mRNA_P-littoralis_Contig796.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig796.42.1
Unique NamemRNA_P-littoralis_Contig796.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig796.42.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 1.150e-87
Identity = 139/210 (66.19%), Postives = 170/210 (80.95%), Query Frame = 1
Query:    1 KAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTP 630
            +AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N R+  QDV+E+ FGHMR GLGSHRNPTA QAKER ARGD+ R LHG  RAN+NRNAR+G+D++ASGYRA +MLP+ EGERS  +R  + ++  AVL P YIS   P A PV +GSA +   P
Sbjct:  566 EAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFINQRNCGQDVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVADGSAVESGAP 775          
BLAST of mRNA_P-littoralis_Contig796.42.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 1.000e-65
Identity = 119/192 (61.98%), Postives = 138/192 (71.88%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 582
            GY  SADDSKLE LMDILRFF++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+  L D P ++N R   QD+VE+R+GHM   LGSH NPTA QAKERAA+ DL RSLHG SRANH   AR+G+D+IASG R RIMLP      S   R   ++  A  L  RY+S D P
Sbjct:   55 GYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFINLRCIGQDIVEHRYGHMCQCLGSHCNPTAAQAKERAAQEDLQRSLHGISRANH---ARKGEDFIASGIRGRIMLP------SDRRRAVCYD--AGALEERYLSCDVP 233          
BLAST of mRNA_P-littoralis_Contig796.42.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.500e-47
Identity = 85/120 (70.83%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  310 MRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 669
            MR GLGSHRNPTATQAKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+F RY+S  +PRA P VEG ASQESTPASAGQT  V N Y
Sbjct:    1 MRQGLGSHRNPTATQAKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQESTPASAGQTPVVFNSY 120          
BLAST of mRNA_P-littoralis_Contig796.42.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 9.220e-47
Identity = 88/129 (68.22%), Postives = 102/129 (79.07%), Query Frame = 1
Query:  283 DVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 669
            D+ E+R+GHM  GLGSH NPT  +AKERA RGDL RSLHG SRA HN+NAR+G+D+IASG R RI+LP+T+ ERSATMR  S N  +AV+FPRYIS D+P A PVV GSASQEST A AGQT  V NPY
Sbjct:  530 DIEEHRYGHMHQGLGSHSNPTCAEAKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVVGGSASQESTAAPAGQTPVVFNPY 658          
BLAST of mRNA_P-littoralis_Contig796.42.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 4.590e-46
Identity = 93/196 (47.45%), Postives = 130/196 (66.33%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEK---TTLGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLR-DTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRN--ARRGQDYIASG--YRARIMLPITEGERSATMRPSSWNTPAAVLFPRYI 567
            G I S + + ++ L++IL FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++  L  +  R+++PR+  QD+ E+RF H+R  LG+HRNPTA +AK+R+A GDL R+ +G+ R N +RN  AR G D+   G   +  I+L +T+ E    +R    NTPA VL PRY+
Sbjct:   83 GCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPNARSGGDFEEHGDSEKKAIILAVTKVETGKEVRAWCRNTPAEVLCPRYM 278          
BLAST of mRNA_P-littoralis_Contig796.42.1 vs. uniprot
Match: A0A6H5JS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS87_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 5.130e-45
Identity = 97/196 (49.49%), Postives = 115/196 (58.67%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFE----KWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 582
            GYI SADDSKLEELMDILRFF+    +WR +    T  G  T         S    R S  G                                  D+VE+R+ HMR  LGS+ NPTA QAKERAARGDL RSLHG SRANHN+N R+G+++IASG R RIMLP+T+ ERSATMR  S N+ +AV+FPRYIS  +P
Sbjct:    3 GYIRSADDSKLEELMDILRFFDDGGPRWRLDRRWATAPGRRT---------SSPTTRGSTSG---------------------------------PDIVEHRYAHMRQSLGSNSNPTAAQAKERAARGDLYRSLHGVSRANHNKNERKGEEFIASGIRGRIMLPVTDAERSATMRAPSRNSVSAVMFPRYISIHKP 156          
BLAST of mRNA_P-littoralis_Contig796.42.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 4.110e-38
Identity = 70/101 (69.31%), Postives = 83/101 (82.18%), Query Frame = 1
Query:  280 QDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 582
            +D VE+RFGH R GLGSHRNPTATQAKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +P
Sbjct:   66 RDPVEHRFGHTRQGLGSHRNPTATQAKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKP 166          
BLAST of mRNA_P-littoralis_Contig796.42.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.980e-35
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 1
Query:  310 MRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 582
            MR  LGSH NP A QAKER ARGDL RSLHG SRANHN+NAR+G+D+IASG R RIMLP+T+ ERSATMR  S N  +AV+FPRYIS D+P
Sbjct:    1 MRQSLGSHSNPIAAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISIDKP 91          
BLAST of mRNA_P-littoralis_Contig796.42.1 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.440e-34
Identity = 80/147 (54.42%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  232 SRLRDTP-RYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 669
            SR R TP R   PR     V +   G+  +G GS R              DLNR LHG SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +PRA P VEGSASQESTPASAGQ   V NPY
Sbjct:   56 SRSRGTPVRAHAPR---PSVAQKPDGYESEGTGSTR--------------DLNRGLHGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNPY 185          
BLAST of mRNA_P-littoralis_Contig796.42.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.900e-33
