mRNA_P-littoralis_Contig12.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.69.1
Unique NamemRNA_P-littoralis_Contig12.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:307999..308492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size494
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.7664678-UTR-P-littoralis_Contig12:307998..3080611680789504.7664678-UTR-P-littoralis_Contig12:307998..308061Pylaiella littoralis U1_48UTRP-littoralis_Contig12 307999..308061 -
1680789504.7856965-UTR-P-littoralis_Contig12:308466..3084921680789504.7856965-UTR-P-littoralis_Contig12:308466..308492Pylaiella littoralis U1_48UTRP-littoralis_Contig12 308467..308492 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.7748094-CDS-P-littoralis_Contig12:308061..3084661680789504.7748094-CDS-P-littoralis_Contig12:308061..308466Pylaiella littoralis U1_48CDSP-littoralis_Contig12 308062..308466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.69.1prot_P-littoralis_Contig12.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 308062..308466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.69.1

>prot_P-littoralis_Contig12.69.1 ID=prot_P-littoralis_Contig12.69.1|Name=mRNA_P-littoralis_Contig12.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
MCVFALCVWYGFCRQIEGKSYRKLLPPPAARSAQAFGQFQGTEAFQLCWR
RGREMRNPGGRNSFQERFFLLRSANQRIILGSTFHVPRLVFFSKTRHYSQ
VVHTGRYHHNVPHIVCGASAPEQRVHLFTFFYMH*
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mRNA from alignment at P-littoralis_Contig12:307999..308492-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.69.1 ID=mRNA_P-littoralis_Contig12.69.1|Name=mRNA_P-littoralis_Contig12.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=494bp|location=Sequence derived from alignment at P-littoralis_Contig12:307999..308492- (Pylaiella littoralis U1_48)
GGGGGGAGCTAGCTGTGCATGTATGTATGTGTGTGTTTGCCTTGTGTGTG
TGGTATGGGTTTTGTCGTCAGATAGAGGGAAAAAGCTACCGGAAACTTCT
TCCCCCCCCAGCAGCCCGTTCCGCACAGGCTTTTGGACAATTTCAAGGAA
CGGAGGCCTTCCAATTATGTTGGAGGAGGGGTAGAGAAATGAGGAACCCC
GGTGGCCGAAATTCTTTCCAGGAACGTTTTTTTTTGCTGAGGTCGGCCAA
TCAGAGAATTATTCTAGGTTCCACGTTCCACGTTCCACGCCTCGTTTTTT
TTTCCAAGACACGCCATTATAGTCAAGTGGTACATACAGGGCGATACCAC
CATAATGTGCCCCATATTGTTTGTGGTGCATCAGCACCCGAGCAACGTGT
ACATTTATTTACCTTCTTCTATATGCATTGAATTGATTCGTTTTATCCGG
GAAAGTGCGCCGAGGCGCAACCGTTGTTCGAAAGGACTCTGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:307999..308492-

>mRNA_P-littoralis_Contig12.69.1 ID=mRNA_P-littoralis_Contig12.69.1|Name=mRNA_P-littoralis_Contig12.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig12:307999..308492- (Pylaiella littoralis U1_48)
ATGTGTGTGTTTGCCTTGTGTGTGTGGTATGGGTTTTGTCGTCAGATAGA
GGGAAAAAGCTACCGGAAACTTCTTCCCCCCCCAGCAGCCCGTTCCGCAC
AGGCTTTTGGACAATTTCAAGGAACGGAGGCCTTCCAATTATGTTGGAGG
AGGGGTAGAGAAATGAGGAACCCCGGTGGCCGAAATTCTTTCCAGGAACG
TTTTTTTTTGCTGAGGTCGGCCAATCAGAGAATTATTCTAGGTTCCACGT
TCCACGTTCCACGCCTCGTTTTTTTTTCCAAGACACGCCATTATAGTCAA
GTGGTACATACAGGGCGATACCACCATAATGTGCCCCATATTGTTTGTGG
TGCATCAGCACCCGAGCAACGTGTACATTTATTTACCTTCTTCTATATGC
ATTGA
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