTR-P-littoralis_Contig8:247754..2478431680791630.7219453-UTR-P-littoralis_Contig8:247754..247843Pylaiella littoralis U1_48UTRP-littoralis_Contig8 247755..247843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791630.6401293-CDS-P-littoralis_Contig8:240369..2430091680791630.6401293-CDS-P-littoralis_Contig8:240369..243009Pylaiella littoralis U1_48CDSP-littoralis_Contig8 240370..243009 -
1680791630.649646-CDS-P-littoralis_Contig8:243830..2439801680791630.649646-CDS-P-littoralis_Contig8:243830..243980Pylaiella littoralis U1_48CDSP-littoralis_Contig8 243831..243980 -
1680791630.6594694-CDS-P-littoralis_Contig8:244345..2444291680791630.6594694-CDS-P-littoralis_Contig8:244345..244429Pylaiella littoralis U1_48CDSP-littoralis_Contig8 244346..244429 -
1680791630.676801-CDS-P-littoralis_Contig8:245080..2454221680791630.676801-CDS-P-littoralis_Contig8:245080..245422Pylaiella littoralis U1_48CDSP-littoralis_Contig8 245081..245422 -
1680791630.689968-CDS-P-littoralis_Contig8:246241..2464781680791630.689968-CDS-P-littoralis_Contig8:246241..246478Pylaiella littoralis U1_48CDSP-littoralis_Contig8 246242..246478 -
1680791630.708864-CDS-P-littoralis_Contig8:247736..2477541680791630.708864-CDS-P-littoralis_Contig8:247736..247754Pylaiella littoralis U1_48CDSP-littoralis_Contig8 247737..247754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.48.8

>prot_P-littoralis_Contig8.48.8 ID=prot_P-littoralis_Contig8.48.8|Name=mRNA_P-littoralis_Contig8.48.8|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1157bp
MGYSTQDTFYVDPRVEGCDGLSSRAKRLGLKMKDFLSEGVTVCVAAASPS
LSSSAGDEAAATATAAAGAGADQSRGRRLSRIHRMQQQQQQCRNREHSSI
TKQARQLRATVLSGQAFGSWLDRQESKRATARTGAGTGAGAGAGAGAVRT
GTGGGKGKAAARPLILPRQQQAGTSRFKSQEHPRVVMKDLDGLEPDRVQA
FPPELLRKCNLHTDAPPGICPFTPREQWHREVLRVKKKDTAGAAKVAARM
LPSGAQKIRRGGWCECCERQYIGTMSEHCAGDPHRAAVARDPNYAVLLAL
ESWTGAQDGWGCAGSTDTEASAADGPTAGKVATEAAALSTSSAVAATSGA
GASGSNVTTTVILAPVSLAEAMTNRREEGGKVPPPPAAAVNESLQGGGGE
