mRNA_P-littoralis_Contig12.139.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.139.1
Unique NamemRNA_P-littoralis_Contig12.139.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:578396..579025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size630
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.8203351-UTR-P-littoralis_Contig12:578395..5786601680789504.8203351-UTR-P-littoralis_Contig12:578395..578660Pylaiella littoralis U1_48UTRP-littoralis_Contig12 578396..578660 -
1680789504.8400006-UTR-P-littoralis_Contig12:579020..5790251680789504.8400006-UTR-P-littoralis_Contig12:579020..579025Pylaiella littoralis U1_48UTRP-littoralis_Contig12 579021..579025 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.8310454-CDS-P-littoralis_Contig12:578660..5790201680789504.8310454-CDS-P-littoralis_Contig12:578660..579020Pylaiella littoralis U1_48CDSP-littoralis_Contig12 578661..579020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.139.1prot_P-littoralis_Contig12.139.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 578661..579020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.139.1

>prot_P-littoralis_Contig12.139.1 ID=prot_P-littoralis_Contig12.139.1|Name=mRNA_P-littoralis_Contig12.139.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MGRYRHRDRLYIWAGSICIYTPVQTPHEVAANCIYLQLQVIRVQLLLVLQ
LSFNWHPEQQQQHQPHHRQLAGNAGSRSRSFASTVPIVPRPRTQERADPS
EGEQSTSVRDRLGAHPPGS*
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mRNA from alignment at P-littoralis_Contig12:578396..579025-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.139.1 ID=mRNA_P-littoralis_Contig12.139.1|Name=mRNA_P-littoralis_Contig12.139.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=630bp|location=Sequence derived from alignment at P-littoralis_Contig12:578396..579025- (Pylaiella littoralis U1_48)
AGAGAATGGGCAGATACCGCCACCGAGACAGACTCTACATTTGGGCTGGT
TCCATATGCATTTACACCCCAGTGCAGACTCCCCATGAAGTGGCCGCCAA
CTGCATCTACCTGCAGCTGCAGGTCATACGAGTTCAGCTTCTTCTGGTCC
TTCAGTTGTCCTTCAATTGGCACCCAGAGCAGCAGCAACAGCACCAACCC
CACCACCGCCAACTAGCGGGGAATGCTGGGAGTCGCAGTCGTTCGTTCGC
CTCTACAGTACCGATTGTGCCTCGCCCAAGGACCCAGGAGCGTGCAGATC
CATCCGAGGGGGAACAATCTACCTCAGTTCGTGATCGTCTAGGTGCCCAT
CCTCCCGGGTCGTGACTGCGGGGACGGGGCCGTGCTCCAGGTGCTCCCAG
CCGTGCTCCTGTTCCGAGTCTTGGGGGGGGTGAGCTCCGAAAGAAACATT
TGTCCGATGTACAACAAGCAGTGTGCACGATGCTGCGCAACCAAGAGCAT
TAGTCTAAGCGGATGAAGCCGGGTGCGGAAGATGGATCCACCAAGAGCGC
TGCCTCCCCTTGTTCAACACCTTCACACAAGAGTCCAAAAGGTGCCGCAT
GTACCAGATGCTCGGCAAACAAAACACGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:578396..579025-

>mRNA_P-littoralis_Contig12.139.1 ID=mRNA_P-littoralis_Contig12.139.1|Name=mRNA_P-littoralis_Contig12.139.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig12:578396..579025- (Pylaiella littoralis U1_48)
ATGGGCAGATACCGCCACCGAGACAGACTCTACATTTGGGCTGGTTCCAT
ATGCATTTACACCCCAGTGCAGACTCCCCATGAAGTGGCCGCCAACTGCA
TCTACCTGCAGCTGCAGGTCATACGAGTTCAGCTTCTTCTGGTCCTTCAG
TTGTCCTTCAATTGGCACCCAGAGCAGCAGCAACAGCACCAACCCCACCA
CCGCCAACTAGCGGGGAATGCTGGGAGTCGCAGTCGTTCGTTCGCCTCTA
CAGTACCGATTGTGCCTCGCCCAAGGACCCAGGAGCGTGCAGATCCATCC
GAGGGGGAACAATCTACCTCAGTTCGTGATCGTCTAGGTGCCCATCCTCC
CGGGTCGTGA
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