mRNA_P-littoralis_Contig1.199.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.199.1
Unique NamemRNA_P-littoralis_Contig1.199.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1.199.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 62.8 bits (151), Expect = 7.440e-9
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = -2 
Query:  303 TRMLLGKLVGGKDPAQHWSRLTSPE---DNFKAFEATDGSTDDTRLTFGIGTALWTRAAKEKNGAPWYTGVVKGAAKFM 530
            +R++ G + GG  P       T P    ++ + F+AT+GST+D+ L FG+GTALW  AAK+     WY G+++ A +FM
Sbjct:   91 SRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKATEGSTEDSPLVFGVGTALWPTAAKQTG--KWYRGILEAAEQFM 167
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BLAST of mRNA_P-littoralis_Contig1.199.1 vs. uniprot
Match: A0A6H5L1F1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 6.710e-6
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = -2 
Query:  303 RMLLGKLVGGKDPAQHWSR---LTSPEDNFKAFEATDGSTDDTRLTFGIGTALWTRAAKEKNGAPWYTGVVKGAAKFM 527
            R++LG +VGGKDP    S    +   +D+F  F A   ST     TFGI +  W   AK +   PW+ GV++GA KFM
Sbjct:  530 RLMLGDIVGGKDPESGRSEKNWVLCLKDDFVEFGANAESTAGDLRTFGIPSGCWPVIAKLEKEVPWFKGVMEGAEKFM 607
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001AA1A1FE7.440e-939.24hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5L1F1_9PHAE6.710e-641.03Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1005359..1005937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size580
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789309.0312893-UTR-P-littoralis_Contig1:1005358..10055411680789309.0312893-UTR-P-littoralis_Contig1:1005358..1005541Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1005359..1005541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789309.040429-CDS-P-littoralis_Contig1:1005541..10059371680789309.040429-CDS-P-littoralis_Contig1:1005541..1005937Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1005542..1005937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.199.1prot_P-littoralis_Contig1.199.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1005542..1005937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.199.1

>prot_P-littoralis_Contig1.199.1 ID=prot_P-littoralis_Contig1.199.1|Name=mRNA_P-littoralis_Contig1.199.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MPLPLSSPRFFSLSALDYSSVSFSCSFLRAPLPSLCREAVINFAAPFTTP
VYHGAPFFSFAALVHRAVPIPNVSRVSSVEPSVASKALKLSSGDVRRDQC
CAGSLPPTSFPKSILVQNTVCCVMYEHLACDS
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mRNA from alignment at P-littoralis_Contig1:1005359..1005937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.199.1 ID=mRNA_P-littoralis_Contig1.199.1|Name=mRNA_P-littoralis_Contig1.199.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=579bp|location=Sequence derived from alignment at P-littoralis_Contig1:1005359..1005937+ (Pylaiella littoralis U1_48)
CGCGGGAAGAGGAGGGGCGCGCTGAGACTTGGGGGTTGGAGGTAAAACGA
GTGACTGCGATCGCAGCATCCAGCCAATCGGGCGCGTGACGTGGTGCTCG
TTCCATCTGTTCGCTCTTGCTCTCCCGTACCGCCGTTTGTGACATAATTC
TGGATATTTCTACGGTACACGTTCTTCCCCGAGATGCCCCTTCCCCTTTC
TTCTCCTCGATTTTTTTCTCTGTCAGCACTGGATTATTCCTCTGTCTCGT
TTTCCTGCTCCTTTCTGCGTGCCCCCCTCCCGTCCTTGTGCCGAGAGGCA
GTCATAAACTTCGCAGCCCCCTTCACCACCCCCGTGTACCACGGCGCACC
ATTCTTCTCCTTCGCGGCCCTTGTCCACAGGGCGGTGCCGATTCCAAACG
TTAGTCGGGTGTCGTCCGTCGAACCGTCCGTGGCCTCAAAAGCTTTGAAA
TTGTCCTCCGGCGATGTTAGACGTGACCAGTGTTGCGCCGGGTCCTTGCC
CCCGACGAGTTTTCCCAAAAGCATTCTCGTACAAAACACCGTTTGTTGTG
TGATGTACGAACACTTGGCGTGTGATAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1005359..1005937+

>mRNA_P-littoralis_Contig1.199.1 ID=mRNA_P-littoralis_Contig1.199.1|Name=mRNA_P-littoralis_Contig1.199.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig1:1005359..1005937+ (Pylaiella littoralis U1_48)
ATGCCCCTTCCCCTTTCTTCTCCTCGATTTTTTTCTCTGTCAGCACTGGA
TTATTCCTCTGTCTCGTTTTCCTGCTCCTTTCTGCGTGCCCCCCTCCCGT
CCTTGTGCCGAGAGGCAGTCATAAACTTCGCAGCCCCCTTCACCACCCCC
GTGTACCACGGCGCACCATTCTTCTCCTTCGCGGCCCTTGTCCACAGGGC
GGTGCCGATTCCAAACGTTAGTCGGGTGTCGTCCGTCGAACCGTCCGTGG
CCTCAAAAGCTTTGAAATTGTCCTCCGGCGATGTTAGACGTGACCAGTGT
TGCGCCGGGTCCTTGCCCCCGACGAGTTTTCCCAAAAGCATTCTCGTACA
AAACACCGTTTGTTGTGTGATGTACGAACACTTGGCGTGTGATAGC
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