KKLAAPRARDSTPRRRPTSSGESVNGNEETLDSKEDSPLRGTLSPSGLRD
ATAGGRALRSSPRHRSKGKVVRCREAGAEAAGGGSGGGGAGGRRGGQRCV
STQALTTIVQPRPRSLGSGDVISDSGGCAGNLATGEASALYGRGADDAIS
CREKIPATHREDTARRVAVADAGIPAPPAGKYPHEQAITGRRNRSSPLPC
RLSRPQDVCGTPRVDEQAGRGLSDFKGAASPAAATGATATPATSALSVLS
SLTDCCSKQSSSSSERPIFVAESPARFQAHDGSSSPPSLSSLLPPPPPPP
PSSSQRVGRHPQRGGGNDRGRSSCKEETAGPPSSTAKAYTDASSSPPEAA
RRSLRERLGGVKTDSSIQAACGTLAYPPGAHRDRGKDTAGGSNDQPILSA
PGVASEENTDEIVSPSSVVSDEEIEKRREKRLKRQLALLADSPAFCGVGA
SPAGSAISSVVLGQTGTRSDDGRRSSSRVRSCVDHGKSARISCSSSGGGG
SGSRRRSRDDHRDGSYGSATKTRNGSGGTARQQSESLPSTGGSNRGGQDW
RVKNSKRKERDEDEHGPGGGGSATTEECRHVYRYPTRTAVAVATTTVIGE
RKRSDDAEYKNGGSESVLSGARRRRDRASLSPDSPREGPKPKRARRSTGT
GGSRSAGDHKDEPLSSMIGVTVSGSNSDSSGREKDSSSKNGGGVRNRTKR
QTPTPSTASRMGLETVGYSSDGGSGGGYAEDDADQTSSPPSLDRANGSEA
SHAAWV*
back to top

mRNA from alignment at P-littoralis_Contig8:239628..247843-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.48.8 ID=mRNA_P-littoralis_Contig8.48.8|Name=mRNA_P-littoralis_Contig8.48.8|organism=Pylaiella littoralis U1_48|type=mRNA|length=8216bp|location=Sequence derived from alignment at P-littoralis_Contig8:239628..247843- (Pylaiella littoralis U1_48)
TCGACAGACTGACCGTCGAAGGGAACGCTGGGCAAAGCTACGACCTCCTT
CTCAGTCTGCAGCTTTGAGGGAGCTCTTGAGCAACAGCGATGGGGTATTC
AACACAGGTGTGCAGCCGTACCGTATAGTATGCACAAGAAAATTATGCCG
CAAGACACAACTCACTTCGACCCGCTGTGTCTGCTCGTCCAACTACTGTT
GACTGATGTCTTCCAGAGACTAGGGAAGGGAGTGCCCTCGACCAGTACAC
GCCTGTTCAGGCACAGCATATACTTCGAAGTATCGAAGTATAATACGGGA
ACACGAACAGAAGGAACAGTCAGAGGGGAGGACGGGGCTGTGGCGACGTG
GTATGATCCGCCGGCATCCTAGCCTCGGGTCGACGTGCACCTCGACGACA
ATGATGCAGTTTTCAAATTGCGAAAAAGGGCCGCATTCTCCATATCATGA
TCATATCATACAAAGCAGTGCTTTGTTCCTCTTTTTTTGAATCGTCTGCC
AAACCGGAGCAGCTCCCTCTACATACAGTACCGGTATATAGCACAAAAGG
AAAGGACTTACGAAAACACGTGACACGTGAACAAAACCAACAACCAAGTG
TATCATTCAGGCGGTACAGCACACCGCACCCCACAAACCACGCCGGCGAT
ATATCCCCATGATAGCGCCACCGGTGCAAGCTGCTGAGCCGCAATGAAAT
CATATCATATCATACGCACAGAGAACCTGTCCTTGGTTTGACTACGAGTA
