prot_P-littoralis_Contig798.29.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig798.29.1
Unique Nameprot_P-littoralis_Contig798.29.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length511
Homology
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 7.890e-67
Identity = 119/225 (52.89%), Postives = 156/225 (69.33%), Query Frame = 0
Query:  245 NLVDGGHTIVLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVG------GGIVLAAHNATFDRGFLHEEIHRARLGGLTIAR-AGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAPGISGRWRQVASTNPSCQIPV 462
            +L +G HT+V++D+ETTGLR K DRVIQLAAKV+GS  P H F+  VDP  + +  R+RE+TGITP +LA N ARPF +VWP F +WL+ V  E        GG+V  AHNA FD  FL EE+ R       + +  GV+  VD+L  L++ + WRQ   + ++P +PK FKLGG+FEH++G EMP AH A+GDV GLE +LSAPGI+  WR VAS++PSCQIPV
Sbjct:  738 DLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEFVDPGAVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEEVSRCGFSRFMMGQDMGVVCIVDSLRCLKESSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPV 962          
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 3.070e-65
Identity = 117/225 (52.00%), Postives = 156/225 (69.33%), Query Frame = 0
Query:  245 NLVDGGHTIVLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVG------GGIVLAAHNATFDRGFLHEEIHRARLGGLTIAR-AGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAPGISGRWRQVASTNPSCQIPV 462
            +L +G HT+V++D+ETTGLR K DRVIQLAAKV+GS  P H F+  +DP  + +  R+RE+TGITP +LA N ARPF +VWP F +WL+ V  E        GG+V  AHNA FD  FL EE+ R       + +  GV+  VD+L  L++ + WRQ   + ++P +PK FKLGG+FEH++G EMP AH A+GDV GLE +LSAPGI+  WR VAS++P+CQIPV
Sbjct: 1137 DLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPNAHNAMGDVVGLERILSAPGINEGWRGVASSHPACQIPV 1361          
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A836CEI0_9STRA (ATP-dependent DNA helicase RecG n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI0_9STRA)

HSP 1 Score: 147 bits (370), Expect = 9.240e-34
Identity = 90/224 (40.18%), Postives = 130/224 (58.04%), Query Frame = 0
Query:  243 PLNLVDGGHTIVLLDLETTGLRPKTDRVIQLAAKVM---GSRAPNHV-FSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVE---------VGGGIVLAAHNATFDRGFLHEEIHRARLGGLTIARAGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAPGISGRWRQVAS 453
            PL+L    H  V+LD+ETTG     DRV+Q+AA V+   G  A  H  F++  DP   YI  +I+ LTGITP++L    A  F + W +F++WL   A +          G  IVL AHNA FD GFL  E  RA LG   I+ AG+ AFVD++++++DR  WRQ+   ++ PP  K   L  ++E++ GR++  AH A+ DV  L  V++   +  RWR++AS
Sbjct: 1195 PLDLTSEEHMFVVLDVETTGFSFAYDRVLQIAAAVLSVDGGGALQHGHFNMYCDP-AKYISAKIQGLTGITPQLLRSKGAVKFPQAWQQFQAWLNAAAAQHKATNGNATSGTSIVLIAHNANFDHGFLVAETERAGLGSDAISSAGITAFVDSVALVKDRDLWRQAG--MDPPPTNK---LTDVYEYLEGRKVSDAHNAMADVIALATVVNGSVLRDRWREMAS 1412          
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: W7TB29_9STRA (Atp-dependent dna helicase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB29_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.290e-26
Identity = 77/230 (33.48%), Postives = 116/230 (50.43%), Query Frame = 0
Query:  252 TIVLLDLETTGLRPKTDRVIQLAAKVM-------------------------GSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNATFDRGFLHEEIHRARLGGLTIAR-AGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAPGISGRWRQVASTN 455
            T ++ D ETTGLR +++R+IQLAAKV+                         G      +F+  VDP G +I  +I E+TGI+   L +  AR F EVWP F  W+   AV  G  +VL AHNA FD   L  ++ R+ L          ++  +DTL+V R    W +   +  +P +P  F+ G L+ ++   ++  AH+A GDV GLE +L  P ++ +WR   S +
Sbjct:  622 TFIIFDTETTGLRAESERIIQLAAKVLSPSNWGGEEDDEQANELVAAGLACGGEPEDGLLFNAYVDP-GFWIPAKITEITGISNEFLFRQRARRFEEVWPDFLRWVN--AVRGGKPVVLVAHNAGFDHKMLMFDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIWSRRSGD-GLPIKPNTFRQGALYRYLLRDDLKNAHSAKGDVLGLEALLKHPFVNKKWRSAGSAH 847          
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A4D9CQG2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQG2_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.870e-26
Identity = 77/230 (33.48%), Postives = 116/230 (50.43%), Query Frame = 0
Query:  252 TIVLLDLETTGLRPKTDRVIQLAAKVM-------------------------GSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNATFDRGFLHEEIHRARLGGLTIAR-AGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAPGISGRWRQVASTN 455
            T ++ D ETTGLR +++R+IQLAAKV+                         G      +F+  VDP G +I  +I E+TGI+   L +  AR F EVWP F  W+   AV  G  +VL AHNA FD   L  ++ R+ L          ++  +DTL+V R    W +   +  +P +P  F+ G L+ ++   ++  AH+A GDV GLE +L  P ++ +WR   S +
Sbjct: 1040 TFIIFDTETTGLRAESERIIQLAAKVLSPSDWGGGEDDEQANQLAAAGLASGGEPEDGLLFNGYVDP-GFWIPAKITEITGISNEFLFRQRARRFEEVWPDFLRWVN--AVRGGKPVVLVAHNAGFDHKMLMFDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIWSRRSGD-GLPIKPNTFRQGALYRYLLRDDLQNAHSAKGDVLGLEALLKHPFVNKKWRSAGSAH 1265          
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A7S3UQS9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQS9_HETAK)

