mRNA_P-littoralis_Contig799.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig799.30.1
Unique NamemRNA_P-littoralis_Contig799.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig799.30.1 vs. uniprot
Match: D7FPH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH8_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 1.330e-68
Identity = 120/221 (54.30%), Postives = 154/221 (69.68%), Query Frame = 1 
Query:  238 KERSFSGVGSTGMVGYCMKDQGHPHYKS*RKGVSAAEVNTALAEYRRIQRQTVSDFRVELGKKNIWAVVRRQRKESFQGLSASVLQIVTWIIQDGEFFPSHSWICPTSANPMDAERAEAYYTALMSPQRFTRKHCYVLLFSGRQGGRVSTSFAL*DNMVRAF*DLTVDQAKGCSHDRIQLRGELDAAQLRLATDIAAHSSEPDAVVRYTLSPDSDASDSND 900
            K+++FSG     MVGYC KD+G  H+K+  KGVS  EVN ALAEYR +QR  VS+ R ++GKKN W V+RR ++E  +G+S S +Q+++W I DGE  PSH+WICPTSA  M+A RA+AY+TALMSP  FTRK  Y+L FSG QGGRVS+SFA  D   R F ++TVDQAK CSHDR +L G +D A+ R+  DIA     P  VV + +  DSDA   +D
Sbjct:  415 KQQTFSG-----MVGYCSKDEGRSHFKTVTKGVSRTEVNIALAEYRTLQRFVVSELRTDIGKKNFWGVLRRFKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVSSSFAKWDYQDREFSEMTVDQAKVCSHDRQELEGAMDIARERIMRDIAESHRAPAGVVNFPVDADSDAGSDSD 630
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BLAST of mRNA_P-littoralis_Contig799.30.1 vs. uniprot
Match: D7G8U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U7_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 1.400e-64
Identity = 111/221 (50.23%), Postives = 148/221 (66.97%), Query Frame = 1 
Query:  238 KERSFSGVGSTGMVGYCMKDQGHPHYKS*RKGVSAAEVNTALAEYRRIQRQTVSDFRVELGKKNIWAVVRRQRKESFQGLSASVLQIVTWIIQDGEFFPSHSWICPTSANPMDAERAEAYYTALMSPQRFTRKHCYVLLFSGRQGGRVSTSFAL*DNMVRAF*DLTVDQAKGCSHDRIQLRGELDAAQLRLATDIAAHSSEPDAVVRYTLSPDSDASDSND 900
            ++++FSG     M+GYC KDQG PH+K+  KGVS  E+N ALAEYR++QR  V++ RVELGKKN W ++RR ++E  +G+  S LQ+VTWIIQD +  PS SWICP+SA PMDA RA+A+  AL  P  F RKH Y+L F+G QG R+ TS    D   R F D+TVDQAK CSHD ++L G +DAA+ R   ++A        V  +   PDSD+  ++D
Sbjct:   66 RQQTFSG-----MLGYCSKDQGRPHFKTSSKGVSQTEINVALAEYRKLQRVCVTEDRVELGKKNFWGLLRRFKQEHLRGIFVSPLQMVTWIIQDQQAVPSSSWICPSSAFPMDAARADAFGIALFCPSLFIRKHAYLLFFAGGQGDRIITSHEDWDTQDREFADMTVDQAKVCSHDHLELEGAMDAARERAVREVANARRYLPGVANFGFGPDSDSDATSD 281
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BLAST of mRNA_P-littoralis_Contig799.30.1 vs. uniprot
Match: D8LBK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK2_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 2.730e-49
Identity = 86/149 (57.72%), Postives = 109/149 (73.15%), Query Frame = 1 
Query:  238 KERSFSGVGSTGMVGYCMKDQGHPHYKS*RKGVSAAEVNTALAEYRRIQRQTVSDFRVELGKKNIWAVVRRQRKESFQGLSASVLQIVTWIIQDGEFFPSHSWICPTSANPMDAERAEAYYTALMSPQRFTRKHCYVLLFSGRQGGRVS 684
            K+++FSG     MVG C KD+G  H+K+  KGVS  EVN AL EYR +QR  VS+ R E+GKKN W V+RR ++E  +G+S S +Q+++W I DGE  PSH+WICPTSA  M+A RA+AY+TALMSP  FTRK  Y+L FSG QGGRVS
Sbjct:  240 KQQTFSG-----MVGDCSKDEGRSHFKTVTKGVSRTEVNIALTEYRTLQRSVVSELRTEIGKKNFWGVLRRFKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVS 383
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BLAST of mRNA_P-littoralis_Contig799.30.1 vs. uniprot