GTAGATTTCCAACTGCCTTCTGAGAAAGCGCAGCCGGTTTGCGGCACCTT
TCATCCGATACAGCAACATATCATCACCTTTGGTGGCAAAAAATACCACA
GTGGACCCGCTGGACCGATTTTCAAGTCTCGGTTTCCCCTCATCAGAAAT
ACCGGTAGTGTCTGTGATGGTAATGTCGGTGCCGTGCAGTAGAAGATGAT
CGATCGGCGTTGGATCCCTCATGCCAGGGGTTTAAATGTTGTCTGCGCTT
CTGCGCTGCGCAGATTATTTTGGTGGTTTGACTCATTTCTGCGGGAAGCC
GACGACGCCGTTTCTGCTGATGATTGAAAACAGGAATAGATCGTTTGTGA
TGTTGGCTCATAACCTCTTCGGTGTGGATTGATCGATTTTGTGAAATAGG
TATGGGGTTCCCGTGTGGGATCTCCATGATTTGCGACCTGCAGGCACCGC
TGTACGGACAAATGAACAACGTCTTGATCGGAAGTCAATTCCCCAACAAC
TAGCGCCCCCCACCCTTCGCAAAACGCAAAACGTTTACGGCACGGGGTCC
CGGTACATACCATACGTGTAACCGTTTCCGAAACTTGGCGATCCCTCTCT
ACGAAAACCGACCAGGATACGTTTTACGTAGATCCCAGAGTGGAAGGGTG
CGACGGCTTGTCTTCCAGAGCCAAGCGGCTAGGCCTCAAGATGAAAGACT
TTCTGAGCGAGGGAGTGACGGTATGCGTTGCAGCAGCATCACCATCATTA
TCATCATCAGCAGGCGACGAGGCGGCTGCAACGGCAACAGCAGCGGCAGG
AGCAGGGGCAGATCAATCGCGCGGCCGCCGTCTGAGCCGGATTCACCGAA
TGGTGAGACGGACAAGCAGAAGAATAACACGATTCAATGGTTTTTTGTAG
GGACATTTGTAGGGACACACGAGCAAATAGATGTATATGTGTCAAATTGT
GTTTTTTCGTCATTGGCGGAGCTTTCCTCCGTCGTCTCTGCGTTCTTCAT
CGCGCCTTCTTGTGCGCGTACGCAGGAGGTCCGTAACTCAACGTATGTGG
GTATGTCTGTGTCAGCTTCCAATTCACCGTACTTATGTATTCATGCATGC
ATGCATGTATGTGTAGCGTTGTGATGTACCGGGGACACGTTCTTTTTCGA
ACTGTTCGGACCCCACACTCTGTCTTTTCGTTGTTTTTTTGTCCCGCCGC
TTCACCCCCGGTGGACTCGTACCTGACCTACCGAAGGGGAACCTTGTGTA
TTTACATGCACATGCGTGTGTTTTGACGATCAAAAATACTCCGAGGGTAC
GTATTTAAGGATGTCGAATCATTCAATCGCTAAATCCGAAGGAGACAAAA
ATGGTGCTGCAGTGATTTTTGCAGGCTCCTCAATCCATTTTCCAAAGGAC
TGTGTGCAACTGAGTTTCTCTCGAAGTGCACTACAAAAGGTGCTCAAACG
GCTCTCCCCTCCCCGCATACAGCCCCCCAAAATGCACTGCTGTCGTTGTG
TATTTTTGTATTTTTCGCACCTTTAACTCAGCCGACATGTTTTAAAACAG
GGTAGGTAACCGAGAAATCAAACACCTGTTTTTGTTGCGGCAGGTCCTCC
AAGCTCAAACTGAACCGGAGTCTACGGCCAGGCCAGGGCCTGGGGGACAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGCCGGAATCG
AGAACACTCATCCATCACGAAACAGGCGCGCCAGCTCCGTGCCACCGTGC
TGTCGGGGCAAGCCTTCGGGTCCTGGCTCGATCGGCAGGAGTCTAAACGG
GCGACCGCACGGACAGGAGCAGGGACAGGGGCAGGGGCAGGAGCAGGGGC
AGGAGCAGTGCGGACAGGAACCGGCGGCGGTAAGGGAAAGGCGGCCGCTC