HSP 1 Score: 112 bits (279), Expect = 7.760e-25
Identity = 73/167 (43.71%), Postives = 89/167 (53.29%), Query Frame = 0
Query:  243 PLNLVDGGHTIVLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLV-DPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNATFDRGFLHEEIHRA--RLGGL--------------TIARAGVMAFVDTLSVLRDRATW 392
            P++L+     IVLLD+ETTGL     RV+QLAAKV+GSRAP   F+  +  PE     +  RE+TGIT  VL K  A PF E W  F+ WLA V        VL AHNA FDR FL  EI R    +GG                +AR  V A V T  +L+DR+ W
Sbjct:   32 PVSLLQENVVIVLLDVETTGLDAGRHRVLQLAAKVLGSRAPGAAFATYIRPPENTPWAEGAREVTGITWEVLEKEGALPFSEAWALFRRWLAEV--------VLVAHNAPFDRRFLEAEIERLLPNVGGXXXXXXXXXXXXXRGALARENVAAVVCTWKLLKDRSLW 190          
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: UPI001AFD524B (3'-5' exonuclease n=1 Tax=Brevibacillus reuszeri TaxID=54915 RepID=UPI001AFD524B)

HSP 1 Score: 74.7 bits (182), Expect = 1.000e-11
Identity = 68/192 (35.42%), Postives = 95/192 (49.48%), Query Frame = 0
Query:  253 IVLLDLETTGLRPKTDRVIQLAA-KVMGSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVL--AKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNATFDRGFLHEEIHRARLGGLTIARAGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSA 441
            I + D ETTGL P+T+RVI++AA +V+  +  +  F  LV+P G  +  +I E+TGIT  +L  A +    FR +    K  L            L AHNA FD  FLH  + R  L G T        F+DTL++ R+R T+                KL  +    +G EM GAH A+ DVEG   +L+A
Sbjct:    6 ITVFDFETTGLDPRTERVIEMAAIRVINGQIVSG-FHTLVNP-GRPLTPKITEITGITDDMLTDAMDENIAFRILRNIMKDSL------------LVAHNAAFDLQFLHWAMQR--LAGKTFDNP----FIDTLTISRERTTYPH--------------KLTDMCSK-YGVEMEGAHRALNDVEGCWKLLNA 162          
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A497C6E9_9CHLR (3'-5' exonuclease DinG n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497C6E9_9CHLR)

HSP 1 Score: 77.0 bits (188), Expect = 4.200e-11
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 0
Query:  253 IVLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVG-----GGIVLAAHNATFDRGFLHEE 360
            I++LDLETTGL PKTD++I++ A +   +     FS LV+P G+ I   I ELTGIT  ++   NA P  E    FK +L     + G     G + +A HN  FD  FL+EE
Sbjct:    6 ILVLDLETTGLDPKTDKIIEIGAVLHTEKGKQVEFSQLVNP-GIPIPRFITELTGITREMVQSENALPIEEALQNFKDFLIKELGQFGAVSKIGSLPVAGHNVGFDLSFLNEE 117          
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A3D1V660_9CHLR (GIY-YIG domain-containing protein (Fragment) n=4 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3D1V660_9CHLR)

