mRNA_P-littoralis_Contig797.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig797.26.1
Unique NamemRNA_P-littoralis_Contig797.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig797.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig797contigP-littoralis_Contig797:61073..61390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size318
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791627.439127-CDS-P-littoralis_Contig797:61072..613901680791627.439127-CDS-P-littoralis_Contig797:61072..61390Pylaiella littoralis U1_48CDSP-littoralis_Contig797 61073..61390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig797.26.1prot_P-littoralis_Contig797.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig797 61073..61390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig797.26.1

>prot_P-littoralis_Contig797.26.1 ID=prot_P-littoralis_Contig797.26.1|Name=mRNA_P-littoralis_Contig797.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
QPLIGVRQGAQRRDMGRVPHEGHCVDGAAGSATCGDTARRRGGKWDRLRA
ITAAGHRCLHHRHRCRACSRYCHYRRRSCCCRSRVHRRSANDRRSPPRAC
CRRACR
back to top

mRNA from alignment at P-littoralis_Contig797:61073..61390-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig797.26.1 ID=mRNA_P-littoralis_Contig797.26.1|Name=mRNA_P-littoralis_Contig797.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig797:61073..61390- (Pylaiella littoralis U1_48)
CAACCACTCATCGGCGTGCGTCAAGGTGCTCAACGCCGAGACATGGGCCG
TGTGCCACACGAAGGACATTGTGTGGACGGTGCCGCAGGTTCGGCCACCT
GCGGCGATACCGCCCGCAGACGAGGGGGGAAATGGGATCGTCTCCGAGCT
ATTACCGCCGCAGGACACCGCTGTTTACACCATCGCCACCGCTGCCGAGC
CTGCTCCCGCTATTGCCACTACCGCCGCCGCTCGTGCTGCTGCCGCTCCA
GGGTGCACCGCCGTTCCGCAAATGATCGGCGCTCTCCGCCCCGAGCCTGC
TGCCGCCGAGCCTGCCGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig797:61073..61390-

>mRNA_P-littoralis_Contig797.26.1 ID=mRNA_P-littoralis_Contig797.26.1|Name=mRNA_P-littoralis_Contig797.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig797:61073..61390- (Pylaiella littoralis U1_48)
CAACCACTCATCGGCGTGCGTCAAGGTGCTCAACGCCGAGACATGGGCCG
TGTGCCACACGAAGGACATTGTGTGGACGGTGCCGCAGGTTCGGCCACCT
GCGGCGATACCGCCCGCAGACGAGGGGGGAAATGGGATCGTCTCCGAGCT
ATTACCGCCGCAGGACACCGCTGTTTACACCATCGCCACCGCTGCCGAGC
CTGCTCCCGCTATTGCCACTACCGCCGCCGCTCGTGCTGCTGCCGCTCCA
GGGTGCACCGCCGTTCCGCAAATGATCGGCGCTCTCCGCCCCGAGCCTGC
TGCCGCCGAGCCTGCCGC
back to top