GACCGCTGATCTTGCCCCGCCAGCAGCAGGCCGGGACGAGTAGGTTCAAG
TCGCAGGAGCACCCCCGCGTCGTGATGAAGGACTTGGATGGACTGGAACC
CGATCGAGTACAGGTGAGCCCCAAGGCCTCCTCCCACACGTTCATGTGTT
TGTAGTCTTCTGGGCGGTCGAGCGGTTTCTCCGCGAAGTCAGAGAGCGAG
GAGGCGTGTGCGCGTCGAGGGCGATGGCGAGGGGAAGGGTAATGGGTATG
TTTTTTTGTACGCGGTAGCTGATGCATGGTACAAAAGAGGTGAAGGCAGG
ATTGCTGACGTGGAAAGGGCTTTTCGAATTCAGAAAAAAAATCGTGCGTT
GTTGCTGCTTGTGCTGCTGGTGCTGCTGCTTGTTGTCGGTATGCACAGCA
GTAGAGCTTCTGGCTGTTTTCACTCGCAGAGCGATGGTTTTACTAGAAAT
CGTACCCCAACAGCCAGCTGCAACCTCAAACATATCCGTGCCCTTGAAGC
AAAAGAGTGTAGGCAGCCAACTCATGCCGAACAGCAACACACTCTTACTC
AAATATCTTAACAGCTTGCTCATTCCGCCTCATCCTAACGTAGGTACTTC
CAAAAATTATTTTTGCCACGAAAAACCCGAGTGAGTGCACCAAAACGGCC
CGCAAGGCGCATGGCGGCACCCTTGACGTTATTTCCGCGTTATTACACGG
ACCGCATGGTTGACGTTTGACTTCCCTGTCTTTTTGTGCCTGCTCCCGGT
TGTTCCTGGCGCAGGCGTTTCCGCCAGAGCTTCTGCGAAAATGCAACCTT
CATACGGACGCTCCCCCGGGCATCTGCCCCTTTACCCCACGGGAGCAGGT
ATGGTGTCCACCGCTTCAGGTTTCGTAGTATTCCACCATAGCAGTGCAGA
GAGAAGCAATTGGTCGTGTTTGTTTTTCCATCTATTTCTGATTTGGTATA
AACTCTTTGGTCGGTGGGTGGTGCCGTCTAGTTGTGAAGCCGAAGTAAGG
ACACTGGTTACCAGGTGTCACTGTATCAACTTAGATCAAAGTTAGCAGCT
TGTTTGACACAGGGTTGTGTTTGTTCGTTCGCTTCTCCAAAACCGAACTC
GTCCCGAACACCGAAGATGTCTCAGTCAGCGATGCAACGGTGCGATGCGC
GATGGTGCTGCGGTCGCTGCTGTCCTCCCTTGTCGTGCTGCGCGTGTGTG
GCCCGTATTACAGTGGCACCGCGAGGTGCTCAGGGTGAAGAAGAAGGACA
CAGCAGGTGCGGCAAAGGTGGCGGCTAGGATGCTCCCTAGTGGCGCCCAG
AAAATCAGGCGGGGGGGCTGGTGCGAGTGCTGCGAGAGGCAGTACATCGG
AACCATGTCTGAGGTGAGTGGAGATGGTGCACGCGAGGAAGTTCGGCGTA
CTTTGGCAAAACTCTGAAGAGTGAGTGCAGTTGAAGACAATTTGTGTGGA
AGGAACGCCTATTTGGACCCACAGTGTCCAATTCCCTGTGTGTCTAAATA
AAATGGCCACTTTCAGTCTGTTTCTGTAGCGTTTCTTGTTTTTCTAGCTC
TAAAAACAGGCACATTTCATACGAAATGTTCCTTACATGTATGACGGCAT
GTGGCTCATAGTTGAGGGCATCCGGCGTTTCGTTTCTTCTGCAGAGCCCA
GCGACAGATATCTCGACTGTATATATTCTGAAAACCGCGCCGACCCTGTT
TTTTTTTCACGTTTTTCGCGAATACTCCGCCCCTTTGTCGCTGAAGGGGG
GAAGGGGCGTTCGGAAACCGCCAACATTGTTTTGGCAGCCTATTCTCAGA
ACCAGATAGAGTGCACTGGACGAGTCGTTATCGACTTGTATGTTTCACTT