HSP 1 Score: 72.0 bits (175), Expect = 5.080e-10
Identity = 65/221 (29.41%), Postives = 93/221 (42.08%), Query Frame = 0
Query:  254 VLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNATFDRGFLHEEIHRARLGGLTIARAGVMAFVDTLSVLRDRATWRQSDEELNVPPQPK------AFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAP----GISGRWRQVASTNPSCQIPVLP 464
            V++D+ETTGL+P   R+I++    +        +S LV+PE   I D IR LTGI  +++A   A  FR + P          VE+ G + L  HN  FD GFL+ E+ RA L  L       +A   TL+    R         L +P +        A     +F  + GR        + D+  L     AP       GR R +  T+    IP  P
Sbjct:   91 VVVDVETTGLKPAQQRIIEVGLIRVSPHGAPFRWSSLVNPERR-IPDYIRSLTGIDDQLVA--GAPDFRSIAPTI--------VEIVGDLPLVGHNVEFDIGFLNAELARAGLPKLINQSIDTLALAATLAPETRRLNLGDVARSLGIPAKESHRSSNDATTTLEVFGALLGRAQKHGLVTLEDLTRLNQTRRAPVPVHNAVGRGRSILDTSHLASIPHAP 300          
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A1F2FGY8_9CORY (DNA polymerase III subunit epsilon n=8 Tax=Corynebacterium TaxID=1716 RepID=A0A1F2FGY8_9CORY)

HSP 1 Score: 72.4 bits (176), Expect = 7.760e-10
Identity = 69/198 (34.85%), Postives = 92/198 (46.46%), Query Frame = 0
Query:  242 LPLNLVDGGHTIVLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNATFDRGFLHEEIHRARLGGLTIARAGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVL 439
            +P +L  G  T V++DLETTG+RP  D +I++ A  +        FS L+DP GM +   I +LTGIT   L  ++A     V PRF        +E   G V  AHNA FD GFL     +    GL      V   VDTL + R     R  D       +  +F+LG L  +V G E+   H A+ D      VL
Sbjct:    1 MPDDLGLGDTTFVVVDLETTGMRPGDDHIIEIGAVRVRGGVEEGRFSELIDP-GMPLPSFISDLTGITDSDL--DDAPQLGSVLPRF--------LEFARGAVWVAHNAPFDIGFLRASCRQL---GLPWPAPTV---VDTLQLAR-----RLLDRN-----RTGSFRLGDLARYV-GAEVTPNHRALDDAAATVAVL 170          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN7_ECTSI7.890e-6752.89ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A6H5JXY9_9PHAE3.070e-6552.00ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A836CEI0_9STRA9.240e-3440.18ATP-dependent DNA helicase RecG n=1 Tax=Tribonema ... [more]
W7TB29_9STRA1.290e-2633.48Atp-dependent dna helicase (Fragment) n=1 Tax=Nann... [more]
A0A4D9CQG2_9STRA3.870e-2633.48Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3UQS9_HETAK7.760e-2543.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI001AFD524B1.000e-1135.423'-5' exonuclease n=1 Tax=Brevibacillus reuszeri T... [more]
A0A497C6E9_9CHLR4.200e-1141.593'-5' exonuclease DinG n=1 Tax=Chloroflexi bacteri... [more]
A0A3D1V660_9CHLR5.080e-1029.41GIY-YIG domain-containing protein (Fragment) n=4 T... [more]
A0A1F2FGY8_9CORY7.760e-1034.85DNA polymerase III subunit epsilon n=8 Tax=Coryneb... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013520Exonuclease, RNase T/DNA polymerase IIISMARTSM00479exoiiienduscoord: 252..448
e-value: 1.1E-5
score: 34.8
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 254..363
e-value: 8.9E-13
score: 49.1
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 251..445
e-value: 2.6E-33
score: 117.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 470..484
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 455..511
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..181
NoneNo IPR availableCDDcd06127DEDDhcoord: 254..433
e-value: 9.31099E-33
score: 120.483
IPR040393Three-prime repair exonuclease 1/2PANTHERPTHR13058THREE PRIME REPAIR EXONUCLEASE 1, 2coord: 248..439
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 252..439

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig798contigP-littoralis_Contig798:90706..94883 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig798.29.1mRNA_P-littoralis_Contig798.29.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig798 90704..94883 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig798.29.1 ID=prot_P-littoralis_Contig798.29.1|Name=mRNA_P-littoralis_Contig798.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=511bp
QDDNGAGGTLSTPATPPMIYVTRSLRPALAAEGFECGGCAEPVPASGNKN
AAGSAVEEWDRPESFEFLREFVSNTENTRGPLSDRSALKNAQQPHRPVAE
HEYPVRGTPAAATGSAKSPRPPSPISSPKPALALRGGDHLSACSGARGPG
GAGEAGAVDGERAGGVQAGGGTGRPRALSEDGVLARSCRSFGVEGGLESM
EEDSADVKGFSALAAALEGSSSSLSPSSSSSSVAAATSTSQLPLNLVDGG
HTIVLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLVDPEGMYICD
RIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNA
TFDRGFLHEEIHRARLGGLTIARAGVMAFVDTLSVLRDRATWRQSDEELN
VPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAPGISGRWRQ
VASTNPSCQIPVLPPLEDESQPRTKNTTNPLRARKPSKISPRLPGVEGVG
AGSERTDKKGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR036397RNaseH_sf
IPR040393TREX1/2
IPR012337RNaseH-like_sf