mRNA_P-littoralis_Contig799.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig799.31.1
Unique NamemRNA_P-littoralis_Contig799.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig799.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig799contigP-littoralis_Contig799:105086..106986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size427
Hectar predicted targeting categoryother localisation
Exons5
Cds size312
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig799.31.1prot_P-littoralis_Contig799.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig799 106087..106986 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791629.6576798-UTR-P-littoralis_Contig799:105085..1051421680791629.6576798-UTR-P-littoralis_Contig799:105085..105142Pylaiella littoralis U1_48UTRP-littoralis_Contig799 105086..105142 -
1680791629.676835-UTR-P-littoralis_Contig799:105657..1057121680791629.676835-UTR-P-littoralis_Contig799:105657..105712Pylaiella littoralis U1_48UTRP-littoralis_Contig799 105658..105712 -
1680791629.6895838-UTR-P-littoralis_Contig799:106084..1060861680791629.6895838-UTR-P-littoralis_Contig799:106084..106086Pylaiella littoralis U1_48UTRP-littoralis_Contig799 106085..106086 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791629.7334108-CDS-P-littoralis_Contig799:106086..1061721680791629.7334108-CDS-P-littoralis_Contig799:106086..106172Pylaiella littoralis U1_48CDSP-littoralis_Contig799 106087..106172 -
1680791629.7479076-CDS-P-littoralis_Contig799:106509..1065631680791629.7479076-CDS-P-littoralis_Contig799:106509..106563Pylaiella littoralis U1_48CDSP-littoralis_Contig799 106510..106563 -
1680791629.76094-CDS-P-littoralis_Contig799:106814..1069861680791629.76094-CDS-P-littoralis_Contig799:106814..106986Pylaiella littoralis U1_48CDSP-littoralis_Contig799 106815..106986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig799.31.1

>prot_P-littoralis_Contig799.31.1 ID=prot_P-littoralis_Contig799.31.1|Name=mRNA_P-littoralis_Contig799.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
LFTLHHPKPALFSASFPCAGLLLLTGPRGILIHNSLGRSSKHLKPVHQAR
LPHHHCRGEPFDINTREEPSLSTTAGERDILIQPSRPIIYASEARQSSPA
SPH*
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mRNA from alignment at P-littoralis_Contig799:105086..106986-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig799.31.1 ID=mRNA_P-littoralis_Contig799.31.1|Name=mRNA_P-littoralis_Contig799.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1901bp|location=Sequence derived from alignment at P-littoralis_Contig799:105086..106986- (Pylaiella littoralis U1_48)
CTGTTCACTCTACATCATCCCAAGCCAGCCCTTTTCAGCGCTTCCTTCCC