Identity = 75/174 (43.10%), Postives = 102/174 (58.62%), Query Frame = 1
Query:    1 KAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDY-IASGYRARIMLPITEGERSATMR 519
            + GYIT AD   L  L++IL FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+       L    R++ PR   QD++E+RF H+R G G+H+NPTA QA E A  GD  R  HG  R N +R+A  G  + +      R   P    ER+  +R
Sbjct:  490 RKGYITGADSPLLGRLLEILEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDED------LVSGGRFLYPRMFSQDILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSA--GMAFQLEDSQGVRAAFPANASERAQVVR 653          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig796.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE1.150e-8766.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE1.000e-6561.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K630_9PHAE1.500e-4770.83Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE9.220e-4768.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE4.590e-4647.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS87_9PHAE5.130e-4549.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2C2_9PHAE4.110e-3869.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB63_9PHAE6.980e-3571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZP5_9PHAE1.440e-3454.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.900e-3343.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig796contigP-littoralis_Contig796:123761..124641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size734
Hectar predicted targeting categoryother localisation
Exons2
Cds size630
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791627.2800715-UTR-P-littoralis_Contig796:123760..1238161680791627.2800715-UTR-P-littoralis_Contig796:123760..123816Pylaiella littoralis U1_48UTRP-littoralis_Contig796 123761..123816 -
1680791627.313731-UTR-P-littoralis_Contig796:124593..1246411680791627.313731-UTR-P-littoralis_Contig796:124593..124641Pylaiella littoralis U1_48UTRP-littoralis_Contig796 124594..124641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791627.291568-CDS-P-littoralis_Contig796:123816..1242121680791627.291568-CDS-P-littoralis_Contig796:123816..124212Pylaiella littoralis U1_48CDSP-littoralis_Contig796 123817..124212 -
1680791627.3031714-CDS-P-littoralis_Contig796:124359..1245931680791627.3031714-CDS-P-littoralis_Contig796:124359..124593Pylaiella littoralis U1_48CDSP-littoralis_Contig796 124360..124593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig796.42.1prot_P-littoralis_Contig796.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig796 123817..124593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig796.42.1

>prot_P-littoralis_Contig796.42.1 ID=prot_P-littoralis_Contig796.42.1|Name=mRNA_P-littoralis_Contig796.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=210bp
MDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCR
YLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTA
TQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEG
ERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQT
IEVVNPYTR*
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mRNA from alignment at P-littoralis_Contig796:123761..124641-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig796.42.1 ID=mRNA_P-littoralis_Contig796.42.1|Name=mRNA_P-littoralis_Contig796.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=881bp|location=Sequence derived from alignment at P-littoralis_Contig796:123761..124641- (Pylaiella littoralis U1_48)
AAAGCGGGCTACATTACATCGGCCGACGACTCCAAACTAGAAGAACTCAT GGACATCTTGCGTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGA CGACGCTGGGCGACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCG TGGACCGACATCCGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATA CTTGTTCGAGGATGATTCGAGGTTCAAGGTCTCCCGCCTGCGCGACACGC CCCGCTACGTCAACCCGCGGCACCATTGCCAGGTATCATGTGCACACAGC GTACTATGTTGTGGCTGATTCTGCCTGTGGGTCTAGTGTGCGTCCGGTCC GACTCCGAGGAGCATTTTCTGAAATTGCGTCGACCTTTCCCCCCCCTGTT TTCCACCACTTCGCCTTCTAACCCCACAGGATGTCGTGGAGAACCGCTTC GGGCACATGCGCGACGGCCTTGGGTCGCACAGAAACCCGACGGCTACGCA AGCGAAGGAGAGGGCAGCACGGGGGGACCTGAATCGTAGTCTGCACGGGC GTTCCCGCGCAAACCACAATCGGAATGCGCGGAGAGGACAGGACTACATC GCGTCCGGATACCGGGCACGGATCATGCTCCCAATAACGGAAGGAGAGCG GTCTGCTACCATGCGGCCTAGCTCCTGGAACACTCCCGCAGCTGTTCTGT TCCCGCGGTACATCAGCTACGACAGACCCCGCGCGGCCCCTGTGGTAGAG GGTAGTGCATCCCAGGAGTCGACGCCCGCCTCTGCAGGCCAGACCATCGA GGTCGTCAACCCATACACTCGTTAATAGGTTTAGAAGGGGTAGGGTGACA ATGGAGAGAGAGGACGAGAAGATCGCAAGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig796:123761..124641-

>mRNA_P-littoralis_Contig796.42.1 ID=mRNA_P-littoralis_Contig796.42.1|Name=mRNA_P-littoralis_Contig796.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=630bp|location=Sequence derived from alignment at P-littoralis_Contig796:123761..124641- (Pylaiella littoralis U1_48)
ATGGACATCTTGCGTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAA
GACGACGCTGGGCGACGTCACCTGGAAGAAGCACTTCATCACGGAGTACT
CGTGGACCGACATCCGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGA
TACTTGTTCGAGGATGATTCGAGGTTCAAGGTCTCCCGCCTGCGCGACAC
GCCCCGCTACGTCAACCCGCGGCACCATTGCCAGGATGTCGTGGAGAACC
GCTTCGGGCACATGCGCGACGGCCTTGGGTCGCACAGAAACCCGACGGCT
ACGCAAGCGAAGGAGAGGGCAGCACGGGGGGACCTGAATCGTAGTCTGCA
CGGGCGTTCCCGCGCAAACCACAATCGGAATGCGCGGAGAGGACAGGACT
ACATCGCGTCCGGATACCGGGCACGGATCATGCTCCCAATAACGGAAGGA
GAGCGGTCTGCTACCATGCGGCCTAGCTCCTGGAACACTCCCGCAGCTGT
TCTGTTCCCGCGGTACATCAGCTACGACAGACCCCGCGCGGCCCCTGTGG
TAGAGGGTAGTGCATCCCAGGAGTCGACGCCCGCCTCTGCAGGCCAGACC
ATCGAGGTCGTCAACCCATACACTCGTTAA
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