TGGCGTGGCAGGTCCGACAACTCCTTTGCAGAGGACTTTTGCCTTCATGA
ATACCAACACCCTAGTTTGGCGTTGTGATGCGTTATCTACTGAGCCTAGG
GAGGAGAAAACTCATCGACAATGTTACAAAAGCTTGTCGAGACCACGGAA
ACAGTTCCCTGTCGTCTCTACGCGCAAGCCACCTTGTTCCAGTCCCATCC
GACTGCGGCACACTCTCCCTCTCAACACACATGAATGTCGATTTTGCACA
CATATTTCGACAAAACATCTTAAGCTCAGTGTCGCCTTCATCCCCCCCCC
CGTCCTCTTTCCACATTATCATGTTTTCCCGCAGCACTGTGCGGGTGACC
CGCACCGCGCTGCTGTGGCTCGCGACCCAAACTACGCGGTGCTGCTGGCG
CTTGAGAGCTGGACGGGCGCGCAGGATGGTTGGGGCTGCGCGGGCAGTAC
TGACACCGAAGCTTCGGCAGCAGATGGACCGACGGCAGGAAAAGTAGCAA
CAGAAGCAGCAGCCCTTTCCACTTCGTCGGCGGTAGCAGCAACGTCCGGA
GCTGGGGCTAGCGGTAGTAATGTTACGACAACGGTGATACTCGCGCCGGT
TTCGTTGGCGGAGGCAATGACAAACAGACGCGAAGAAGGTGGCAAGGTTC
CCCCCCCGCCGGCGGCGGCGGTAAACGAGAGTTTGCAAGGAGGAGGCGGT
GAGAAGAAGCTTGCAGCGCCGAGGGCCCGTGATTCTACTCCGCGCCGCCG
TCCCACGAGCAGCGGGGAGAGCGTCAACGGCAACGAGGAGACCTTGGACT
CAAAGGAAGACTCACCCTTGCGAGGAACTTTATCTCCGTCCGGACTACGC
GACGCGACGGCCGGCGGGAGGGCCCTGAGAAGTTCGCCACGCCATCGATC
AAAGGGCAAGGTGGTGCGTTGCCGCGAAGCAGGGGCAGAAGCAGCGGGGG
GAGGAAGTGGAGGAGGAGGGGCTGGTGGTCGAAGAGGAGGACAGCGGTGT
GTATCAACCCAAGCGCTTACGACAATAGTTCAACCGCGCCCCAGAAGCCT
GGGCAGCGGTGATGTGATTTCCGATAGTGGGGGCTGCGCCGGAAATCTGG
CGACGGGAGAAGCTAGCGCCTTGTACGGGCGTGGTGCGGATGATGCGATA
TCGTGCCGCGAAAAGATCCCCGCAACACACCGGGAGGATACGGCGCGCAG
GGTGGCGGTGGCAGACGCAGGGATCCCCGCACCTCCTGCCGGCAAATACC
CGCATGAGCAAGCCATAACCGGACGCAGAAATAGATCAAGCCCTCTCCCG
TGCAGATTGTCTAGACCACAAGATGTGTGTGGAACGCCGCGGGTAGACGA
ACAAGCGGGCAGGGGGCTTAGTGATTTCAAGGGAGCAGCCTCCCCTGCCG
CCGCCACCGGAGCGACTGCTACACCCGCCACGTCTGCTCTTAGCGTTCTG
TCCTCCCTCACGGACTGCTGCAGCAAGCAGAGTAGCAGTAGCAGCGAAAG
GCCGATATTTGTGGCCGAATCTCCCGCACGTTTTCAAGCGCACGACGGCT
CATCGTCACCGCCATCATTGTCGTCGTTGCTGCCGCCGCCGCCGCCGCCG
CCACCGTCGTCTTCACAGCGTGTCGGGAGACACCCCCAACGCGGCGGTGG
CAATGACCGAGGGCGTAGTAGCTGCAAGGAAGAGACGGCGGGGCCGCCTT
CCTCGACTGCGAAAGCCTACACGGACGCCTCGTCCTCGCCTCCGGAAGCG
GCACGGAGGAGCTTGCGAGAAAGACTCGGTGGCGTCAAGACCGACAGCAG
CATCCAAGCAGCCTGCGGCACGCTTGCGTACCCACCGGGTGCACACAGGG
ACAGAGGCAAGGACACCGCTGGCGGCTCAAATGATCAGCCGATCCTTTCG
