mRNA_P-littoralis_Contig798.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig798.34.1
Unique NamemRNA_P-littoralis_Contig798.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig798.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig798contigP-littoralis_Contig798:96054..101485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size225
Hectar predicted targeting categoryother localisation
Exons2
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791628.169818-CDS-P-littoralis_Contig798:96055..961941680791628.169818-CDS-P-littoralis_Contig798:96055..96194Pylaiella littoralis U1_48CDSP-littoralis_Contig798 96056..96194 -
1680791628.1825442-CDS-P-littoralis_Contig798:101402..1014851680791628.1825442-CDS-P-littoralis_Contig798:101402..101485Pylaiella littoralis U1_48CDSP-littoralis_Contig798 101403..101485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig798.34.1prot_P-littoralis_Contig798.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig798 96056..101485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig798.34.1

>prot_P-littoralis_Contig798.34.1 ID=prot_P-littoralis_Contig798.34.1|Name=mRNA_P-littoralis_Contig798.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
QSTPEIGKTEETRRWRETCNTARKARCIWDRSLQQRRLGKVCVRLFAFLL
GTAHVPPQRHHRLMSSPARGTGPI
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mRNA from alignment at P-littoralis_Contig798:96054..101485-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig798.34.1 ID=mRNA_P-littoralis_Contig798.34.1|Name=mRNA_P-littoralis_Contig798.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5432bp|location=Sequence derived from alignment at P-littoralis_Contig798:96054..101485- (Pylaiella littoralis U1_48)
CAGAGCACGCCGGAAATAGGGAAGACCGAAGAGACACGAAGGTGGCGAGA
AACCTGCAACACTGCAAGGAAGGCCAGATGCATGTGAGCGAGTGACGGAG
TCGCTGACGAGAATCAGGGGTATTCATCCAACAGAAGCACACTACGTTAT
TGCGGTGTTATTGATTATACAGGTAGGTGTCGTTGATGTGGGCCCGAACA
ACAAATCCTACGAACATCTCGGGCGACCACTGCGACAACGGACCACATGT
CAAAGCGACGGCCCACCAAAAATGAACAAGGCGCCATCACAACACGCGAG
TCTTGACTCCTTCCCGTGGAGCTCTCTATTGACAACTCGTGTGTCGTTTG
CGAAGTTTGCATGCGGCGACCGAAGACAGCAAGGCAGCAAATAGAAAACC
CATAAAGCAGTAGATCCCACCCGTATGTATATACTCCGTATATGGTACCT
GGTACCTGGTATTATAGACTATATCCTCAAGGTAACATATCGTCACGAAG
GAAATTCAAATTTCAAAAAAAAAAAACATGTTTCGTGAGGCCTACTTCCT
GTGTCGGAGATATCTACTGCTCTACACTCTATCCTTCGAGTACTCGTATC
ATATCATAATTCGTATGATACGTCGTGGGCCACTTGGAGTTTCTCGAGTT
GAAAAAGCATTGCCTGATCGTCCAAGAGTCGGGAAATCAGGCTGGCCAAA
TTGATAAATTCATGGGAAGATCGGAAAATCTGAACAACGATTGGGAATCT
GGAGGTGGGTCTTTTCTGCCTCTTCCTTGTCCTCGGCTACTCTCTCTCTC
TCGTCACTACGGCATTCTGCCTCTTCTGTTCCGACTTTGATACGCGGGAA
GACACGTCTGCCTTGTCTGTCTGTCTTCTATCGTTCTACACTAGTTTGTA