Match: D7G6N0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N0_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.040e-26
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:  469 QGLSASVLQIVTWIIQDGEFFPSHSWICPTSANPMDAERAEAYYTALMSPQRFTRKHCYVLLFSGRQGGRVSTSFAL*DNMVRAF*DLTVDQAK 750
            +G+S S +Q+++W I DGE  PSH+WICPTSA  M+A RA+AY+TAL+SP  FTRK  Y+L FSG QGGRVS+SF   D   R F ++TVDQAK
Sbjct:  219 RGISVSPVQLISWDINDGEGMPSHTWICPTSAFAMEAARADAYFTALISPSLFTRKDAYLLFFSGGQGGRVSSSFEKWDYQDREFSEMTVDQAK 312
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig799.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FPH8_ECTSI1.330e-6854.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8U7_ECTSI1.400e-6450.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LBK2_ECTSI2.730e-4957.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6N0_ECTSI2.040e-2659.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig799contigP-littoralis_Contig799:102061..104400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size985
Hectar predicted targeting categoryother localisation
Exons4
Cds size258
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig799.30.1prot_P-littoralis_Contig799.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig799 103439..104366 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791630.4741852-UTR-P-littoralis_Contig799:102060..1025861680791630.4741852-UTR-P-littoralis_Contig799:102060..102586Pylaiella littoralis U1_48UTRP-littoralis_Contig799 102061..102586 -
1680791630.487131-UTR-P-littoralis_Contig799:103271..1034381680791630.487131-UTR-P-littoralis_Contig799:103271..103438Pylaiella littoralis U1_48UTRP-littoralis_Contig799 103272..103438 -
1680791630.545602-UTR-P-littoralis_Contig799:104366..1044001680791630.545602-UTR-P-littoralis_Contig799:104366..104400Pylaiella littoralis U1_48UTRP-littoralis_Contig799 104367..104400 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791630.5012934-CDS-P-littoralis_Contig799:103438..1034591680791630.5012934-CDS-P-littoralis_Contig799:103438..103459Pylaiella littoralis U1_48CDSP-littoralis_Contig799 103439..103459 -
1680791630.5133572-CDS-P-littoralis_Contig799:103783..1039771680791630.5133572-CDS-P-littoralis_Contig799:103783..103977Pylaiella littoralis U1_48CDSP-littoralis_Contig799 103784..103977 -
1680791630.526264-CDS-P-littoralis_Contig799:104323..1043661680791630.526264-CDS-P-littoralis_Contig799:104323..104366Pylaiella littoralis U1_48CDSP-littoralis_Contig799 104324..104366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig799.30.1

>prot_P-littoralis_Contig799.30.1 ID=prot_P-littoralis_Contig799.30.1|Name=mRNA_P-littoralis_Contig799.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MSKPATRINVLSTTGLVEIKGGYGLRDKIKQEGGRIQPSAVDDIVAAKSS
VIKTLNYSDARTLANFLKKSARSAGLEAQAWWDIA*
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mRNA from alignment at P-littoralis_Contig799:102061..104400-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig799.30.1 ID=mRNA_P-littoralis_Contig799.30.1|Name=mRNA_P-littoralis_Contig799.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2340bp|location=Sequence derived from alignment at P-littoralis_Contig799:102061..104400- (Pylaiella littoralis U1_48)