GCGCCGGGTGTTGCTAGCGAAGAAAATACCGACGAGATCGTCTCCCCTTC
CTCGGTGGTGAGCGACGAGGAGATCGAAAAGAGGAGGGAAAAGAGATTAA
AGCGACAGCTGGCGCTGCTCGCAGATTCACCGGCGTTCTGCGGCGTTGGA
GCCTCGCCTGCTGGTTCCGCAATTTCCTCGGTCGTTCTAGGGCAGACCGG
TACCCGCTCCGACGACGGCCGCCGCTCGTCCTCCCGTGTGAGGTCTTGCG
TCGACCATGGAAAGAGCGCAAGGATCAGCTGCAGCAGCAGCGGCGGCGGC
GGCAGCGGCAGCCGCCGTCGTTCGAGAGACGACCACCGCGACGGCAGCTA
CGGCTCCGCAACGAAGACGAGGAACGGCAGCGGTGGCACTGCCCGCCAGC
AAAGCGAATCGCTGCCGTCCACGGGAGGAAGCAATAGAGGAGGACAAGAC
TGGCGAGTGAAGAACAGTAAGCGGAAGGAGCGAGACGAGGACGAGCATGG
GCCGGGCGGGGGCGGCTCAGCAACAACAGAGGAATGCCGCCATGTTTACC
GCTACCCGACAAGGACTGCGGTGGCAGTAGCGACCACGACGGTGATCGGG
GAGAGAAAAAGGTCGGACGACGCCGAATATAAGAATGGCGGTAGCGAATC
GGTGTTATCGGGAGCACGGCGGCGTCGCGATCGCGCGTCGTTGTCTCCTG
ATTCTCCCCGAGAAGGACCCAAACCCAAGAGAGCGAGGAGGTCGACCGGA
ACCGGAGGCAGCCGCTCGGCCGGCGACCACAAAGACGAACCTCTTTCCTC
TATGATCGGCGTTACGGTCAGCGGCAGTAATTCAGATTCGTCAGGCAGAG
AGAAGGACAGCAGTAGCAAGAATGGGGGCGGCGTGAGGAATCGCACCAAG
CGGCAAACACCAACCCCAAGTACCGCGAGCAGAATGGGACTGGAAACTGT
CGGATATTCGTCCGATGGCGGTAGCGGGGGCGGGTACGCTGAGGACGACG
CGGATCAGACGAGCTCACCACCATCGCTGGATCGAGCGAACGGATCCGAA
GCGTCCCATGCAGCTTGGGTTTGAAATTTGCGGAGGATCATACGCGAGTG
ACTCGCGGTGGTAGCAGCTCTTCCTCACCGGCTGCTGGTAGCACGCGCGC
CACAGCAGTTGGGGGAAGGAGCGGAGAAAGACCACTGGGGAAGCGGGCAC
GGGCAACACCTGCCAACCCGTCTCCGCCGTGCAACCGTCCGGCGTCGCTA
CGGCTCGGTCAGCTGCTCGCGATTATTCATTCCGTCTCTCCTGTGCTTCG
GTTGTGTCACGCGTTATGATGAAAGTCGAGCATCTTGATAGTAGGGGACC
CTTCCCGTGGTGTTGTTGTCTTGTGACAGTGGAATATTTGCAAACCATCG
ACGGCAATAAGACGCCACCGCGCTGCTGTTGTACCACGTGTGCGTACGAT
CGCCCGATTGGAGGGGCATGTATACATGAAGTGATCATCAGAGGCTGCTC
TGTATCACATGTCAATGAAACCCTTCCCTGAGGGCGTGCGGTATCTCGCG
GTGTGATGGTCGAGGTCCGGGTGTGAGAGGTGTTTCGAACAGAGAGGAGT
GGAAAGGAGAAGAAGTTGTGTACGAACGGGTTCAGGAACATTCTTCGATG
TCGTTGTTTTCCTTTTTAAGTGTGCGTGTCAGTGGATGATGGGACAATCC
TAATCAGATGATGATGGCGTGTCATACTTACGGGCGTTCGGATTGCTGTC
CATCATGAGTATTTTTTTTAGGACAACAATGAACGGTCGGCAGAGGATGC
GCAAGTTGCGCGAGAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig8:239628..247843-