CACGAGGTTCCCCCTTGTCAAACAGGACTCGGTGTGGACGAGACCACTGT
CGTACGCCCATAGTTCAGATGCGCGGCATATTAACAAGAAGCAGGAAAGA
GCGATCCCCATCCATGTCAATAGTCCAAAGGTCCCCGTCTGCGCGGTTTC
TCTTCCTGCTGAAGGCATGGATACCGTGAGCGGATTCATAATGTACGGTT
TCGATTCTGACCTCGCGTGGACCCTGTCGATCGACTTCCCAATCGCTACT
ACTCTAAAATGCGACGTACGCAGCTTCCAGCCTTCAAATATATAGTTAAG
TTGAGGTATCATATACCCCTTTTATCGTTTGACTCTGGTTCGTGCACGAC
AGACGCCTCGATGCCGTGTGAAGATCGCCACCTCTCTCACCGCACTATCC
ACGACGTCCGCTTTGTATCAACCGCGGCCCGAGGTTCGCCTTCGTTCTCT
CTGTGTGCCGTGTCTACCCACTTGGTACGATACTCATTCATGGTGCTCGC
GCTCAAATGATCCGTGTACTAAATTGTGGGTCCACGGCAAGTTCTTCCCC
TTCCACACTCGTTCCTCGTTGCCCGTGTTCCGTTCCTGTTCCTGAACGAA
GGCAAAGAATGGCACACGCAGCAGTCAGTTTAGGCCGTACCTGCGGTCCC
TTACTCCCGTTCTTTTCTGAGTCTCTTCTTTCTGGTGTCAGGCATCCCCC
ATGCCTGTTCATCCATACGCTTGTTCGGCAGTCTCTCTCTCTCGCAAGAT
CACTTCCATTGGTTCCCTTCCGTTGGTTCCGATGTCTTGATTCTTCCACT
CGTCGTCTTTCGTCCGTTTTCCAACTTTTGTCATCTACCTTCTCCGAGTT
CCACCTCGATATCCCGCCTGCTAGCGTGCTTTGCGTCCTGGAATGTGTTT
TGCGACGTGGCACCACCCGATCTCACTTCCATGCTACCAATCAGTCTCAT
GGGCAGCCCGGCCCGTCTGTCCTTAGCCCCCCCGCATCTGTTTACCCATC
ATGAATACTGCTGAGACGTTATCCCCCCCCATAAGAATTGACAGACCCGG
TTTTGCTGGTTTTTCTCCGACGATCATCTAAACTATCCAGCGCGTCACTG
TCATTCCGAGCAGTTCGAGGGTGTTCATCGTGATTTGCGCTAGTTTCCTT
TGCCGCTGCCTTTCTCTTCAGTTCGGCGGTGAACTCGGGTCTAAATTATT
GATGTCTCCAGAACAAATTCAGCCGCGGGCAGTGTTCACCGACGTCGTCG
AAACTCGCACCCGACAGGTAGAGGCGAGAAGGGGTACGCTGGACATGGTT
GAAAGAAAAAACATTTACAGTATCGACTCTCCCCTCTCTGCCAGCTTGTA
TCCAAGGGCCCATCGCCAGAAGTCTAAATTCTCATAGAACTCCCAACCTA
TTGAGGCGCACTTGCCGTTTCTTCCTCGCTTGTCTACTGGCCTTGTCGTG
GAAGCTGCTCAGGTGTATGAAAGCACTTGCCAGAGCTTTCCGGCGATGAT
TAGAACTTCCTGTACTCTTGGCGAATTTTCTACGATATCTCCCGGCCGTT
CCGTCGCCTCGATAGCTAGCTAGTGTCATCTTGTGCGTGTCAATCGTCGT
GTGACCAAGAAAATTCACCCCGTGGTGTCCCGGTTTTGTACCTTTCTCGG
GGCGAGAATCGGCGTTTCTCCCGCTCTCCCCCCTGGCTCAAAAATCTCCC
AGTTTGCTAGTTCGTGACAAGATTCTCTTGTTTGTCGGCGAGTTAACTGC
TGTGTGGGGGGCGATCTTTTCGCGCTAGTGCTATCTGCTAGCGTCTCCTT
AATTTCTCCCTTGTGGGTCAGTTGCTACAACCATGCGATGCGGTCCGGTC
TCCTTTTCGAAAGGAGTTCGCTTCTCCACCACTACGATTGGGTCCGTTTC
CTACCTTGAGAAAGGGGTCAGTGTAAGTTTCCCTGATGATGAGATTGGGT
CCGTCTTGCATTTCTGCCTCGTTGAAGGGGTCGGTTTCTCCAATCCTACG
ATTGGGTCCGTTCTCTCCCTTGTGAAAGGGGTCAGTGTCAGTTTCTCCAA
TACTACGATTTTGGGTCCTCCGCCATTCTCTCCCCCGTGGTAGGGGTCGG
TGTCTCCACCACCACGATTGGGTCCGTCATACTTTTTCCATTTCTTCCCG
TCGCCAGGGGTCAGGGGTCATTTTTGAAGCTATTATTTCAGGTCCTGGCT
TCCGTTTGTGTTGCGCCTTGTTGACAGAGTTCATTCTGAGTCGGCGCATT
CGTTTCGTCAGTCGATCCATACGAAAGTCTGTTGTTTTGCCGGGTTTGAT
ACCTCTTCTCTCGCCGTAGAAAACGCTCGGCTGTTTGATACGAACCCAGG
GAAGAGGCGCTGCTGAGAGTGCCGACACGGTTCTGCTTCTGTCCGCAAGA
GCCGCAACCACGGATTACTCCTCGACCCTCTGCCTTGTTGGCGCCACCGC
GTGATGGGGCCCGTACCCTCATGGATTGCTGCTGTTCCTACCTGCTGCTC
CGGACTGCCGGTAGCGTTGCTGCTGAAGCGGGCCACCGAGCTGCGGGCGG
