mRNA_P-littoralis_Contig1.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.21.1
Unique NamemRNA_P-littoralis_Contig1.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:181979..182932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size921
Hectar predicted targeting categoryother localisation
Exons2
Cds size618
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789307.2000868-UTR-P-littoralis_Contig1:181978..1821281680789307.2000868-UTR-P-littoralis_Contig1:181978..182128Pylaiella littoralis U1_48UTRP-littoralis_Contig1 181979..182128 +
1680789307.2454424-UTR-P-littoralis_Contig1:182779..1829321680789307.2454424-UTR-P-littoralis_Contig1:182779..182932Pylaiella littoralis U1_48UTRP-littoralis_Contig1 182780..182932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789307.2220976-CDS-P-littoralis_Contig1:182128..1826731680789307.2220976-CDS-P-littoralis_Contig1:182128..182673Pylaiella littoralis U1_48CDSP-littoralis_Contig1 182129..182673 +
1680789307.2349572-CDS-P-littoralis_Contig1:182706..1827791680789307.2349572-CDS-P-littoralis_Contig1:182706..182779Pylaiella littoralis U1_48CDSP-littoralis_Contig1 182707..182779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.21.1prot_P-littoralis_Contig1.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 182129..182779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.21.1

>prot_P-littoralis_Contig1.21.1 ID=prot_P-littoralis_Contig1.21.1|Name=mRNA_P-littoralis_Contig1.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=206bp
MVIVTTKSCFHDGYLKGATFNAKSSKAGKFCQEHAAEGTVDVMSRRCSHD
GCTKGPSFNVAGTKRGEFCKKHAADGMVIITVKRCSHDGCAKRPYFSAES
KKGPELCWDHATDDVVEYSRENCSHKSCLKLPVWGMRFGGVPTVCSYHRV
DLPVEAIFYPRECEEEGCRTHSRWGPPDRQPTFVSVSRSKAWYDTNVPIM
FVGKT*
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mRNA from alignment at P-littoralis_Contig1:181979..182932+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.21.1 ID=mRNA_P-littoralis_Contig1.21.1|Name=mRNA_P-littoralis_Contig1.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=954bp|location=Sequence derived from alignment at P-littoralis_Contig1:181979..182932+ (Pylaiella littoralis U1_48)
GCAGTCAAGTTCTGCCGGGAGCACGCCGCCGACGGCGTGGTGGACGTCAG
GGATAGGCACTGCTCCCACGAAGGGTGCACGACGAGACCATCGTTCAACA
CGATAGGCAGCAAGTTGGGCAGGTTCTGCCGGGAGCACGCCGCCGACGGC
ATGGTGATCGTCACGACTAAGTCGTGCTTCCACGACGGCTACTTGAAGGG
AGCCACTTTCAATGCAAAAAGTAGCAAGGCCGGCAAGTTCTGCCAAGAGC
ACGCCGCTGAGGGCACGGTGGACGTCATGAGCAGGCGTTGCTCACACGAC
GGCTGCACGAAGGGACCGTCTTTCAACGTCGCGGGCACCAAGAGGGGCGA
GTTCTGCAAAAAACACGCCGCCGATGGCATGGTGATCATCACCGTCAAGC
GCTGCTCCCACGACGGCTGCGCGAAGCGCCCCTATTTCAGCGCGGAAAGC
AAGAAGGGGCCCGAGTTATGCTGGGATCACGCCACAGACGACGTGGTGGA
GTACTCTAGGGAAAACTGCTCCCACAAGAGCTGCCTGAAGCTCCCCGTGT
GGGGCATGCGTTTCGGCGGAGTACCTACAGTCTGCTCGTATCACAGAGTA
GATCTTCCAGTAGAGGCGATATTCTACCCGAGGGAGTGTGAAGAGGAGGG
ATGCAGGACGCACTCGAGATGGGGACCGCCGGATCGCCAACCCACCCATT
GCCCTGACCACGGCCGCTCGAAGGAGGGGTTCGTGAGTGTATCGCGTTCC
AAGGCTTGGTATGATACGAATGTGCCCATTATGTTCGTAGGTAAAACATG
AAATAGCTATAAATGCACAGCGCACCGTGAGGCTGGAAAATGATGTACGA
GGTAGAATGGCGGGAATGGCAATAGCCACGGCAGAATGGATTGGAGCGCG
GAGCGGAGGAAGTAGTGCGCTGGTTTATTTTCTAGTTCGAGGGTACGGAA
ATCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:181979..182932+

>mRNA_P-littoralis_Contig1.21.1 ID=mRNA_P-littoralis_Contig1.21.1|Name=mRNA_P-littoralis_Contig1.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=618bp|location=Sequence derived from alignment at P-littoralis_Contig1:181979..182932+ (Pylaiella littoralis U1_48)
ATGGTGATCGTCACGACTAAGTCGTGCTTCCACGACGGCTACTTGAAGGG
AGCCACTTTCAATGCAAAAAGTAGCAAGGCCGGCAAGTTCTGCCAAGAGC
ACGCCGCTGAGGGCACGGTGGACGTCATGAGCAGGCGTTGCTCACACGAC
GGCTGCACGAAGGGACCGTCTTTCAACGTCGCGGGCACCAAGAGGGGCGA
GTTCTGCAAAAAACACGCCGCCGATGGCATGGTGATCATCACCGTCAAGC
GCTGCTCCCACGACGGCTGCGCGAAGCGCCCCTATTTCAGCGCGGAAAGC
AAGAAGGGGCCCGAGTTATGCTGGGATCACGCCACAGACGACGTGGTGGA
GTACTCTAGGGAAAACTGCTCCCACAAGAGCTGCCTGAAGCTCCCCGTGT
GGGGCATGCGTTTCGGCGGAGTACCTACAGTCTGCTCGTATCACAGAGTA
GATCTTCCAGTAGAGGCGATATTCTACCCGAGGGAGTGTGAAGAGGAGGG
ATGCAGGACGCACTCGAGATGGGGACCGCCGGATCGCCAACCCACGTTCG
TGAGTGTATCGCGTTCCAAGGCTTGGTATGATACGAATGTGCCCATTATG
TTCGTAGGTAAAACATGA
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