>mRNA_P-littoralis_Contig8.48.8 ID=mRNA_P-littoralis_Contig8.48.8|Name=mRNA_P-littoralis_Contig8.48.8|organism=Pylaiella littoralis U1_48|type=CDS|length=3471bp|location=Sequence derived from alignment at P-littoralis_Contig8:239628..247843- (Pylaiella littoralis U1_48)
ATGGGGTATTCAACACAGGATACGTTTTACGTAGATCCCAGAGTGGAAGG
GTGCGACGGCTTGTCTTCCAGAGCCAAGCGGCTAGGCCTCAAGATGAAAG
ACTTTCTGAGCGAGGGAGTGACGGTATGCGTTGCAGCAGCATCACCATCA
TTATCATCATCAGCAGGCGACGAGGCGGCTGCAACGGCAACAGCAGCGGC
AGGAGCAGGGGCAGATCAATCGCGCGGCCGCCGTCTGAGCCGGATTCACC
GAATGCAGCAGCAGCAGCAGCAGTGCCGGAATCGAGAACACTCATCCATC
ACGAAACAGGCGCGCCAGCTCCGTGCCACCGTGCTGTCGGGGCAAGCCTT
CGGGTCCTGGCTCGATCGGCAGGAGTCTAAACGGGCGACCGCACGGACAG
GAGCAGGGACAGGGGCAGGGGCAGGAGCAGGGGCAGGAGCAGTGCGGACA
GGAACCGGCGGCGGTAAGGGAAAGGCGGCCGCTCGACCGCTGATCTTGCC
CCGCCAGCAGCAGGCCGGGACGAGTAGGTTCAAGTCGCAGGAGCACCCCC
GCGTCGTGATGAAGGACTTGGATGGACTGGAACCCGATCGAGTACAGGCG
TTTCCGCCAGAGCTTCTGCGAAAATGCAACCTTCATACGGACGCTCCCCC
GGGCATCTGCCCCTTTACCCCACGGGAGCAGTGGCACCGCGAGGTGCTCA
GGGTGAAGAAGAAGGACACAGCAGGTGCGGCAAAGGTGGCGGCTAGGATG
CTCCCTAGTGGCGCCCAGAAAATCAGGCGGGGGGGCTGGTGCGAGTGCTG
CGAGAGGCAGTACATCGGAACCATGTCTGAGCACTGTGCGGGTGACCCGC
ACCGCGCTGCTGTGGCTCGCGACCCAAACTACGCGGTGCTGCTGGCGCTT
GAGAGCTGGACGGGCGCGCAGGATGGTTGGGGCTGCGCGGGCAGTACTGA
CACCGAAGCTTCGGCAGCAGATGGACCGACGGCAGGAAAAGTAGCAACAG
AAGCAGCAGCCCTTTCCACTTCGTCGGCGGTAGCAGCAACGTCCGGAGCT
GGGGCTAGCGGTAGTAATGTTACGACAACGGTGATACTCGCGCCGGTTTC
GTTGGCGGAGGCAATGACAAACAGACGCGAAGAAGGTGGCAAGGTTCCCC
CCCCGCCGGCGGCGGCGGTAAACGAGAGTTTGCAAGGAGGAGGCGGTGAG
AAGAAGCTTGCAGCGCCGAGGGCCCGTGATTCTACTCCGCGCCGCCGTCC
CACGAGCAGCGGGGAGAGCGTCAACGGCAACGAGGAGACCTTGGACTCAA
AGGAAGACTCACCCTTGCGAGGAACTTTATCTCCGTCCGGACTACGCGAC
GCGACGGCCGGCGGGAGGGCCCTGAGAAGTTCGCCACGCCATCGATCAAA
GGGCAAGGTGGTGCGTTGCCGCGAAGCAGGGGCAGAAGCAGCGGGGGGAG
GAAGTGGAGGAGGAGGGGCTGGTGGTCGAAGAGGAGGACAGCGGTGTGTA
TCAACCCAAGCGCTTACGACAATAGTTCAACCGCGCCCCAGAAGCCTGGG
CAGCGGTGATGTGATTTCCGATAGTGGGGGCTGCGCCGGAAATCTGGCGA
