mRNA_P-littoralis_Contig12.163.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.163.1
Unique NamemRNA_P-littoralis_Contig12.163.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:690228..690676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size449
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.869995-UTR-P-littoralis_Contig12:690227..6902681680789504.869995-UTR-P-littoralis_Contig12:690227..690268Pylaiella littoralis U1_48UTRP-littoralis_Contig12 690228..690268 +
1680789504.888872-UTR-P-littoralis_Contig12:690610..6906761680789504.888872-UTR-P-littoralis_Contig12:690610..690676Pylaiella littoralis U1_48UTRP-littoralis_Contig12 690611..690676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.8803222-CDS-P-littoralis_Contig12:690268..6906101680789504.8803222-CDS-P-littoralis_Contig12:690268..690610Pylaiella littoralis U1_48CDSP-littoralis_Contig12 690269..690610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.163.1prot_P-littoralis_Contig12.163.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 690269..690610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.163.1

>prot_P-littoralis_Contig12.163.1 ID=prot_P-littoralis_Contig12.163.1|Name=mRNA_P-littoralis_Contig12.163.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MHPVERRMWFVGYATVILGRASTGGAGCTGFELNPGMSSFCPRVTCACVC
VCLFATDVFHSCLQIPSEALVAGVQRCFETTVIFGVNSYRSGKPKIGKKT
SLYRNIVHFWITT*
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mRNA from alignment at P-littoralis_Contig12:690228..690676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.163.1 ID=mRNA_P-littoralis_Contig12.163.1|Name=mRNA_P-littoralis_Contig12.163.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=449bp|location=Sequence derived from alignment at P-littoralis_Contig12:690228..690676+ (Pylaiella littoralis U1_48)
GAACACGCCCAAATGGTCGTGAAATTGTACCCGGAGTCGATATGCACCCT
GTAGAACGTCGCATGTGGTTCGTAGGCTATGCGACGGTGATTTTAGGGCG
TGCCAGCACCGGGGGGGCAGGATGCACAGGTTTTGAACTCAACCCGGGGA
TGTCGTCATTTTGTCCCCGGGTGACCTGTGCGTGTGTGTGTGTGTGTTTG
TTTGCGACAGATGTTTTTCACTCGTGCTTACAGATTCCCTCAGAAGCACT
CGTCGCGGGGGTGCAAAGGTGTTTTGAGACTACAGTTATTTTCGGCGTTA
ATTCTTACCGTAGCGGCAAGCCTAAAATCGGGAAAAAAACCAGTCTATAC
CGGAATATAGTTCACTTTTGGATAACAACGTGAATATCTTGGGGTAGGGA
ACGATTTTTTTAATGCGGGTTTTTGCACCGTGTTCACGGTGAGCTGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:690228..690676+

>mRNA_P-littoralis_Contig12.163.1 ID=mRNA_P-littoralis_Contig12.163.1|Name=mRNA_P-littoralis_Contig12.163.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig12:690228..690676+ (Pylaiella littoralis U1_48)
ATGCACCCTGTAGAACGTCGCATGTGGTTCGTAGGCTATGCGACGGTGAT
TTTAGGGCGTGCCAGCACCGGGGGGGCAGGATGCACAGGTTTTGAACTCA
ACCCGGGGATGTCGTCATTTTGTCCCCGGGTGACCTGTGCGTGTGTGTGT
GTGTGTTTGTTTGCGACAGATGTTTTTCACTCGTGCTTACAGATTCCCTC
AGAAGCACTCGTCGCGGGGGTGCAAAGGTGTTTTGAGACTACAGTTATTT
TCGGCGTTAATTCTTACCGTAGCGGCAAGCCTAAAATCGGGAAAAAAACC
AGTCTATACCGGAATATAGTTCACTTTTGGATAACAACGTGA
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