CTGGTTGTCGCCACTGACGGTCAGGCCCTGACGCATGTCAAAGCCGGCGA
CCAGAATTAACGTCCTCAGTACCACAGGTAATGCTTGGACGAATGCTTTC
AACCCTTTAGATTGCTGCGCACCTACAAAATTTAACCTAACTCCACGGCG
TCGACATATTTTCAGCCGCAATAGAACCTTGTCCATGTAGCACGATACCT
GCAGGAATTCCTCAATAAGCGTTGATGTGCGTCCGCTCTAATTCCCCTAT
TCATCGTTCGGATTGGTCCGACAATGGTTTGTGCCTCATGGATGTCGCAC
TTTTAATACCCAAATTATAGCCTCGTGATACTACTCTCGATCCGCCTTTT
GACTTACCATTAAACAAAATTTGATGATGTTGACAACGATCTAGCATGGT
AAACGCCTTGTTTCCGCCGGCAGGGCTTGTCGAGATTAAAGGCGGGTACG
GACTTCGGGACAAAATTAAACAGGAAGGAGGGCGAATTCAACCCTCCGCT
GTGGACGACATCGTCGCCGCCAAGTCGTCGGTTATCAAAACTCTCAACTA
CTCCGACGCCCGCACCTTAGCCAACTTCCTGAAAAAGAGCGCTCGTTCAG
CGGGGTTGGAAGCACAGGTGTGTCCTACTTTCTTTTGATGAAATATTTCC
TCATGAATTGGACACACATCACTAAGAATGCCTATTGCGAATTGTGTTCT
TGACGATTTTAAGCCTCTGACAATATTATTACACCTTGCAGCCCTCCACA
AAATAAAACTCGCGACTTATTGCAATTGCAACGGTAGTCTGCACATAGTG
TTCATGTACAGCCCTTAACAATCCCGAATAAATTGCTTGACGCCCAAACA
TATTCTTACCAGCTGCACTGATTCACCTCGCGACTGATTCTTGTCTTTTC
GTCTGTGCCTTCCTCGTCCATATCATGTTATTTTCTGCTAGGCATGGTGG
GATATTGCATGAAGGACCAAGGTCATCCTCACTATAAGTCATAACGTAAA
GGAGTGTCGGCTGCCGAAGTCAACACCGCCCTCGCCGAGTATCGGCGCAT
CCAGCGTCAGACCGTCTCTGACTTCCGCGTCGAGCTCGGGAAAAAAAATA
TCTGGGCAGTCGTTCGTCGGCAGCGAAAGGTGTGTACGCCTCTATCTGTA
ATTTTTCATGATAAATCCACAAATAGCTTGTTCCCATTCCAGTTTTGTTT
ATAACCTTCCTCTTATTCTAGTACCAACATACCTGAACATTATGTGGTGC
GATTAATCACATTGTTTTTATACCTCCCATCTACCTCCTTCTATTTCATA
TACAAGTATCGTTATTTTTTTCGCTTTTAATACAATCTTGATGAAAATGT
GCGAGTCCCAGCAACATTTACACATCATTTTCATTCTAGTTCTTCTTCTT
CCGCATATACTTGCTCCTCCTTAAAGTACAACGTGATAAAGTTGAACGAG
CTGCTCTCGCGTTGATTTTTGGCGCACATCACGCTCTATGACTTAAGACG
TCATGCCTTCGCCGCGCATTCTCCGACCTGCAATACCGTGATTAGTGATA
TCATGTACGTGACTTTTCATTATTCACTTTTGCATTTCTTCACGCCTAAA
GAATTCCCTGCAAAATACTTCGTACATCAAACATCTAGGTAGTCAGCCAA
ATTATGAAGGGGTGCGCGTCTTGCATCACACCTTTAGTTTTCTGCCCAGT
GGGATTTCGCTTTCACAGTTACTGGCACTTTTATCCCATCCATGCATCTT
GCATACAACTCATGTCTCATATCTCGCGGACGCTCCCTCCTATTTTATGC
CTCTCCGGCGTCAGGAAAGCTTTCAAGGACTCTCGGCTTCTGTACTACAG
ATAGTGACTTGGATAATCCAGGACGGGGAGTTCTTCCCTTCCCACAGCTG
GATATGCCCGACGAGCGCCAATCCCATGGACGCAGAGAGGGCGGAGGCTT
ACTACACCGCGCTCATGTCGCCGCAACGTTTCACCCGCAAACACTGCTAC
GTCCTCCTCTTCTCGGGTAGACAAGGAGGGCGAGTCAGCACCTCCTTCGC
TCTTTGAGACAACATGGTCCGAGCTTTCTAAGACCTCACCGTCGACCAGG
CCAAAGGGTGCTCTCACGACCGCATTCAACTCCGCGGAGAACTCGATGCT
GCCCAGCTACGTCTTGCGACGGACATCGCCGCCCACAGCAGCGAGCCCGA
CGCCGTCGTTAGGTACACTTTGAGTCCTGATTCTGATGCAAGCGACAGCA
ACGACCCCCCTGTCCAAACTGTCGACGTCGGCAACCAACTCGGCTGGATG
CGCGACCCACCTCCCGTTGCAATGCCAGCGCCGTCGGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig799:102061..104400-

>mRNA_P-littoralis_Contig799.30.1 ID=mRNA_P-littoralis_Contig799.30.1|Name=mRNA_P-littoralis_Contig799.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig799:102061..104400- (Pylaiella littoralis U1_48)
ATGTCAAAGCCGGCGACCAGAATTAACGTCCTCAGTACCACAGGGCTTGT
CGAGATTAAAGGCGGGTACGGACTTCGGGACAAAATTAAACAGGAAGGAG
GGCGAATTCAACCCTCCGCTGTGGACGACATCGTCGCCGCCAAGTCGTCG
GTTATCAAAACTCTCAACTACTCCGACGCCCGCACCTTAGCCAACTTCCT
GAAAAAGAGCGCTCGTTCAGCGGGGTTGGAAGCACAGGCATGGTGGGATA
TTGCATGA
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