CGGGAGAAGCTAGCGCCTTGTACGGGCGTGGTGCGGATGATGCGATATCG
TGCCGCGAAAAGATCCCCGCAACACACCGGGAGGATACGGCGCGCAGGGT
GGCGGTGGCAGACGCAGGGATCCCCGCACCTCCTGCCGGCAAATACCCGC
ATGAGCAAGCCATAACCGGACGCAGAAATAGATCAAGCCCTCTCCCGTGC
AGATTGTCTAGACCACAAGATGTGTGTGGAACGCCGCGGGTAGACGAACA
AGCGGGCAGGGGGCTTAGTGATTTCAAGGGAGCAGCCTCCCCTGCCGCCG
CCACCGGAGCGACTGCTACACCCGCCACGTCTGCTCTTAGCGTTCTGTCC
TCCCTCACGGACTGCTGCAGCAAGCAGAGTAGCAGTAGCAGCGAAAGGCC
GATATTTGTGGCCGAATCTCCCGCACGTTTTCAAGCGCACGACGGCTCAT
CGTCACCGCCATCATTGTCGTCGTTGCTGCCGCCGCCGCCGCCGCCGCCA
CCGTCGTCTTCACAGCGTGTCGGGAGACACCCCCAACGCGGCGGTGGCAA
TGACCGAGGGCGTAGTAGCTGCAAGGAAGAGACGGCGGGGCCGCCTTCCT
CGACTGCGAAAGCCTACACGGACGCCTCGTCCTCGCCTCCGGAAGCGGCA
CGGAGGAGCTTGCGAGAAAGACTCGGTGGCGTCAAGACCGACAGCAGCAT
CCAAGCAGCCTGCGGCACGCTTGCGTACCCACCGGGTGCACACAGGGACA
GAGGCAAGGACACCGCTGGCGGCTCAAATGATCAGCCGATCCTTTCGGCG
CCGGGTGTTGCTAGCGAAGAAAATACCGACGAGATCGTCTCCCCTTCCTC
GGTGGTGAGCGACGAGGAGATCGAAAAGAGGAGGGAAAAGAGATTAAAGC
GACAGCTGGCGCTGCTCGCAGATTCACCGGCGTTCTGCGGCGTTGGAGCC
TCGCCTGCTGGTTCCGCAATTTCCTCGGTCGTTCTAGGGCAGACCGGTAC
CCGCTCCGACGACGGCCGCCGCTCGTCCTCCCGTGTGAGGTCTTGCGTCG
ACCATGGAAAGAGCGCAAGGATCAGCTGCAGCAGCAGCGGCGGCGGCGGC
AGCGGCAGCCGCCGTCGTTCGAGAGACGACCACCGCGACGGCAGCTACGG
CTCCGCAACGAAGACGAGGAACGGCAGCGGTGGCACTGCCCGCCAGCAAA
GCGAATCGCTGCCGTCCACGGGAGGAAGCAATAGAGGAGGACAAGACTGG
CGAGTGAAGAACAGTAAGCGGAAGGAGCGAGACGAGGACGAGCATGGGCC
GGGCGGGGGCGGCTCAGCAACAACAGAGGAATGCCGCCATGTTTACCGCT
ACCCGACAAGGACTGCGGTGGCAGTAGCGACCACGACGGTGATCGGGGAG
AGAAAAAGGTCGGACGACGCCGAATATAAGAATGGCGGTAGCGAATCGGT
GTTATCGGGAGCACGGCGGCGTCGCGATCGCGCGTCGTTGTCTCCTGATT
CTCCCCGAGAAGGACCCAAACCCAAGAGAGCGAGGAGGTCGACCGGAACC
GGAGGCAGCCGCTCGGCCGGCGACCACAAAGACGAACCTCTTTCCTCTAT
GATCGGCGTTACGGTCAGCGGCAGTAATTCAGATTCGTCAGGCAGAGAGA
AGGACAGCAGTAGCAAGAATGGGGGCGGCGTGAGGAATCGCACCAAGCGG
CAAACACCAACCCCAAGTACCGCGAGCAGAATGGGACTGGAAACTGTCGG
ATATTCGTCCGATGGCGGTAGCGGGGGCGGGTACGCTGAGGACGACGCGG
ATCAGACGAGCTCACCACCATCGCTGGATCGAGCGAACGGATCCGAAGCG
TCCCATGCAGCTTGGGTTTGA
back to top