GTGTGCCGGTTTATTATTATTAACAGGCCCGCGAGGTATCCTGATACACA
ACAGCCTAGGCCGTTCATCTAAGCATCTAAAGCCTGTTCATCAAGCCCGG
CTTCCTCATCATCACTGCAGAGGTGAATGAAAGTACAGTTGGACACGCAT
TTATTAATTGAGTTATGTTATTGCCGTTGGCAGGCGAGACGTCCTGACAT
AACCTCCAGCCAATATTTTTTGCCTACATTTGTTGTGCCAGCTCAATTCG
AATTCATCAATTTTACTTCCGTACGAACAAAATATGTTGATGTGTTTATG
TTGCCGACCCCCATGTCATCCCGTCCCGAATCATTTAATTCCTCCCTTGT
CACTGTTTTATGACCTTTGGCAGGTGAGCCATTCGACATAAACACCCGCG
AAGAGCCCAGCCTCTCGACCACTGCAGGTGAATGCTTGTACTTGAGTTTG
ACACGCGCATCAATACATACTATTTGTTGAGTGCACATTCATTCATGTTT
CATTTGCGACACGACTCTGATTCGACATGATGAATGGTCCTGCCGATTCT
TACTACAAACCATCCATGAAATTAGACGGAACATCATCCATCAACTCTTT
TCGGCGTAATTTGAACTTCCGATAGGCCGACCTACATTGTTGTGATGAAT
AAATATATTTTGCAGAATTTGACACACGTGTTCCCCACTTTCTCTATTTT
TCTTACAACCTCGTACACGGTCTCTTCTTTTTCTTTCCCTCTACCGCCTT
ATTTTTATTGACAGGCGAGCGAGATATCCTGATACAACCGTCAAGGCCGA
TCATCTACGCATCTGAAGCCCGTCAATCAAGCCCGGCGTCTCCTCACTGA
CGGTGAATGAAAGCAAAGTTTGACACGCTCTTAGTGGTGTTCCGACTAAT
CCGCTTTAATTCTTGCACGAAGGACATATATTCCTTTGTTCATTTGTTGT
CGATGTTCATTAATTGCCGACATCTTTGTCAGCCTGTTCCGTGCCACGCA
ATTTTCCCTCACCACTGTTACTACTGTTGGCAAGTGACACGTCCTGACAT
AAACACCAGCCAATTTTAGTTTGCTTCAAATGTTGTGTCAGCTCTATTCG
AACTCACCAAATGTACTCCCGTCCGATCGAAATATTTCGTTGTTATCTTG
TTGCCTACACCCATGTCATCCCTTCCCAAGTAATGTCATTTCCCCCTTGT
TACTGCTGTTATTACCTTTGGCAGGTGAGGCATCCGACATAAAACACCAG
CCACGAGCCCAGCCTCTCGACCACTGCAGGTGAATGCTTGTCGACATCGA
CACGCGCATGAATACACATATGAGTCCCACGTCAAACCCATACTAGTGCC
CATGTATATTTCATTTGCGACACTACGCGGATTTCCCATGAATAGTCCTG
CCGATTCTTACTACAAACTAAAACTAAACACGAAATAATGCGGAACATCG
GCCATCATCTATTGAGGCAAAATTTTGGATACGCGGACCTACCATCGGTT
CGATGGAATAATACACTGCAGAAGTTGACACACTCGTCCCCCACTTTGTT
CTACTACTCTTACAACCTCGTACTACGTTTTTTTTTTTAGTAGGTGATTT
AGTCACGTCGTATACGCTGTTATTGAGTTATTATTTCTATTATTGTTGAG
TTCGAAGCCTTTCGCTTGAAACTCTTGAATAGATGTTATGCGATACCATA
CGATATCCTTTTTGCGTTTGTTTCCCAATCCTATGAGCCGAGACCAAGCG
CCATAATTGTCTCCCTCGACGCTGTTTTTTTTTTCTTTTGACAGGCGAGG
CATCTTTATATACACACCACAGCTTCCAGCCCGGCGTCCTCACCGTCTCA
G
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Coding sequence (CDS) from alignment at P-littoralis_Contig799:105086..106986-

>mRNA_P-littoralis_Contig799.31.1 ID=mRNA_P-littoralis_Contig799.31.1|Name=mRNA_P-littoralis_Contig799.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig799:105086..106986- (Pylaiella littoralis U1_48)
CTGTTCACTCTACATCATCCCAAGCCAGCCCTTTTCAGCGCTTCCTTCCC
GTGTGCCGGTTTATTATTATTAACAGGCCCGCGAGGTATCCTGATACACA
ACAGCCTAGGCCGTTCATCTAAGCATCTAAAGCCTGTTCATCAAGCCCGG
CTTCCTCATCATCACTGCAGAGGTGAGCCATTCGACATAAACACCCGCGA
AGAGCCCAGCCTCTCGACCACTGCAGGCGAGCGAGATATCCTGATACAAC
CGTCAAGGCCGATCATCTACGCATCTGAAGCCCGTCAATCAAGCCCGGCG
TCTCCTCACTGA
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