GGGGGAGGCTGCGGGGGCGGAGGCGGGGGCGAGGGCGGGGGCGGGCGACG
CGACAGCATGGGCAACGTGGTTCTGAACCGGGGAGGGGGGGAGTCCGTGT
GGGGGTCCGAGGGGGTTGCGTCGAACGTTGGGGCGGACCTGCACGTGGTC
GAGGGAGCAGTGCCGGCGGGAGCAGGTCTGTCCCTTCCAGCGTGCTAGGT
ATGCGCGGTGGGGCGTGTCCCATGCACGAGCTCCTGTTGGAACGGCGTGG
GTGGGGGAGGGGCAGGGGGGGTGGCTGGGCGGTGCTGCTGTGGCCGTCCA
CGGCCGGGACGCGGTGTTGCTTACTGCGGTGCCGTGTCCGGAGGCCTTCC
TCTTGCTGCCGTGCGGTTGTAGTTGTTGAATCCCGGCGAGGTTGTTGCTG
ACCTTGCCGACTATGGCGTCGGCGCTGCCTTCGGCCGTCAGTCCTCGCAG
ACGGACGGGAGAGCCAGCGGCGCGTCACCGCCGTTGGGGGCAGCAATCTC
GTGGGTCATGCGGAGCTCATCGGCCCTGCTCGCAATGATCCCAAAAAATC
GCTGATGTCCGAGTTCGTTACGAATTGTATTATCAATCAAAGAAAACCGT
TGATGTCTGAGTTCGTTACGAATTATACTGTTAATTTTAAACTAATAAAT
GTAATTCGTAACGAACTCCGACATCAACGATTTTCCTGGGGTCATTGCGG
ACAGGGCCGATGAGCTCCGCATGACCCACGAGATGACCCACGAGATGACC
CACGGGATTGCTCCCCCGAACGGCGGTGACGCGCCGCCGCTTCTCCCGTC
CGTCTGCGAGGACTGACGGCCGACTGACGGCCGAAGGCAGAGCCAACGCC
ATGCAAGCTCAGCAACAACCTCGCCGGGATTCTACAGCCACAACCGCACG
GTGCCAAGAGGAAGGCCTCCGGACACGGCACCACAGCCAGCAACACCGTG
TCCCGGCCAAGGACGGCCACAGCAGCGCCGCCCAGCCACCCCCGCTGCCC
CTCCCCCGCTCACGCCGTTCCAATCGATCGATTCCCAAACGAAACTCTCG
TTGATAGCGCTGCTGTTGTGCTCCTATACCTTTACGGGCGCTCCAACACC
TTCTCTTCGAAATCTCTCGGCTGTACCGAAGGTGACAATCGCTTCTGACT
CTCTGTATTCCCTGTGTTCACATTTACCCCCGTGTTCCTTGTGTACCTTC
TCTCCATGTACCCTGTGTACCCTTTTCTGACTCTCGTCGCTCTTTCCATA
AATTTCCGAAACGTTTCCATAAACCACGGTTTCCATCGTACTTCGAATCC
TACAGGTTGTGACTGCATGCTAGGGGCTACCTTGGGAGTCCGCACAACAG
CAAGTTTTTATCAAGCGCCTATTTTGTCTGCTCTGTTGGGTTTAAAATCT
CGAATTACAATTTGGTGTTCGGGCCACCTCAAACTCTGTACGAACCAGCA
CGGCAGCACATCCGGCCCTTGCAGCAGCACAGCAGTAGTATGGTTTCATT
TACGAAAGGGTGAACTGAGCCTCCAAGACAAGCCACGAAGCCCGTTCGAG
GGAGGTATGATATACCCTTGGTTTTCAATACTCACGGTGCTGTAGGAAAC
ACCTCTGCTTCTGCGCTGCCCCATAAGGCGAGTGTTTTCATGCTTTTGAC
ATGTGATGTCTGACCTCAAGCTTGCTATCCATCAATTCGCATCTCTACAG
AGTAGATGCGATCACGAGTAGTATCTTATGTGTGGTTCTGAACGTACTTT
TTCCTGTCTTTGCTTATGTACGTCGTGGTTATCCCTCTCAAATTAACAAA
CTACCACAGAATCCCCGACAACCCCCGTTTTTCTTCGACAGCTGGGACCG
AAGCCTGCAGCAGCGACGCCTTGGAAAGGTTTGCGTTCGGCTCTTCGCCT
TCTTGCTCGGCACCGCGCACGTTCCGCCTCAGCGGCATCACCGTCTCATG
TCGTCCCCCGCTAGGGGAACCGGGCCAATTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig798:96054..101485-

>mRNA_P-littoralis_Contig798.34.1 ID=mRNA_P-littoralis_Contig798.34.1|Name=mRNA_P-littoralis_Contig798.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig798:96054..101485- (Pylaiella littoralis U1_48)
CAGAGCACGCCGGAAATAGGGAAGACCGAAGAGACACGAAGGTGGCGAGA
AACCTGCAACACTGCAAGGAAGGCCAGATGCATCTGGGACCGAAGCCTGC
AGCAGCGACGCCTTGGAAAGGTTTGCGTTCGGCTCTTCGCCTTCTTGCTC
GGCACCGCGCACGTTCCGCCTCAGCGGCATCACCGTCTCATGTCGTCCCC
CGCTAGGGGAACCGGGCCAATT
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